Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

38814849 .. 38819349

Gene Structure 4501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1953 bp

ATGCAAGCCAGCTCCTTCCAAGTCATTCCCAAACCAATATTTCCCTCACCGATAAACATACCTCCGGTGCACCGACGTCCTCCCTCGCAACGAGTTCGTGCCATCACTACTTCCACAGCCAATGAAACCCATAGTTCTACTCCAATTACCATGTCAACTCTAGAAGTGGTCGATGCCTCCGTGGCCGCATTCTGGGACTACCAGTTCCTCTTCGTCTCGCAACGCTCGGAAACAAACGAGCCCGTGACTCTACAAGTCGTCGAAGGTGCGGTCCCGACAGAGTTTCCTTCCGGAACATACTACTTGGTGGGACCGGGGATCTTCAGGGATGACCACGGTTCGACAATGCACCCTTTCGACGGTCACGGCTACCTCAGGGCTTTTACTTTCGATGGGCTAAATGGGATAAGTTCAGCAAAGGTGGAAGAGCACGACCCGGTGACCAACACATGGCGGTTCCGACATAGGGGGTTGTTCTCGATGCTGAAGAGAGAAGATAAAGTTTGGAACACCAAGGTGATGAAAAACGTAGCGAATACTAGTGTGTTGAGCTGGGGTGGGAGGCTGTTGTGCTTGTGGGAAGGCGGGGAACCATACGAAATTGAACCGGAGAGGTTGGATACGATCGGGAAGGTCAAGCTGATGGATGGTTGGGATTCAGTGGTGGAGAGGAGAAGCGATGGTGGTGATGTATGGGATGTTGCAGCAAGGTTGCTGACGCCAATTTTGTACGGAGTGTTTAAGATGTCAGTGAAGCGATTATTAGCTCATTATAAGTTCGATGCTCGCAGAAATAGACTTCTTTTAATGTCATGCAATGCAGAAGATATTTTTTTACCACGCAACAATTTTACATTTTATGAATTTGATTCAAATTTTAAGGTGGTTGGAAAGAAAGAATTCAGCATCCCTGATCACTTGATGATTCAAGATTGGGCTTTCACAGCCACTAGTTATATACTATTTGCTAATCGTGTCAAGCTTGACGTTACCGGTGCAATGACTTCATTTTGTGGAATGACTCCAACAATTGCAGCATTATCAGTGAACCATAGCAAGGAAACTTCTCCCATATATGTGCTTCCTCGGTTTCCTGATGAAGTGAATTATAATCGAGATTGGAGAGTGCCTGTTGAAGCTCCTTCACAATTTTGGCTGCTACATGTAGGCAATGCCTATGAGAGTTTGGATGAAAATGGGAATTCGGAGATTCAAATACAAGCTTCTGTTTGCTCTTACGAGTGGTTCACATTACATAAATTACTTGGATATGATTGGCAAAGTGGTAAACTGGACCCTTCGATTATGTACTTAAATGGAAACAAAAGCAAGAAAATGCCTCATCTTGTCCAGGTTTCCATCAACTTGGATACCGATGGGATCTATCAAAGATGTGATATTGAGCCATTAAACCAGTGGATCAAGTCATCAGATTTTCCCGTCATAAATCCAGCATTTTCGGGCAGCAAGAATCAGTACATATATGCAGCAGCTTTTTCAGGTTCTCGCAGGGCATTGCCAAACTTTCCATATGACATGGTGGTGATGCTCAATCTTTCAACTAAATCTGTGCGCACATGGTCTGCTGATAGTCGAAGATTTATCGGCGAACCCACTTTCATAGCCAAAGGTTCCGAAGAAGATGAGGGTTACATTCTTGTAGTTGAGTATGCAGTTGCAGTTCAAAGGTGCTATCTGGTTATCTTGGATTCAAAGAGGATTGGAGCGGCTGATGCACTTGTGGCAAGACTTGAATTGGTGAAGATGATCTTCTTTTTAACTTTTGACGTTTCTTCTTCGCTCTTCCGTTTTCTCTTTTTCTCTTTCTTTTGCCGTTTGTTCTTCTGCTGTTCTTGTTCTTCTTTTTTTTCTTTTGATCGGTGTATGTCATGTATTCTCCAAATTTTGATTTTGATTTTTTATTTAATAAAGAAAAGTGTAATCCAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

650

Amino Acids

74.06

Weight (kDa)

6.69

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	72 - 587	8.1e-77	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	774, 1110, 1951
AatII	GACGTC	1 cut(s)	79
Acc16I	TGCGCA	1 cut(s)	1574
