Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Reverse (-)

26049499 .. 26140763

Gene Structure 91265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028678

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1863 bp

ATGCAAACCAACCCCTTCCAAATCATAGTTCCAAAACCAATATTCCCCTCACTGATAAATCTACCGGCGGTGCACCGCCCTCATCCGTCGACGCCACTGCTTAAACCTCCACGTGCCATCTCCATTTCCACACCCAACGGAAGTACCACTCCGACCACCACCGTTTCGACCCCAGACGTGGTCGATGACTCCGTTGCCGCATTCTGGGACTACCAGTTCCTCTTCGTCTCGCAACGCTCCGAAACAACCGAACCGGTGACACTCCGAGTGGTTGAAGGTTCAGTCCCGCCGGAGTTTCCTTCCGGAACTTACTACTTGACGGGACCGGGGCTCTTCAGCGACGACCATGGCTCCACTGTGCACCCTTTGGACGGTCACGGCTACCTCAGAGCTTTTAGGTTCGATGGGATTAATGGGGACGAGGTGAACGTCAAGTTCATGGCCAAGTACGTGAAGACTGAGGCGCAGGTGGAAGAGCACGATCCGGTGACCGGAGCGTGGCGGTTCACGCACAGGGGACCTTTTTCGGTGTTGAAGGGAGGACAGAAAGTTGGGAACACTAAGGTGATGAAGAATGTGGCGAATACTAGTGTGTTGAGCTGGGGCGGGAGGCTGTTGTGCTTGTGGGAAGGTGGCGACCCGTATGAGATTGAACCGGAGACTTTGGCTACTGTTGGGAAGGTCAGGCTGATGGAGGGTTGTGATCCGGTGGTGGAGAGTGGTGGCGGTGGCGGTGGCGTATGGGATGTTGCTGCGAGGTTGCTGAGGCCGATTTTGTACGGAGTGTTTAAAATGCCACCTAAGCGACTATTGTCTCATTACAAACTGGACACTAGCAGAAATAGGCTTCTTATGATGTCGTGCAATGCAGAAGATATGCTTCTGCCACTCAGTCATTTTACATTTTATGAATTTGACTCAAGTTTTAAGGAGGTGGCAAAGCAAGAGTTTACCATCCCAGATCACTTGATGATCCATGACTGGGCTTTCACTGACACTCATTATATCTTATTTGCTAATCGCATCAAGCTTGATTTTGTCGGTGCAATGACCGCAGTCTGTGGGACTACTGCGATGATAACAGCATTATCAGTAAACCCTAGCAAGGACACTTCTCCCATATACTTGCTTCCTCGCTTTCCCGATGAAGTGAATTATAATCGAGATTGGAGAGTGCCTGTTGAAGCTCCTTCACAATTTTGGCTGCTACATGTATGCAATGCCTTTGAGAATTTGGATGAGAATGGGAATTCGGAGATCCAAATACACGGTTCTGCTTGCTCTTACGAGTGGTTCAATTTCCAAAAGTTATTTGGATATGATTGGCAAAGTGGTAAACTAGACCCTTCGGTTATGAACATAAATGGAAGCCAAAGCAAGACATTGCCTCACCTTGTTCAGGTTTCCATCAACTTGGGTGCCAATGGGAACTGTCAAAGATGTGATGCGAAGCCTTTGAACGAGTGGAACAAGTCATCAGATTTTCCAGTGATCAATCCAGCATTTTCTGGCAGCAAAAACAAATACATATATGCAGCAGCTTCTTCGGGTTCTCGCAGTGCATTGCCAAGCTTTCCATTTGACATGGTGGTGAAGCTCAATGCTTCAACTAAATCTGTGCATACATGGTCTGTTGGTAGAAGAAGATTTATCGGCGAACCCACTTTCATCGCCAAAGGTTCTGAAGAAGATGAAGGTTACATTCTTGTAGTCGAGTATGCAGCTGTAGTTCAAAGGTGCTATCTGGTTATCTTGGATTCAAAAAAGATTGGAGCGGCTGACGCACTTGTGGCAAGACTTGAAGTCCCTAAGGACCTAAATTTTCCTTTTGGTTTTCATGGATGCTGGGCCAACAACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

