Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Reverse (-)

28197690 .. 28201417

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

ATGGAAGTACTACTCCGACCACCACCGTTTCGACCCCAGACTTGGTCGATGACTCCGTTGCCGCATTCTGGGACTACCCAGTTCCTCTTCGTCTCGCAACGCTCTGAAACAACCGAACCGGTGACACTCCGAGTGGTTGAAGGCGCAGTCCCGCCGGAGTTTCCTTCCGGAACGTACTACTTGACGGGACCGGGGCTCTTCAGCGACGACCATGGCTCCACTGTGCACCCTTTGGACGGTCACGGCTACCTCAGGGCTTTTAGGTTTGATGGGATTAATGGGGACGAGGTGAAGGTCAAGTTCATGGCCAAGTACGTGAAGACTGAGGCGCAGGGAGGACAGAAAGTTGGGAACACTAAGGTGATGAAGAATGTGGCGAATACTAGTGTGTTGAGCTGGGGCGGGAGGCTGTTGTGCTTGTGGGAAGGTGGCGACCCGTATGAGATTGAACCGGAGACTTTGGCTACTGTCGGGAAGGTCAAGCTGATGGAGGGTTGTGATCCGGTGGTGGAGAGTGGTGGCGGTGGCGGTGGCGTATGGGATGTTGCTGCGAGGCTGCTGAAGCCGATATTGTACGGAGTATTTAAAATGCCACCTAAGCGACTATTATCTCATTACAAGCTGGACACTTGCAAAAATCGGCTTCTTATGATGTCGTGCAATGCAGAAGATATGCTTCTGCCACGCAGTCATTTTACATTTTATGAATTTGACTCAAGTTTTAAGGAGGTGGCAAAGCAAGAGTTTACCATCCCAGATCACTTGATGATCCATGACTGGGCTTTCACTGACACTCATTATATCTTATTTGCTAATCGCATCAAGCTTGATGTTGTCGGTGCAATGACTGCAGTCTGTGGGACTACACCGATGATAACAGCATTATCAGTAAACCCTAGCAAGGACACTTCTCCCATATACTTGCTTCCTCGCTTTCCCGATGAAGTGAATTATAATCGAGATTGGAGAGTGCCTATTGAAGCTCCTTCACAGTTTTGGCTGCTACATGTATGCAATGCCTATGAGAATTTGGATGAGAATGGGAATTCGGAGATCCAAATACACGGTTCTGCTTGCTCATACGAGTGGTTCAATTTCCAAAAGTTATTTGGATATGATTGGCAAAGTGGTAAACTAGACCCTTCGGTTATGAACATAAATGGAAGCCAAAGCAAGACATTGCCTCACCTTGTTCAGGTTTCCATCAACTTGGATGCCAATGGGAACTGTCAAAGATGTGATGCGGAGCCTTTGAACGAGTGGAACAAGTCATCAGATTTTCCAGTGATCAATCCAGCATTTTCAGGCAGCAAAAACAAATACATATATGCAGCAGCTTCTTCGGGTTCTCGCAGTGCATTGCCAAGCTTTCCATTTGACATGGTGGTGAAGCTGAATGCTTCAACTAAATCTGTGCACACATGGTCTGTTGGTAGTAGAAGATTTATCGGAGAACCCACTTTCATCTCCAAAGGTTCTGAAGAAGATGAAGGTTACATTCTTGTAGTCGAGTATGCAGTTGCAGTTCAAAGGTGCTATCTGGTTATCTTGGATTCGAAGAAGATTGGAGCAGCTGATGCACTTGTGGCAAGACTAGAAGTCCCCAAGCACCTAAATTTTCCTCTTGGTTTTCATGGTTTTTGGGCTAGTGACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

552

Amino Acids

61.49

Weight (kDa)