AccB7I	CCANNNNNTGG	1 cut(s)	450
AccBSI	CCGCTC	1 cut(s)	1727
AccIII	TCCGGA	1 cut(s)	290
AciI	CCGC	5 cut(s)	186, 269, 454, 585, 1727
AclWI	GGATC	3 cut(s)	326, 1388, 1427
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	5 cut(s)	863, 874, 899, 1201, 1902
AcuI	CTGAAG	2 cut(s)	307, 506
AcyI	GRCGYC	2 cut(s)	76, 719
AfaI	GTAC	3 cut(s)	731, 1310, 1478
AfiI	CCNNNNNNNGG	5 cut(s)	192, 359, 450, 466, 1057
AflIII	ACRYGT	1 cut(s)	1162
AgeI	ACCGGT	1 cut(s)	992
AgsI	TTSAA	9 cut(s)	605, 873, 929, 1136, 1214, 1560, 1685, 1713, 1754
AhlI	ACTAGT	2 cut(s)	539, 950
AjnI	CCWGG	1 cut(s)	1350
AleI	CACNNNNGTG	1 cut(s)	515
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	8 cut(s)	12, 552, 640, 767, 982, 1139, 1223, 1493
AluI	AGCT	8 cut(s)	12, 552, 640, 767, 982, 1139, 1223, 1493
Alw21I	GWGCWC	2 cut(s)	72, 432
Alw26I	GTCTC	1 cut(s)	220
Alw44I	GTGCAC	1 cut(s)	68
AlwI	GGATC	3 cut(s)	326, 1388, 1427
Aor13HI	TCCGGA	1 cut(s)	290
AoxI	GGCC	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	68
ApeKI	GCWGC	6 cut(s)	704, 1034, 1156, 1464, 1487, 1490
ApoI	RAATTY	5 cut(s)	863, 874, 899, 1201, 1902
ArsI	GACNNNNNNTTYG	4 cut(s)	255, 287, 709, 741
AsiGI	ACCGGT	1 cut(s)	992
Asp700I	GAANNNNTTC	1 cut(s)	899
AspLEI	GCGC	1 cut(s)	1575
AspS9I	GGNCC	3 cut(s)	271, 311, 1294
AsuC2I	CCSGG	2 cut(s)	315, 437
AsuHPI	GGTGA	6 cut(s)	39, 451, 529, 698, 1555, 1771
AvaII	GGWCC	3 cut(s)	271, 311, 1294
AxyI	CCTNAGG	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	72, 432
BbvI	GCAGC	6 cut(s)	716, 1046, 1143, 1476, 1499, 1502
BccI	CCATC	7 cut(s)	110, 386, 637, 641, 674, 1367, 1370
BceAI	ACGGC	2 cut(s)	382, 1818
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	1 cut(s)	1352
BciVI	GTATCC	2 cut(s)	613, 1363
BclI	TGATCA	1 cut(s)	913
BcnI	CCSGG	2 cut(s)	315, 437
BcoDI	GTCTC	1 cut(s)	220
BcuI	ACTAGT	2 cut(s)	539, 950
BfaI	CTAG	3 cut(s)	161, 540, 951
BfuI	GTATCC	2 cut(s)	613, 1363
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	8 cut(s)	186, 705, 1035, 1157, 1465, 1488, 1491, 1728
BlsI	GCNGC	8 cut(s)	187, 706, 1036, 1158, 1466, 1489, 1492, 1729
Bme1390I	CCNGG	3 cut(s)	315, 437, 1352
Bme18I	GGWCC	3 cut(s)	271, 311, 1294
BmgT120I	GGNCC	3 cut(s)	271, 311, 1294
BmiI	GGNNCC	6 cut(s)	273, 312, 458, 591, 1296, 1633
BmrFI	CCNGG	3 cut(s)	315, 437, 1352
BmsI	GCATC	6 cut(s)	163, 471, 772, 915, 1536, 1723
BpuMI	CCSGG	2 cut(s)	315, 437
BsaHI	GRCGYC	2 cut(s)	76, 719
BsaJI	CCNNGG	5 cut(s)	180, 314, 334, 513, 1085
