Rh1AG095900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001225
Physical Location & Seq
Reverse (-)
16751358 .. 16752466
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG095900.1

Sequence Viewer

Length: 390 bp
ATGGGTCTCCCTTTCTTAAAGAAAATAGGGAATCATGAGTGCACCACTCTCTCTTGTCGTCCAAGCATGATGCTTTCAGTTCACTTTCTGTTCCCAGTGAACTCACCACCTCTGCAACTCAAACCATCAGAAGATCATTATCGATCATCATGGCCGCCACCAACGAGCTCAGGGAAAGCTGGTCGTCAACACTCCAAAGCCTCGTCTCTGACCCGACCACCGGAGAACTTCGTATACACCTTCGCCGGCAATCTGGCAAAGCTAGGGTACCTCCGACCACCACCGTTTCGACCCCAGACGTGGTCGATGATTCTGTTTCCGCATTCTGGGACTACCAGTTCCTCTTCGTCTCTCAACGCTCAGAAACAACCGAACCAGGTGACACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.29

Weight (kDa)

10.18

Isoelectric Point (pI)

68.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 234
AciI CCGC 2 cut(s) 155, 320
AcoI YGGCCR 1 cut(s) 152
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 3 cut(s) 220, 300, 326
AjiI CACGTC 1 cut(s) 300
AjnI CCWGG 1 cut(s) 375
AloI GAACNNNNNNTCC 2 cut(s) 322, 354
AluBI AGCT 3 cut(s) 168, 179, 262
AluI AGCT 3 cut(s) 168, 179, 262
Alw21I GWGCWC 2 cut(s) 44, 170
Alw26I GTCTC 3 cut(s) 11, 210, 354
Alw44I GTGCAC 1 cut(s) 40
AoxI GGCC 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 40
Asp718I GGTACC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 170
Bbv12I GWGCWC 2 cut(s) 44, 170
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 377
BcoDI GTCTC 3 cut(s) 11, 210, 354
BfaI CTAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 377
BmgBI CACGTC 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 377
BmrI ACTGGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 300, 326
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 95, 336
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 377
BseCI ATCGAT 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 3 cut(s) 220, 300, 326
BseMII CTCAG 2 cut(s) 183, 374
BseNI ACTGG 2 cut(s) 95, 336
BseSI GKGCMC 1 cut(s) 44
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 267
BshVI ATCGAT 1 cut(s) 142
BsiHKAI GWGCWC 2 cut(s) 44, 170
BsiSI CCGG 2 cut(s) 221, 246
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 3 cut(s) 220, 300, 326
BsmAI GTCTC 3 cut(s) 11, 210, 354
BsmBI CGTCTC 2 cut(s) 210, 354
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 44, 170
Bsp143I GATC 2 cut(s) 133, 143
BspACI CCGC 2 cut(s) 155, 320
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 2 cut(s) 182, 373
BspDI ATCGAT 1 cut(s) 142
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 2 cut(s) 95, 336
BssAI RCCGGY 1 cut(s) 245
BssMI GATC 2 cut(s) 133, 143
BssNAI GTATAC 1 cut(s) 235
Bst1107I GTATAC 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 2 cut(s) 169, 360
BstKTI GATC 2 cut(s) 136, 146
BstMAI GTCTC 3 cut(s) 11, 210, 354
BstMBI GATC 2 cut(s) 133, 143
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSLI GKGCMC 1 cut(s) 44
BstZ17I GTATAC 1 cut(s) 235
Bsu15I ATCGAT 1 cut(s) 142
BsuRI GGCC 1 cut(s) 154
BsuTUI ATCGAT 1 cut(s) 142
BtrI CACGTC 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 247
CciI TCATGA 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 245
ClaI ATCGAT 1 cut(s) 142
CsiI ACCWGGT 1 cut(s) 375
Csp6I GTAC 1 cut(s) 268
CviAII CATG 3 cut(s) 35, 67, 150
CviJI RGCY 5 cut(s) 154, 168, 179, 200, 262
CviKI_1 RGCY 5 cut(s) 154, 168, 179, 200, 262
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 2 cut(s) 169, 360
DpnI GATC 2 cut(s) 135, 145
DpnII GATC 2 cut(s) 133, 143
EaeI YGGCCR 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Ecl136II GAGCTC 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 170
Esp3I CGTCTC 2 cut(s) 210, 354
FaeI CATG 3 cut(s) 38, 70, 153
FaiI YATR 4 cut(s) 36, 68, 151, 235
FaqI GGGAC 1 cut(s) 343
FatI CATG 3 cut(s) 34, 66, 149
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 1 cut(s) 263
GluI GCNGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 154
HapII CCGG 2 cut(s) 221, 246
Hin1II CATG 3 cut(s) 38, 70, 153
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HinfI GANTC 2 cut(s) 31, 310
HpaII CCGG 2 cut(s) 221, 246
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 5 cut(s) 42, 82, 100, 188, 235
Hpy188I TCNGA 5 cut(s) 130, 210, 275, 363, 389
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 5 cut(s) 42, 82, 100, 188, 235
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 2 cut(s) 42, 115
HpyF3I CTNAG 2 cut(s) 169, 360
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 3 cut(s) 38, 70, 153
KpnI GGTACC 1 cut(s) 271
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Kzo9I GATC 2 cut(s) 133, 143
LweI GCATC 1 cut(s) 60
MabI ACCWGGT 1 cut(s) 375
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 379
MalI GATC 2 cut(s) 135, 145
MboI GATC 2 cut(s) 133, 143
MboII GAAGA 2 cut(s) 143, 336
MhlI GDGCHC 2 cut(s) 44, 170
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 4 cut(s) 120, 211, 281, 352
MroNI GCCGGC 1 cut(s) 245
MseI TTAA 1 cut(s) 17
MspI CCGG 2 cut(s) 221, 246
MspR9I CCNGG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 377
NaeI GCCGGC 1 cut(s) 247
NdeII GATC 2 cut(s) 133, 143
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 3 cut(s) 38, 70, 153
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 379
PagI TCATGA 1 cut(s) 34
PctI GAATGC 1 cut(s) 322
PdiI GCCGGC 1 cut(s) 247
PfeI GAWTC 2 cut(s) 31, 310
PflFI GACNNNGTC 1 cut(s) 301
PkrI GCNGC 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 269
PsrI GAACNNNNNNTAC 2 cut(s) 218, 250
PsyI GACNNNGTC 1 cut(s) 301
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SacI GAGCTC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 2 cut(s) 133, 143
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 2 cut(s) 44, 170
SetI ASST 8 cut(s) 112, 170, 181, 242, 264, 273, 302, 381
SexAI ACCWGGT 1 cut(s) 375
SfaNI GCATC 1 cut(s) 60
SsiI CCGC 2 cut(s) 155, 320
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 285
TaiI ACGT 1 cut(s) 302
TaqI TCGA 3 cut(s) 142, 289, 305
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 31, 310
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 379
TspRI CASTG 1 cut(s) 102
Tth111I GACNNNGTC 1 cut(s) 301
VneI GTGCAC 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.