621

Amino Acids

68.86

Weight (kDa)

6.04

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	76 - 617	4.1e-91	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1158
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	1418
AccBSI	CCGCTC	1 cut(s)	1775
AccI	GTMKAC	1 cut(s)	89
AccIII	TCCGGA	1 cut(s)	302
AclWI	GGATC	4 cut(s)	476, 698, 967, 1252
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	4 cut(s)	911, 1231, 1249, 1819
AcuI	CTGAAG	2 cut(s)	319, 1704
AcvI	CACGTG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	3 cut(s)	145, 449, 779
AfiI	CCNNNNNNNGG	8 cut(s)	178, 204, 371, 491, 498, 982, 1105, 1399
AflIII	ACRYGT	1 cut(s)	1210
AgeI	ACCGGT	1 cut(s)	253
AhdI	GACNNNNNGTC	1 cut(s)	1802
AhlI	ACTAGT	1 cut(s)	587
AjiI	CACGTC	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	563
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	8 cut(s)	392, 600, 1030, 1187, 1541, 1572, 1597, 1724
AluI	AGCT	8 cut(s)	392, 600, 1030, 1187, 1541, 1572, 1597, 1724
Alw21I	GWGCWC	3 cut(s)	75, 363, 480
Alw26I	GTCTC	3 cut(s)	232, 653, 819
Alw44I	GTGCAC	2 cut(s)	71, 359
AlwI	GGATC	4 cut(s)	476, 698, 967, 1252
Aor13HI	TCCGGA	1 cut(s)	302
AoxI	GGCC	3 cut(s)	441, 767, 1848
ApaLI	GTGCAC	2 cut(s)	71, 359
ApeKI	GCWGC	6 cut(s)	752, 1204, 1512, 1535, 1538, 1721
ApoI	RAATTY	4 cut(s)	911, 1231, 1249, 1819
AseI	ATTAAT	1 cut(s)	411
AsiGI	ACCGGT	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	4 cut(s)	323, 518, 1813, 1848
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	6 cut(s)	268, 436, 499, 577, 1382, 1603
AvaII	GGWCC	3 cut(s)	323, 518, 1813
AxyI	CCTNAGG	1 cut(s)	1809
BaeGI	GKGCMC	2 cut(s)	75, 363
BaeI	ACNNNNGTAYC	2 cut(s)	127, 160
BalI	TGGCCA	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	1418
BanII	GRGCYC	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	3 cut(s)	75, 363, 480
BbvCI	CCTCAGC	1 cut(s)	764
BbvI	GCAGC	6 cut(s)	739, 1191, 1524, 1547, 1550, 1733
BccI	CCATC	5 cut(s)	125, 398, 685, 962, 1415
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	4 cut(s)	79, 113, 1527, 1561
BclI	TGATCA	1 cut(s)	1491
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	232, 653, 819
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	4 cut(s)	588, 834, 1101, 1340
BfmI	CTRYAG	1 cut(s)	1725
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	8 cut(s)	198, 753, 1205, 1513, 1536, 1539, 1722, 1776
BlsI	GCNGC	8 cut(s)	199, 754, 1206, 1514, 1537, 1540, 1723, 1777
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	3 cut(s)	323, 518, 1813
BmeRI	GACNNNNNGTC	1 cut(s)	1802
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	4 cut(s)	323, 518, 1813, 1848
BmiI	GGNNCC	4 cut(s)	324, 352, 519, 1420