6.03

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	31 - 549	1.1e-88	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	954
AccIII	TCCGGA	1 cut(s)	167
AciI	CCGC	6 cut(s)	62, 152, 402, 522, 528, 1244
AclWI	GGATC	3 cut(s)	494, 763, 1048
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	4 cut(s)	707, 1027, 1045, 1615
AcuI	CTGAAG	3 cut(s)	184, 581, 1500
AfaI	GTAC	4 cut(s)	9, 176, 314, 575
AfiI	CCNNNNNNNGG	6 cut(s)	42, 68, 236, 778, 901, 1195
AflIII	ACRYGT	1 cut(s)	1006
AgeI	ACCGGT	1 cut(s)	118
AgsI	TTSAA	7 cut(s)	140, 449, 980, 1093, 1255, 1404, 1529
AhdI	GACNNNNNGTC	1 cut(s)	1598
AhlI	ACTAGT	1 cut(s)	383
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	9 cut(s)	396, 484, 622, 826, 983, 1337, 1368, 1393, 1574
AluI	AGCT	9 cut(s)	396, 484, 622, 826, 983, 1337, 1368, 1393, 1574
Alw21I	GWGCWC	2 cut(s)	228, 1419
Alw26I	GTCTC	2 cut(s)	97, 449
Alw44I	GTGCAC	2 cut(s)	224, 1415
AlwI	GGATC	3 cut(s)	494, 763, 1048
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	1 cut(s)	306
ApaLI	GTGCAC	2 cut(s)	224, 1415
ApeKI	GCWGC	7 cut(s)	548, 556, 1000, 1308, 1331, 1334, 1571
ApoI	RAATTY	4 cut(s)	707, 1027, 1045, 1615
AseI	ATTAAT	1 cut(s)	276
AsiGI	ACCGGT	1 cut(s)	118
AspLEI	GCGC	2 cut(s)	146, 331
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	5 cut(s)	133, 301, 373, 1178, 1399
AsuII	TTCGAA	1 cut(s)	1556
AvaII	GGWCC	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	251
BaeGI	GKGCMC	2 cut(s)	228, 1419
BalI	TGGCCA	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	2 cut(s)	228, 1419
BbvI	GCAGC	7 cut(s)	535, 543, 987, 1320, 1343, 1346, 1583
BccI	CCATC	4 cut(s)	263, 481, 758, 1211
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	1323, 1357
BclI	TGATCA	1 cut(s)	1287
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	2 cut(s)	97, 449
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	5 cut(s)	384, 897, 1136, 1595, 1647
BfmI	CTRYAG	1 cut(s)	849
BisI	GCNGC	8 cut(s)	62, 549, 557, 1001, 1309, 1332, 1335, 1572
BlsI	GCNGC	8 cut(s)	63, 550, 558, 1002, 1310, 1333, 1336, 1573
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	188
BmeRI	GACNNNNNGTC	1 cut(s)	1598
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	3 cut(s)	189, 217, 1248
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	2 cut(s)	73, 787
BmsI	GCATC	4 cut(s)	828, 1204, 1231, 1567
BmuI	ACTGGG	2 cut(s)	73, 787
BoxI	GACNNNNGTC	1 cut(s)	851
BpiI	GAAGAC	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu14I	TTCGAA	1 cut(s)	1556
BpuEI	CTTGAG	1 cut(s)	700
BpuMI	CCSGG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	191, 211
BsaWI	WCCGGW	4 cut(s)	118, 167, 451, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	6 cut(s)	42, 68, 236, 778, 901, 1195
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	3 cut(s)	79, 782, 1283
Bse21I	CCTNAGG	1 cut(s)	251
Bse3DI	GCAATG	5 cut(s)	667, 849, 1021, 1178, 1358
BseAI	TCCGGA	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	191, 211
BseGI	GGATG	4 cut(s)	547, 750, 1039, 1219
BseLI	CCNNNNNNNGG	6 cut(s)	42, 68, 236, 778, 901, 1195
