Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Reverse (-)

26309513 .. 26312165

Gene Structure 2653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTGCCCCTATCTTATTGTACTAGAATTCTTGGTATATATCTCTGCTGCCCTTATTATCTCAATTGCTATTGCTTTTACTACCAGCGCTGTTGCAGATCTACAGTTTCTGGATAGAATTCTTTTATCGCAATGGACTCTGATGAATTTTGAATATCTTCACTTATTGCTCGGCTATAGTTTGGAGTTTGGAGGCGTTGCTGTCACTGCCAAATCAATATTCCCGTCACTGATAAACATACCTACGGTGCACCGACAACACCGTTCTCCTTCTTTGCCACCCCTCCTCAAACCGCAATGTGCCATCTCTGCTTCTACTCCCAATGACGCCAAGAGTTCTACTCCAATTACCACGTCAACCCTAGAAGTTGTCGATGACTCCGTGGCTGCGTTCCGGGACTACCAATTTCTCTTTGTCTCTCAACGCTTTGAAACAAACGAGCCAATAACTCTACAAGTTGTTGAAGGTGCAGTCCCGCCAGAGTTTCCTTCAGGAACATATTACTTGACGGGACTGGGGCTCTTCAGAGACGACCACGGCTCAACGGTGCACCCTTTGGATGGTCACAGCTACCTTAGGGCTTTCACTTTCCATGAGGTTAGTAGGAAAGAGGTTAATGTCATGTTCATGGCCAAGTATGTGAAAATTGAGGTGCTGTTGGAAGAGCATGACCCCGTGACCGGTACGTGGCGGTTCATGCAAAGGGGAGCGTTCTCGGTGTTGACGGGAGGACAGAAAGTCAGGAACACTAAGGGTGGGAAGCTGATGTGCTTGTGGGAAGGTGGTGGGGAACCTTACGAAATTGAAAAGGAGACCTTGGAAACTGTGGGGAAGGTCAAGCTCATGGAAGGTTGTGATCCGGTGGTGAAGAGTGGATGTGGTGGCCGTAGTGTTTGGGATGTTGCTGTAAGATTGTTGAAGCCGATTCTGAATGGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

314

Amino Acids

34.68

Weight (kDa)