BmrFI	CCNGG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	991
BmsI	GCATC	3 cut(s)	1032, 1435, 1832
BmuI	ACTGGG	1 cut(s)	991
BoxI	GACNNNNGTC	2 cut(s)	811, 1055
BpiI	GAAGAC	1 cut(s)	461
Bpu10I	CCTNAGC	2 cut(s)	764, 801
BpuEI	CTTGAG	1 cut(s)	904
BpuMI	CCSGG	1 cut(s)	327
BsaAI	YACGTR	2 cut(s)	113, 451
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	326, 346
BsaWI	WCCGGW	6 cut(s)	253, 302, 484, 491, 655, 706
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	8 cut(s)	178, 204, 371, 491, 498, 982, 1105, 1399
Bse118I	RCCGGY	2 cut(s)	64, 253
Bse1I	ACTGG	4 cut(s)	214, 831, 986, 1487
Bse21I	CCTNAGG	1 cut(s)	1809
Bse3DI	GCAATG	5 cut(s)	871, 1053, 1225, 1382, 1562
BseAI	TCCGGA	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	326, 346
BseGI	GGATG	5 cut(s)	82, 751, 954, 1243, 1847
BseLI	CCNNNNNNNGG	8 cut(s)	178, 204, 371, 491, 498, 982, 1105, 1399
BseMI	GCAATG	5 cut(s)	871, 1053, 1225, 1382, 1562
BseMII	CTCAG	4 cut(s)	400, 450, 755, 904
BseNI	ACTGG	4 cut(s)	214, 831, 986, 1487
BseSI	GKGCMC	2 cut(s)	75, 363
BseXI	GCAGC	6 cut(s)	739, 1191, 1524, 1547, 1550, 1733
BseYI	CCCAGC	2 cut(s)	600, 1845
BshFI	GGCC	3 cut(s)	443, 769, 1850
BshNI	GGYRCC	1 cut(s)	1418
BshTI	ACCGGT	1 cut(s)	253
BsiHKAI	GWGCWC	3 cut(s)	75, 363, 480
BsiSI	CCGG	9 cut(s)	65, 254, 290, 303, 326, 485, 492, 656, 707
BslFI	GGGAC	7 cut(s)	221, 269, 336, 431, 531, 1078, 1790
BslI	CCNNNNNNNGG	8 cut(s)	178, 204, 371, 491, 498, 982, 1105, 1399
BsmAI	GTCTC	3 cut(s)	232, 653, 819
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	7 cut(s)	221, 269, 336, 431, 531, 1078, 1790
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	3 cut(s)	443, 769, 1850
Bsp1286I	GDGCHC	4 cut(s)	75, 333, 363, 480
Bsp13I	TCCGGA	1 cut(s)	302
Bsp143I	GATC	6 cut(s)	481, 703, 961, 972, 1257, 1491
Bsp19I	CCATGG	1 cut(s)	346
BspANI	GGCC	3 cut(s)	443, 769, 1850
BspCNI	CTCAG	4 cut(s)	399, 451, 756, 903
BspEI	TCCGGA	1 cut(s)	302
BspLI	GGNNCC	4 cut(s)	324, 352, 519, 1420
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	4 cut(s)	476, 698, 967, 1252
BspQI	GCTCTTC	2 cut(s)	338, 468
BspT107I	GGYRCC	1 cut(s)	1418
BsrBI	CCGCTC	1 cut(s)	1775
BsrDI	GCAATG	5 cut(s)	871, 1053, 1225, 1382, 1562
BsrFI	RCCGGY	2 cut(s)	64, 253
BsrI	ACTGG	4 cut(s)	214, 831, 986, 1487
BssAI	RCCGGY	2 cut(s)	64, 253
BssECI	CCNNGG	2 cut(s)	326, 346
BssMI	GATC	6 cut(s)	481, 703, 961, 972, 1257, 1491
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	6 cut(s)	163, 358, 374, 673, 1271, 1433
Bst6I	CTCTTC	3 cut(s)	227, 338, 468
BstACI	GRCGYC	1 cut(s)	92
BstBAI	YACGTR	2 cut(s)	113, 451
BstC8I	GCNNGC	1 cut(s)	1279
BstDEI	CTNAG	7 cut(s)	386, 459, 561, 764, 801, 890, 1809