BseMI	GCAATG	5 cut(s)	667, 849, 1021, 1178, 1358
BseMII	CTCAG	2 cut(s)	265, 315
BseNI	ACTGG	3 cut(s)	79, 782, 1283
BseSI	GKGCMC	2 cut(s)	228, 1419
BseXI	GCAGC	7 cut(s)	535, 543, 987, 1320, 1343, 1346, 1583
BseYI	CCCAGC	1 cut(s)	396
BshFI	GGCC	1 cut(s)	308
BshTI	ACCGGT	1 cut(s)	118
BsiHKAI	GWGCWC	2 cut(s)	228, 1419
BsiSI	CCGG	6 cut(s)	119, 155, 168, 191, 452, 503
BslFI	GGGAC	6 cut(s)	85, 134, 201, 296, 874, 1586
BslI	CCNNNNNNNGG	6 cut(s)	42, 68, 236, 778, 901, 1195
BsmAI	GTCTC	2 cut(s)	97, 449
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	6 cut(s)	85, 134, 201, 296, 874, 1586
BsmI	GAATGC	2 cut(s)	64, 1402
BsnI	GGCC	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	1556
Bsp1286I	GDGCHC	3 cut(s)	198, 228, 1419
Bsp13I	TCCGGA	1 cut(s)	167
Bsp143I	GATC	5 cut(s)	499, 757, 768, 1053, 1287
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	6 cut(s)	62, 152, 402, 522, 528, 1244
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	2 cut(s)	264, 316
BspEI	TCCGGA	1 cut(s)	167
BspLI	GGNNCC	3 cut(s)	189, 217, 1248
BspMAI	CTGCAG	1 cut(s)	853
BspPI	GGATC	3 cut(s)	494, 763, 1048
BspQI	GCTCTTC	1 cut(s)	203
BspT104I	TTCGAA	1 cut(s)	1556
BsrDI	GCAATG	5 cut(s)	667, 849, 1021, 1178, 1358
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	3 cut(s)	79, 782, 1283
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	191, 211
BssMI	GATC	5 cut(s)	499, 757, 768, 1053, 1287
BssT1I	CCWWGG	1 cut(s)	211
Bst4CI	ACNGT	7 cut(s)	27, 223, 239, 469, 993, 1067, 1229
Bst6I	CTCTTC	2 cut(s)	92, 203
BstAPI	GCANNNNNTGC	2 cut(s)	848, 1577
BstBAI	YACGTR	1 cut(s)	316
BstBI	TTCGAA	1 cut(s)	1556
BstC8I	GCNNGC	1 cut(s)	1075
BstDEI	CTNAG	4 cut(s)	251, 324, 357, 597
BstDSI	CCRYGG	1 cut(s)	211
BstENI	CCTNNNNNAGG	1 cut(s)	1193
BstF5I	GGATG	4 cut(s)	547, 750, 1039, 1219
BstHHI	GCGC	2 cut(s)	146, 331
BstKTI	GATC	5 cut(s)	502, 760, 771, 1056, 1290
BstMAI	GTCTC	2 cut(s)	97, 449
BstMBI	GATC	5 cut(s)	499, 757, 768, 1053, 1287
BstMWI	GCNNNNNNNGC	5 cut(s)	562, 598, 848, 1577, 1586
BstNSI	RCATGY	1 cut(s)	1010
BstPAI	GACNNNNGTC	1 cut(s)	851
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	849
BstSLI	GKGCMC	2 cut(s)	228, 1419
BstV1I	GCAGC	7 cut(s)	535, 543, 987, 1320, 1343, 1346, 1583
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	1053
BstXI	CCANNNNNNTGG	1 cut(s)	1210
BstYI	RGATCY	1 cut(s)	1053
Bsu36I	CCTNAGG	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	4 cut(s)	547, 750, 1039, 1219
BtsI	GCAGTG	1 cut(s)	1360
BtsIMutI	CAGTG	4 cut(s)	219, 786, 1290, 1360
Cac8I	GCNNGC	1 cut(s)	1075
CfoI	GCGC	2 cut(s)	146, 331
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	4 cut(s)	8, 175, 313, 574
CspAI	ACCGGT	1 cut(s)	118
CviAII	CATG	7 cut(s)	212, 304, 773, 1007, 1381, 1422, 1634
CviQI	GTAC	4 cut(s)	8, 175, 313, 574
DdeI	CTNAG	4 cut(s)	251, 324, 357, 597
DpnI	GATC	5 cut(s)	501, 759, 770, 1055, 1289
DpnII	GATC	5 cut(s)	499, 757, 768, 1053, 1287
DraI	TTTAAA	1 cut(s)	586
DriI	GACNNNNNGTC	1 cut(s)	1598
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	2 cut(s)	92, 203