BsaWI	WCCGGW	4 cut(s)	64, 290, 607, 992
Bsc4I	CCNNNNNNNGG	5 cut(s)	192, 359, 450, 466, 1057
Bse118I	RCCGGY	1 cut(s)	992
Bse1I	ACTGG	3 cut(s)	202, 1296, 1414
Bse21I	CCTNAGG	1 cut(s)	374
Bse3DI	GCAATG	4 cut(s)	823, 1005, 1177, 1514
BseAI	TCCGGA	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	1352
BseDI	CCNNGG	5 cut(s)	180, 314, 334, 513, 1085
BseGI	GGATG	5 cut(s)	334, 652, 703, 906, 1195
BseLI	CCNNNNNNNGG	5 cut(s)	192, 359, 450, 466, 1057
BseMI	GCAATG	4 cut(s)	823, 1005, 1177, 1514
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	3 cut(s)	202, 1296, 1414
BseRI	GAGGAG	1 cut(s)	685
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	6 cut(s)	716, 1046, 1143, 1476, 1499, 1502
BseYI	CCCAGC	1 cut(s)	552
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	185
BshTI	ACCGGT	1 cut(s)	992
BsiEI	CGRYCG	1 cut(s)	627
BsiHKAI	GWGCWC	2 cut(s)	72, 432
BsiSI	CCGG	6 cut(s)	65, 291, 314, 437, 608, 993
BslFI	GGGAC	3 cut(s)	209, 257, 324
BslI	CCNNNNNNNGG	5 cut(s)	192, 359, 450, 466, 1057
BsmAI	GTCTC	1 cut(s)	220
BsmBI	CGTCTC	1 cut(s)	220
BsmFI	GGGAC	3 cut(s)	209, 257, 324
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	72, 243, 432
Bsp13I	TCCGGA	1 cut(s)	290
Bsp143I	GATC	7 cut(s)	318, 624, 913, 1380, 1419, 1767, 1876
BspACI	CCGC	5 cut(s)	186, 269, 454, 585, 1727
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	290
BspLI	GGNNCC	6 cut(s)	273, 312, 458, 591, 1296, 1633
BspPI	GGATC	3 cut(s)	326, 1388, 1427
BspQI	GCTCTTC	2 cut(s)	420, 1808
BsrBI	CCGCTC	1 cut(s)	1727
BsrDI	GCAATG	4 cut(s)	823, 1005, 1177, 1514
BsrFI	RCCGGY	1 cut(s)	992
BsrI	ACTGG	3 cut(s)	202, 1296, 1414
BssAI	RCCGGY	1 cut(s)	992
BssECI	CCNNGG	5 cut(s)	180, 314, 334, 513, 1085
BssMI	GATC	7 cut(s)	318, 624, 913, 1380, 1419, 1767, 1876
BssNI	GRCGYC	2 cut(s)	76, 719
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	1352
Bst4CI	ACNGT	2 cut(s)	338, 362
Bst6I	CTCTTC	4 cut(s)	215, 420, 482, 1808
BstACI	GRCGYC	2 cut(s)	76, 719
BstC8I	GCNNGC	3 cut(s)	6, 10, 787
BstDEI	CTNAG	1 cut(s)	374
BstDSI	CCRYGG	2 cut(s)	180, 334
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	5 cut(s)	334, 652, 703, 906, 1195
BstHHI	GCGC	1 cut(s)	1575
BstKTI	GATC	7 cut(s)	321, 627, 916, 1383, 1422, 1770, 1879
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	7 cut(s)	318, 624, 913, 1380, 1419, 1767, 1876
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 944, 1733, 1742
BstNI	CCWGG	1 cut(s)	1352
BstNSI	RCATGY	1 cut(s)	1166