BstDSI	CCRYGG	1 cut(s)	346
BstEII	GGTNACC	1 cut(s)	487
BstENI	CCTNNNNNAGG	1 cut(s)	1397
BstF5I	GGATG	5 cut(s)	82, 751, 954, 1243, 1847
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	6 cut(s)	484, 706, 964, 975, 1260, 1494
BstMAI	GTCTC	3 cut(s)	232, 653, 819
BstMBI	GATC	6 cut(s)	481, 703, 961, 972, 1257, 1491
BstMWI	GCNNNNNNNGC	5 cut(s)	508, 802, 1052, 1781, 1790
BstNSI	RCATGY	1 cut(s)	1214
BstPAI	GACNNNNGTC	2 cut(s)	811, 1055
BstPI	GGTNACC	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	1725
BstSLI	GKGCMC	2 cut(s)	75, 363
BstV1I	GCAGC	6 cut(s)	739, 1191, 1524, 1547, 1550, 1733
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	1257
BstXI	CCANNNNNNTGG	1 cut(s)	1414
BstYI	RGATCY	1 cut(s)	1257
Bsu36I	CCTNAGG	1 cut(s)	1809
BsuRI	GGCC	3 cut(s)	443, 769, 1850
BtgI	CCRYGG	1 cut(s)	346
BtgZI	GCGATG	2 cut(s)	1088, 1654
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	5 cut(s)	82, 751, 954, 1243, 1847
BtsI	GCAGTG	2 cut(s)	95, 1564
BtsIMutI	CAGTG	6 cut(s)	50, 95, 354, 990, 1494, 1564
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	1279
CfoI	GCGC	1 cut(s)	466
Cfr10I	RCCGGY	2 cut(s)	64, 253
Cfr13I	GGNCC	4 cut(s)	323, 518, 1813, 1848
CseI	GACGC	2 cut(s)	100, 1790
Csp6I	GTAC	3 cut(s)	144, 448, 778
CspAI	ACCGGT	1 cut(s)	253
CviAII	CATG	7 cut(s)	347, 439, 977, 1211, 1585, 1626, 1838
CviQI	GTAC	3 cut(s)	144, 448, 778
DdeI	CTNAG	7 cut(s)	386, 459, 561, 764, 801, 890, 1809
DpnI	GATC	6 cut(s)	483, 705, 963, 974, 1259, 1493
DpnII	GATC	6 cut(s)	481, 703, 961, 972, 1257, 1491
DraI	TTTAAA	1 cut(s)	790
DriI	GACNNNNNGTC	1 cut(s)	1802
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	3 cut(s)	227, 338, 468
Eam1105I	GACNNNNNGTC	1 cut(s)	1802
EarI	CTCTTC	3 cut(s)	227, 338, 468
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	3 cut(s)	323, 518, 1813
Eco57I	CTGAAG	2 cut(s)	319, 1704
Eco72I	CACGTG	1 cut(s)	113
Eco81I	CCTNAGG	1 cut(s)	1809
Eco91I	GGTNACC	1 cut(s)	487
EcoNI	CCTNNNNNAGG	1 cut(s)	1397
EcoO109I	RGGNCCY	2 cut(s)	518, 1813
EcoO65I	GGTNACC	1 cut(s)	487
EcoRI	GAATTC	1 cut(s)	1249
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	7 cut(s)	350, 442, 980, 1214, 1588, 1629, 1841
FalI	AAGNNNNNCTT	2 cut(s)	864, 896
FaqI	GGGAC	7 cut(s)	221, 269, 336, 431, 531, 1078, 1790
FatI	CATG	7 cut(s)	346, 438, 976, 1210, 1584, 1625, 1837
FauI	CCCGC	2 cut(s)	294, 599
FbaI	TGATCA	1 cut(s)	1491
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	8 cut(s)	198, 753, 1205, 1513, 1536, 1539, 1722, 1776
FokI	GGATG	5 cut(s)	69, 758, 941, 1250, 1854
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	8 cut(s)	198, 753, 1205, 1513, 1536, 1539, 1722, 1776
FspBI	CTAG	4 cut(s)	588, 834, 1101, 1340