Eam1105I	GACNNNNNGTC	1 cut(s)	1598
EarI	CTCTTC	2 cut(s)	92, 203
Eco130I	CCWWGG	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	3 cut(s)	184, 581, 1500
Eco81I	CCTNAGG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	1193
EcoRI	GAATTC	1 cut(s)	1045
EcoT14I	CCWWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	7 cut(s)	215, 307, 776, 1010, 1384, 1425, 1637
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FaqI	GGGAC	6 cut(s)	85, 134, 201, 296, 874, 1586
FatI	CATG	7 cut(s)	211, 303, 772, 1006, 1380, 1421, 1633
FauI	CCCGC	2 cut(s)	159, 395
FbaI	TGATCA	1 cut(s)	1287
Fnu4HI	GCNGC	8 cut(s)	62, 549, 557, 1001, 1309, 1332, 1335, 1572
FokI	GGATG	4 cut(s)	554, 737, 1046, 1226
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	8 cut(s)	62, 549, 557, 1001, 1309, 1332, 1335, 1572
FspBI	CTAG	5 cut(s)	384, 897, 1136, 1595, 1647
GlaI	GCGC	2 cut(s)	145, 330
GluI	GCNGC	8 cut(s)	62, 549, 557, 1001, 1309, 1332, 1335, 1572
GsaI	CCCAGC	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	6 cut(s)	119, 155, 168, 191, 452, 503
HhaI	GCGC	2 cut(s)	146, 331
Hin1II	CATG	7 cut(s)	215, 307, 776, 1010, 1384, 1425, 1637
Hin6I	GCGC	2 cut(s)	144, 329
HinP1I	GCGC	2 cut(s)	144, 329
HindIII	AAGCTT	2 cut(s)	824, 1366
HinfI	GANTC	3 cut(s)	52, 713, 1553
HpaII	CCGG	6 cut(s)	119, 155, 168, 191, 452, 503
HphI	GGTGA	5 cut(s)	133, 301, 373, 1178, 1399
Hpy166II	GTNNAC	5 cut(s)	226, 747, 892, 1133, 1417
Hpy188I	TCNGA	7 cut(s)	17, 106, 131, 1051, 1276, 1451, 1480
Hpy188III	TCNNGA	4 cut(s)	168, 472, 938, 959
Hpy8I	GTNNAC	5 cut(s)	226, 747, 892, 1133, 1417
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	8 cut(s)	134, 174, 286, 419, 469, 996, 1152, 1484
HpyCH4III	ACNGT	7 cut(s)	27, 223, 239, 469, 993, 1067, 1229
HpyCH4IV	ACGT	2 cut(s)	173, 315
HpyF10VI	GCNNNNNNNGC	5 cut(s)	562, 598, 848, 1577, 1586
HpyF3I	CTNAG	4 cut(s)	251, 324, 357, 597
HpySE526I	ACGT	2 cut(s)	173, 315
Hsp92II	CATG	7 cut(s)	215, 307, 776, 1010, 1384, 1425, 1637
HspAI	GCGC	2 cut(s)	144, 329
Kpn2I	TCCGGA	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	1287
Kzo9I	GATC	5 cut(s)	499, 757, 768, 1053, 1287
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	4 cut(s)	221, 988, 1246, 1568
Lsp1109I	GCAGC	7 cut(s)	535, 543, 987, 1320, 1343, 1346, 1583
LweI	GCATC	4 cut(s)	828, 1204, 1231, 1567
MaeI	CTAG	5 cut(s)	384, 897, 1136, 1595, 1647
MaeII	ACGT	2 cut(s)	173, 315
MaeIII	GTNAC	4 cut(s)	121, 239, 1493, 1649
MalI	GATC	5 cut(s)	501, 759, 770, 1055, 1289
MboI	GATC	5 cut(s)	499, 757, 768, 1053, 1287
MflI	RGATCY	1 cut(s)	1053
MhlI	GDGCHC	3 cut(s)	198, 228, 1419
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	6 cut(s)	707, 949, 1027, 1045, 1093, 1615
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	2 cut(s)	46, 707
MmeI	TCCRAC	1 cut(s)	40
Mox20I	TGGCCA	1 cut(s)	308
MroI	TCCGGA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	3 cut(s)	276, 585, 723
MslI	CAYNNNNRTG	3 cut(s)	359, 1084, 1385
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	1574
MspI	CCGG	6 cut(s)	119, 155, 168, 191, 452, 503