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	3 cut(s)	313, 435, 1350
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	6 cut(s)	716, 1046, 1143, 1476, 1499, 1502
BstX2I	RGATCY	2 cut(s)	318, 1380
BstXI	CCANNNNNNTGG	1 cut(s)	1366
BstYI	RGATCY	2 cut(s)	318, 1380
Bsu36I	CCTNAGG	1 cut(s)	374
BsuI	GTATCC	2 cut(s)	613, 1363
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	2 cut(s)	180, 334
BtgZI	GCGATG	1 cut(s)	693
BtsCI	GGATG	5 cut(s)	334, 652, 703, 906, 1195
BtsIMutI	CAGTG	4 cut(s)	666, 756, 1050, 1421
Cac8I	GCNNGC	3 cut(s)	6, 10, 787
CfoI	GCGC	1 cut(s)	1575
Cfr10I	RCCGGY	1 cut(s)	992
Cfr13I	GGNCC	3 cut(s)	271, 311, 1294
CseI	GACGC	1 cut(s)	727
Csp6I	GTAC	3 cut(s)	730, 1309, 1477
CspAI	ACCGGT	1 cut(s)	992
CviAII	CATG	7 cut(s)	151, 450, 813, 1163, 1537, 1578, 1890
CviQI	GTAC	3 cut(s)	730, 1309, 1477
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	7 cut(s)	320, 626, 915, 1382, 1421, 1769, 1878
DpnII	GATC	7 cut(s)	318, 624, 913, 1380, 1419, 1767, 1876
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	4 cut(s)	215, 420, 482, 1808
EarI	CTCTTC	4 cut(s)	215, 420, 482, 1808
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	3 cut(s)	271, 311, 1294
Eco57I	CTGAAG	2 cut(s)	307, 506
Eco81I	CCTNAGG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoRI	GAATTC	2 cut(s)	899, 1201
EcoRII	CCWGG	1 cut(s)	1350
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	7 cut(s)	154, 453, 816, 1166, 1540, 1581, 1893
FalI	AAGNNNNNCTT	2 cut(s)	1754, 1786
FaqI	GGGAC	3 cut(s)	209, 257, 324
FatI	CATG	7 cut(s)	150, 449, 812, 1162, 1536, 1577, 1889
FauI	CCCGC	1 cut(s)	578
FauNDI	CATATG	1 cut(s)	1531
FbaI	TGATCA	1 cut(s)	913
Fnu4HI	GCNGC	8 cut(s)	186, 705, 1035, 1157, 1465, 1488, 1491, 1728
FokI	GGATG	5 cut(s)	341, 659, 710, 893, 1202
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	8 cut(s)	186, 705, 1035, 1157, 1465, 1488, 1491, 1728
FspAI	RTGCGCAY	1 cut(s)	1574
FspBI	CTAG	3 cut(s)	161, 540, 951
FspI	TGCGCA	1 cut(s)	1574
GlaI	GCGC	1 cut(s)	1574
GluI	GCNGC	8 cut(s)	186, 705, 1035, 1157, 1465, 1488, 1491, 1728
GsaI	CCCAGC	1 cut(s)	556
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	6 cut(s)	65, 291, 314, 437, 608, 993
HgaI	GACGC	1 cut(s)	727
HhaI	GCGC	1 cut(s)	1575
Hin1I	GRCGYC	2 cut(s)	76, 719
Hin1II	CATG	7 cut(s)	154, 453, 816, 1166, 1540, 1581, 1893
Hin6I	GCGC	1 cut(s)	1573
HinP1I	GCGC	1 cut(s)	1573
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HindIII	AAGCTT	2 cut(s)	980, 1221