5.92

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	139 - 281	3.1e-19	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	293, 476, 691
AclWI	GGATC	1 cut(s)	851
AcoI	YGGCCR	2 cut(s)	630, 883
AcsI	RAATTY	3 cut(s)	26, 117, 145
AcuI	CTGAAG	2 cut(s)	474, 508
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	21, 685
AfeI	AGCGCT	1 cut(s)	88
AfiI	CCNNNNNNNGG	3 cut(s)	560, 680, 687
AgeI	ACCGGT	1 cut(s)	680
AgsI	TTSAA	5 cut(s)	152, 431, 464, 806, 919
AhdI	GACNNNNNGTC	1 cut(s)	737
AjiI	CACGTC	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	3 cut(s)	570, 763, 841
AluI	AGCT	3 cut(s)	570, 763, 841
Alw21I	GWGCWC	2 cut(s)	252, 552
Alw26I	GTCTC	3 cut(s)	421, 522, 806
Alw44I	GTGCAC	2 cut(s)	248, 548
AlwI	GGATC	1 cut(s)	851
AlwNI	CAGNNNCTG	1 cut(s)	109
Aor51HI	AGCGCT	1 cut(s)	88
AoxI	GGCC	2 cut(s)	630, 883
ApaLI	GTGCAC	2 cut(s)	248, 548
ApeKI	GCWGC	2 cut(s)	47, 386
ApoI	RAATTY	3 cut(s)	26, 117, 145
AsiGI	ACCGGT	1 cut(s)	680
Asp700I	GAANNNNTTC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	877
AxyI	CCTNAGG	1 cut(s)	575
BaeGI	GKGCMC	3 cut(s)	8, 252, 552
BalI	TGGCCA	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	522
Bbv12I	GWGCWC	2 cut(s)	252, 552
BbvI	GCAGC	2 cut(s)	34, 373
BccI	CCATC	2 cut(s)	311, 554
BceAI	ACGGC	2 cut(s)	553, 870
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	421, 522, 806
BfaI	CTAG	2 cut(s)	23, 362
BfmI	CTRYAG	2 cut(s)	101, 175
BfoI	RGCGCY	1 cut(s)	90
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	2 cut(s)	48, 387
BlsI	GCNGC	2 cut(s)	49, 388
Bme1390I	CCNGG	1 cut(s)	395
BmeRI	GACNNNNNGTC	1 cut(s)	737
BmgBI	CACGTC	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	524
BmuI	ACTGGG	1 cut(s)	524
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpuMI	CCSGG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	687
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	806
BsaJI	CCNNGG	3 cut(s)	381, 535, 816
BsaWI	WCCGGW	2 cut(s)	680, 859
Bsc4I	CCNNNNNNNGG	3 cut(s)	560, 680, 687
Bse118I	RCCGGY	1 cut(s)	680
Bse1I	ACTGG	1 cut(s)	519
Bse21I	CCTNAGG	1 cut(s)	575
Bse3DI	GCAATG	2 cut(s)	137, 302
BseDI	CCNNGG	3 cut(s)	381, 535, 816
BseGI	GGATG	3 cut(s)	565, 881, 904
BseLI	CCNNNNNNNGG	3 cut(s)	560, 680, 687
BseMI	GCAATG	2 cut(s)	137, 302
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	3 cut(s)	8, 252, 552
BseXI	GCAGC	2 cut(s)	34, 373
BsgI	GTGCAG	1 cut(s)	489
BshFI	GGCC	2 cut(s)	632, 885
BshTI	ACCGGT	1 cut(s)	680
BsiHKAI	GWGCWC	2 cut(s)	252, 552
BsiSI	CCGG	3 cut(s)	394, 681, 860
BslFI	GGGAC	3 cut(s)	410, 458, 525
BslI	CCNNNNNNNGG	3 cut(s)	560, 680, 687
BsmAI	GTCTC	3 cut(s)	421, 522, 806
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	3 cut(s)	410, 458, 525
BsnI	GGCC	2 cut(s)	632, 885
Bso31I	GGTCTC	1 cut(s)	806
Bsp1286I	GDGCHC	4 cut(s)	8, 252, 522, 552
Bsp143I	GATC	2 cut(s)	97, 856
BspACI	CCGC	3 cut(s)	293, 476, 691
BspANI	GGCC	2 cut(s)	632, 885
BspLI	GGNNCC	1 cut(s)	792
BspPI	GGATC	1 cut(s)	851
BspQI	GCTCTTC	2 cut(s)	527, 657
BspTNI	GGTCTC	1 cut(s)	806
BsrDI	GCAATG	2 cut(s)	137, 302
BsrFI	RCCGGY	1 cut(s)	680
BsrI	ACTGG	1 cut(s)	519
BssAI	RCCGGY	1 cut(s)	680
BssECI	CCNNGG	3 cut(s)	381, 535, 816
BssMI	GATC	2 cut(s)	97, 856
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	816
Bst4CI	ACNGT	5 cut(s)	105, 247, 263, 547, 826
Bst6I	CTCTTC	3 cut(s)	527, 657, 863
BstACI	GRCGYC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	687
BstDEI	CTNAG	2 cut(s)	575, 750
BstDSI	CCRYGG	2 cut(s)	381, 535
BstF5I	GGATG	3 cut(s)	565, 881, 904
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	100, 859
BstMAI	GTCTC	3 cut(s)	421, 522, 806
BstMBI	GATC	2 cut(s)	97, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 308, 697
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	101, 175
BstSLI	GKGCMC	3 cut(s)	8, 252, 552
BstV1I	GCAGC	2 cut(s)	34, 373
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
Bsu36I	CCTNAGG	1 cut(s)	575
BsuRI	GGCC	2 cut(s)	632, 885
BtgI	CCRYGG	2 cut(s)	381, 535
BtrI	CACGTC	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	565, 881, 904
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 227
CaiI	CAGNNNCTG	1 cut(s)	109
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	680
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	20, 684
CspAI	ACCGGT	1 cut(s)	680
CviAII	CATG	6 cut(s)	593, 622, 628, 668, 697, 844
CviQI	GTAC	2 cut(s)	20, 684
DdeI	CTNAG	2 cut(s)	575, 750
DpnI	GATC	2 cut(s)	99, 858
DpnII	GATC	2 cut(s)	97, 856
DriI	GACNNNNNGTC	1 cut(s)	737
EaeI	YGGCCR	2 cut(s)	630, 883
Eam1104I	CTCTTC	3 cut(s)	527, 657, 863
Eam1105I	GACNNNNNGTC	1 cut(s)	737
EarI	CTCTTC	3 cut(s)	527, 657, 863
Eco130I	CCWWGG	1 cut(s)	816