MspR9I	CCNGG	1 cut(s)	192
Mva1269I	GAATGC	2 cut(s)	64, 1402
MwoI	GCNNNNNNNGC	5 cut(s)	562, 598, 848, 1577, 1586
NciI	CCSGG	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	5 cut(s)	499, 757, 768, 1053, 1287
NlaIII	CATG	7 cut(s)	215, 307, 776, 1010, 1384, 1425, 1637
NlaIV	GGNNCC	3 cut(s)	189, 217, 1248
NmuCI	GTSAC	3 cut(s)	121, 239, 1649
NspI	RCATGY	1 cut(s)	1010
NspV	TTCGAA	1 cut(s)	1556
OliI	CACNNNNGTG	1 cut(s)	359
PciI	ACATGT	1 cut(s)	1006
PciSI	GCTCTTC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	2 cut(s)	64, 1402
PfeI	GAWTC	1 cut(s)	1553
PflFI	GACNNNGTC	1 cut(s)	43
PinAI	ACCGGT	1 cut(s)	118
PkrI	GCNGC	8 cut(s)	63, 550, 558, 1002, 1310, 1333, 1336, 1573
PleI	GAGTC	2 cut(s)	46, 707
PpsI	GAGTC	2 cut(s)	46, 707
Ppu21I	YACGTR	1 cut(s)	316
PscI	ACATGT	1 cut(s)	1006
PshAI	GACNNNNGTC	1 cut(s)	851
PshBI	ATTAAT	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	954
PspFI	CCCAGC	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	189, 217, 1248
PspPI	GGNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	853
PsuI	RGATCY	1 cut(s)	1053
PsyI	GACNNNGTC	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	1574
RsaI	GTAC	4 cut(s)	9, 176, 314, 575
RsaNI	GTAC	4 cut(s)	8, 175, 313, 574
RseI	CAYNNNNRTG	3 cut(s)	359, 1084, 1385
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	3 cut(s)	276, 585, 723
SatI	GCNGC	8 cut(s)	62, 549, 557, 1001, 1309, 1332, 1335, 1572
Sau3AI	GATC	5 cut(s)	499, 757, 768, 1053, 1287
Sau96I	GGNCC	1 cut(s)	188
ScaI	AGTACT	1 cut(s)	9
SchI	GAGTC	2 cut(s)	46, 707
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	3 cut(s)	198, 228, 1419
SfaNI	GCATC	4 cut(s)	828, 1204, 1231, 1567
SfcI	CTRYAG	1 cut(s)	849
SfuI	TTCGAA	1 cut(s)	1556
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	3 cut(s)	359, 1084, 1385
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	6 cut(s)	707, 949, 1027, 1045, 1093, 1615
SsiI	CCGC	6 cut(s)	62, 152, 402, 522, 528, 1244
SspMI	CTAG	5 cut(s)	384, 897, 1136, 1595, 1647
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	7 cut(s)	27, 223, 239, 469, 993, 1067, 1229
TaiI	ACGT	2 cut(s)	176, 318
TaqI	TCGA	5 cut(s)	31, 47, 958, 1509, 1556
TasI	AATT	6 cut(s)	707, 949, 1027, 1045, 1093, 1615
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	1553
Tru1I	TTAA	3 cut(s)	276, 585, 723
Tru9I	TTAA	3 cut(s)	276, 585, 723
TscAI	CASTG	4 cut(s)	226, 793, 1290, 1360
TseFI	GTSAC	3 cut(s)	121, 239, 1649
TseI	GCWGC	7 cut(s)	548, 556, 1000, 1308, 1331, 1334, 1571
Tsp45I	GTSAC	3 cut(s)	121, 239, 1649
TspDTI	ATGAA	8 cut(s)	292, 380, 720, 957, 1166, 1453, 1503, 1622
TspGWI	ACGGA	2 cut(s)	45, 591
TspRI	CASTG	4 cut(s)	226, 793, 1290, 1360
Tth111I	GACNNNGTC	1 cut(s)	43
VneI	GTGCAC	2 cut(s)	224, 1415
VpaK11BI	GGWCC	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	276
XagI	CCTNNNNNAGG	1 cut(s)	1193
XapI	RAATTY	4 cut(s)	707, 1027, 1045, 1615
XceI	RCATGY	1 cut(s)	1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1106
XspI	CTAG	5 cut(s)	384, 897, 1136, 1595, 1647
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.