HinfI	GANTC	8 cut(s)	247, 656, 869, 925, 1021, 1210, 1471, 1709
HpaII	CCGG	6 cut(s)	65, 291, 314, 437, 608, 993
HphI	GGTGA	6 cut(s)	39, 451, 529, 698, 1555, 1771
Hpy166II	GTNNAC	5 cut(s)	70, 156, 1048, 1248, 1289
Hpy188I	TCNGA	5 cut(s)	229, 461, 1207, 1432, 1636
Hpy188III	TCNNGA	8 cut(s)	161, 274, 291, 478, 628, 929, 1094, 1115
Hpy8I	GTNNAC	5 cut(s)	70, 156, 1048, 1248, 1289
Hpy99I	CGWCG	3 cut(s)	78, 263, 362
HpyAV	CCTTC	7 cut(s)	25, 257, 297, 575, 625, 1152, 1308
HpyCH4III	ACNGT	2 cut(s)	338, 362
HpyCH4IV	ACGT	4 cut(s)	76, 528, 987, 1788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 944, 1733, 1742
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	4 cut(s)	76, 528, 987, 1788
Hsp92I	GRCGYC	2 cut(s)	76, 719
Hsp92II	CATG	7 cut(s)	154, 453, 816, 1166, 1540, 1581, 1893
HspAI	GCGC	1 cut(s)	1573
Kpn2I	TCCGGA	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	913
Kzo9I	GATC	7 cut(s)	318, 624, 913, 1380, 1419, 1767, 1876
LguI	GCTCTTC	2 cut(s)	420, 1808
LmnI	GCTCC	3 cut(s)	17, 1144, 1724
Lsp1109I	GCAGC	6 cut(s)	716, 1046, 1143, 1476, 1499, 1502
LweI	GCATC	6 cut(s)	163, 471, 772, 915, 1536, 1723
MaeI	CTAG	3 cut(s)	161, 540, 951
MaeII	ACGT	4 cut(s)	76, 528, 987, 1788
MaeIII	GTNAC	5 cut(s)	244, 362, 439, 988, 1649
MalI	GATC	7 cut(s)	320, 626, 915, 1382, 1421, 1769, 1878
MbiI	CCGCTC	1 cut(s)	1727
MboI	GATC	7 cut(s)	318, 624, 913, 1380, 1419, 1767, 1876
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	2 cut(s)	318, 1380
MhlI	GDGCHC	3 cut(s)	72, 243, 432
MlyI	GAGTC	2 cut(s)	241, 1015
MmeI	TCCRAC	4 cut(s)	484, 597, 868, 1049
MroI	TCCGGA	1 cut(s)	290
MroXI	GAANNNNTTC	1 cut(s)	899
MseI	TTAA	7 cut(s)	741, 806, 879, 1313, 1409, 1778, 1925
MslI	CAYNNNNRTG	3 cut(s)	515, 1076, 1541
MspI	CCGG	6 cut(s)	65, 291, 314, 437, 608, 993
MspR9I	CCNGG	3 cut(s)	315, 437, 1352
MunI	CAATTG	1 cut(s)	1029
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	1352
MwoI	GCNNNNNNNGC	4 cut(s)	182, 944, 1733, 1742
NciI	CCSGG	2 cut(s)	315, 437
NdeI	CATATG	1 cut(s)	1531
NdeII	GATC	7 cut(s)	318, 624, 913, 1380, 1419, 1767, 1876
NlaIII	CATG	7 cut(s)	154, 453, 816, 1166, 1540, 1581, 1893
NlaIV	GGNNCC	6 cut(s)	273, 312, 458, 591, 1296, 1633
NmuCI	GTSAC	3 cut(s)	244, 362, 439
NsbI	TGCGCA	1 cut(s)	1574
NspI	RCATGY	1 cut(s)	1166
OliI	CACNNNNGTG	1 cut(s)	515
PciI	ACATGT	1 cut(s)	1162
PciSI	GCTCTTC	2 cut(s)	420, 1808
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	899