Eco24I	GRGCYC	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	806
Eco47III	AGCGCT	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	474, 508
Eco81I	CCTNAGG	1 cut(s)	575
EcoRI	GAATTC	2 cut(s)	26, 117
EcoT14I	CCWWGG	1 cut(s)	816
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	816
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	6 cut(s)	596, 625, 631, 671, 700, 847
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FaqI	GGGAC	3 cut(s)	410, 458, 525
FatI	CATG	6 cut(s)	592, 621, 627, 667, 696, 843
FauI	CCCGC	1 cut(s)	483
Fnu4HI	GCNGC	2 cut(s)	48, 387
FokI	GGATG	3 cut(s)	572, 888, 911
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	2 cut(s)	48, 387
FspBI	CTAG	2 cut(s)	23, 362
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	2 cut(s)	48, 387
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	632, 885
HapII	CCGG	3 cut(s)	394, 681, 860
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	6 cut(s)	596, 625, 631, 671, 700, 847
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	2 cut(s)	357, 723
HindII	GTYRAC	2 cut(s)	357, 723
HinfI	GANTC	3 cut(s)	136, 377, 925
HpaII	CCGG	3 cut(s)	394, 681, 860
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	4 cut(s)	250, 357, 550, 723
Hpy188I	TCNGA	3 cut(s)	141, 527, 930
Hpy188III	TCNNGA	3 cut(s)	110, 492, 742
Hpy8I	GTNNAC	4 cut(s)	250, 357, 550, 723
HpyAV	CCTTC	6 cut(s)	279, 458, 498, 773, 826, 842
HpyCH4III	ACNGT	5 cut(s)	105, 247, 263, 547, 826
HpyCH4IV	ACGT	2 cut(s)	353, 686
HpyCH4V	TGCA	5 cut(s)	95, 250, 470, 550, 700
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 308, 697
HpyF3I	CTNAG	2 cut(s)	575, 750
HpySE526I	ACGT	2 cut(s)	353, 686
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	6 cut(s)	596, 625, 631, 671, 700, 847
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	97, 856
LguI	GCTCTTC	2 cut(s)	527, 657
LmnI	GCTCC	1 cut(s)	707
LpnPI	CCDG	9 cut(s)	95, 97, 407, 477, 492, 500, 694, 727, 873
Lsp1109I	GCAGC	2 cut(s)	34, 373
MaeI	CTAG	2 cut(s)	23, 362
MaeII	ACGT	2 cut(s)	353, 686
MaeIII	GTNAC	4 cut(s)	202, 225, 563, 676
MalI	GATC	2 cut(s)	99, 858
MboI	GATC	2 cut(s)	97, 856
MboII	GAAGA	4 cut(s)	149, 514, 674, 880
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	4 cut(s)	8, 252, 522, 552
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	8 cut(s)	26, 63, 117, 145, 345, 404, 645, 801
MluNI	TGGCCA	1 cut(s)	632
MlyI	GAGTC	2 cut(s)	130, 371
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	7 cut(s)	185, 293, 296, 589, 604, 643, 722
Mox20I	TGGCCA	1 cut(s)	632
MroXI	GAANNNNTTC	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	632
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	1 cut(s)	626
Msp20I	TGGCCA	1 cut(s)	632
MspI	CCGG	3 cut(s)	394, 681, 860
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	206, 308, 697
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	2 cut(s)	97, 856
NlaIII	CATG	6 cut(s)	596, 625, 631, 671, 700, 847
NlaIV	GGNNCC	1 cut(s)	792
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	4 cut(s)	202, 225, 563, 676
PciSI	GCTCTTC	2 cut(s)	527, 657
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	925
PfoI	TCCNGGA	1 cut(s)	393
PinAI	ACCGGT	1 cut(s)	680
PkrI	GCNGC	2 cut(s)	49, 388
PleI	GAGTC	2 cut(s)	130, 371
PpsI	GAGTC	2 cut(s)	130, 371
Ppu21I	YACGTR	1 cut(s)	687
PspN4I	GGNNCC	1 cut(s)	792
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	2 cut(s)	21, 685
RsaNI	GTAC	2 cut(s)	20, 684
RseI	CAYNNNNRTG	1 cut(s)	626
SapI	GCTCTTC	2 cut(s)	527, 657
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	2 cut(s)	48, 387
Sau3AI	GATC	2 cut(s)	97, 856
SchI	GAGTC	2 cut(s)	130, 371
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	4 cut(s)	8, 252, 522, 552
SfcI	CTRYAG	2 cut(s)	101, 175
SmiMI	CAYNNNNRTG	1 cut(s)	626
Sse9I	AATT	8 cut(s)	26, 63, 117, 145, 345, 404, 645, 801
SsiI	CCGC	3 cut(s)	293, 476, 691
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	2 cut(s)	23, 362
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	5 cut(s)	105, 247, 263, 547, 826
TaiI	ACGT	2 cut(s)	356, 689
TaqI	TCGA	1 cut(s)	372
TasI	AATT	8 cut(s)	26, 63, 117, 145, 345, 404, 645, 801
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	925
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	2 cut(s)	211, 234
TseFI	GTSAC	4 cut(s)	202, 225, 563, 676
TseI	GCWGC	2 cut(s)	47, 386
Tsp45I	GTSAC	4 cut(s)	202, 225, 563, 676
TspDTI	ATGAA	3 cut(s)	158, 616, 685
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	2 cut(s)	211, 234
VneI	GTGCAC	2 cut(s)	248, 548
XapI	RAATTY	3 cut(s)	26, 117, 145
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	2 cut(s)	23, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.