PfeI	GAWTC	6 cut(s)	656, 869, 925, 1210, 1471, 1709
PflMI	CCANNNNNTGG	1 cut(s)	450
PinAI	ACCGGT	1 cut(s)	992
PkrI	GCNGC	8 cut(s)	187, 706, 1036, 1158, 1466, 1489, 1492, 1729
Ple19I	CGATCG	1 cut(s)	627
PleI	GAGTC	2 cut(s)	241, 1015
PpsI	GAGTC	2 cut(s)	241, 1015
PscI	ACATGT	1 cut(s)	1162
PsiI	TTATAA	3 cut(s)	774, 1110, 1951
Psp6I	CCWGG	1 cut(s)	1350
PspEI	GGTNACC	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	1350
PspN4I	GGNNCC	6 cut(s)	273, 312, 458, 591, 1296, 1633
PspPI	GGNCC	3 cut(s)	271, 311, 1294
PsuI	RGATCY	2 cut(s)	318, 1380
PvuI	CGATCG	1 cut(s)	627
RsaI	GTAC	3 cut(s)	731, 1310, 1478
RsaNI	GTAC	3 cut(s)	730, 1309, 1477
RseI	CAYNNNNRTG	3 cut(s)	515, 1076, 1541
SapI	GCTCTTC	2 cut(s)	420, 1808
SaqAI	TTAA	7 cut(s)	741, 806, 879, 1313, 1409, 1778, 1925
SatI	GCNGC	8 cut(s)	186, 705, 1035, 1157, 1465, 1488, 1491, 1728
Sau3AI	GATC	7 cut(s)	318, 624, 913, 1380, 1419, 1767, 1876
Sau96I	GGNCC	3 cut(s)	271, 311, 1294
SchI	GAGTC	2 cut(s)	241, 1015
ScrFI	CCNGG	3 cut(s)	315, 437, 1352
SduI	GDGCHC	3 cut(s)	72, 243, 432
SfaNI	GCATC	6 cut(s)	163, 471, 772, 915, 1536, 1723
SinI	GGWCC	3 cut(s)	271, 311, 1294
SmiMI	CAYNNNNRTG	3 cut(s)	515, 1076, 1541
SpeI	ACTAGT	2 cut(s)	539, 950
SsiI	CCGC	5 cut(s)	186, 269, 454, 585, 1727
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	3 cut(s)	161, 540, 951
StyD4I	CCNGG	3 cut(s)	313, 435, 1350
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	338, 362
TaiI	ACGT	4 cut(s)	79, 531, 990, 1791
TatI	WGTACW	2 cut(s)	1308, 1476
TauI	GCSGC	2 cut(s)	188, 1730
TfiI	GAWTC	6 cut(s)	656, 869, 925, 1210, 1471, 1709
Tru1I	TTAA	7 cut(s)	741, 806, 879, 1313, 1409, 1778, 1925
Tru9I	TTAA	7 cut(s)	741, 806, 879, 1313, 1409, 1778, 1925
TscAI	CASTG	4 cut(s)	666, 756, 1050, 1421
TseFI	GTSAC	3 cut(s)	244, 362, 439
TseI	GCWGC	6 cut(s)	704, 1034, 1156, 1464, 1487, 1490
Tsp45I	GTSAC	3 cut(s)	244, 362, 439
TspDTI	ATGAA	7 cut(s)	138, 536, 876, 996, 1113, 1206, 1609
TspGWI	ACGGA	3 cut(s)	169, 747, 1796
TspRI	CASTG	4 cut(s)	666, 756, 1050, 1421
Van91I	CCANNNNNTGG	1 cut(s)	450
VneI	GTGCAC	1 cut(s)	68
VpaK11BI	GGWCC	3 cut(s)	271, 311, 1294
XapI	RAATTY	5 cut(s)	863, 874, 899, 1201, 1902
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	1 cut(s)	1166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1413
XmnI	GAANNNNTTC	1 cut(s)	899
XspI	CTAG	3 cut(s)	161, 540, 951
ZraI	GACGTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.