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	8 cut(s)	198, 753, 1205, 1513, 1536, 1539, 1722, 1776
GsaI	CCCAGC	2 cut(s)	604, 1849
HaeIII	GGCC	3 cut(s)	443, 769, 1850
HapII	CCGG	9 cut(s)	65, 254, 290, 303, 326, 485, 492, 656, 707
HgaI	GACGC	2 cut(s)	100, 1790
HhaI	GCGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	7 cut(s)	350, 442, 980, 1214, 1588, 1629, 1841
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	2 cut(s)	1028, 1570
HinfI	GANTC	3 cut(s)	188, 917, 1757
HpaII	CCGG	9 cut(s)	65, 254, 290, 303, 326, 485, 492, 656, 707
HphI	GGTGA	6 cut(s)	268, 436, 499, 577, 1382, 1603
Hpy166II	GTNNAC	8 cut(s)	73, 90, 361, 427, 507, 951, 1096, 1337
Hpy188I	TCNGA	7 cut(s)	153, 241, 266, 389, 1255, 1480, 1684
Hpy188III	TCNNGA	3 cut(s)	303, 1142, 1163
Hpy8I	GTNNAC	8 cut(s)	73, 90, 361, 427, 507, 951, 1096, 1337
Hpy99I	CGWCG	3 cut(s)	91, 94, 344
HpyAV	CCTTC	9 cut(s)	25, 269, 309, 529, 623, 673, 1200, 1356, 1688
HpyCH4III	ACNGT	6 cut(s)	163, 358, 374, 673, 1271, 1433
HpyCH4IV	ACGT	4 cut(s)	112, 177, 429, 450
HpyF10VI	GCNNNNNNNGC	5 cut(s)	508, 802, 1052, 1781, 1790
HpyF3I	CTNAG	7 cut(s)	386, 459, 561, 764, 801, 890, 1809
HpySE526I	ACGT	4 cut(s)	112, 177, 429, 450
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	7 cut(s)	350, 442, 980, 1214, 1588, 1629, 1841
HspAI	GCGC	1 cut(s)	464
Kpn2I	TCCGGA	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	1491
Kzo9I	GATC	6 cut(s)	481, 703, 961, 972, 1257, 1491
LguI	GCTCTTC	2 cut(s)	338, 468
LmnI	GCTCC	5 cut(s)	242, 356, 494, 1192, 1772
Lsp1109I	GCAGC	6 cut(s)	739, 1191, 1524, 1547, 1550, 1733
LweI	GCATC	3 cut(s)	1032, 1435, 1832
MaeI	CTAG	4 cut(s)	588, 834, 1101, 1340
MaeII	ACGT	4 cut(s)	112, 177, 429, 450
MaeIII	GTNAC	4 cut(s)	256, 374, 487, 1697
MalI	GATC	6 cut(s)	483, 705, 963, 974, 1259, 1493
MbiI	CCGCTC	1 cut(s)	1775
MboI	GATC	6 cut(s)	481, 703, 961, 972, 1257, 1491
MflI	RGATCY	1 cut(s)	1257
MhlI	GDGCHC	4 cut(s)	75, 333, 363, 480
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	7 cut(s)	911, 1153, 1196, 1231, 1249, 1297, 1819
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	2 cut(s)	182, 911
MmeI	TCCRAC	1 cut(s)	176
Mox20I	TGGCCA	1 cut(s)	443
MroI	TCCGGA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	4 cut(s)	102, 411, 789, 927
MslI	CAYNNNNRTG	2 cut(s)	563, 1589
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	1724
MspI	CCGG	9 cut(s)	65, 254, 290, 303, 326, 485, 492, 656, 707
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	200
MwoI	GCNNNNNNNGC	5 cut(s)	508, 802, 1052, 1781, 1790
NciI	CCSGG	1 cut(s)	327
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	6 cut(s)	481, 703, 961, 972, 1257, 1491
NlaIII	CATG	7 cut(s)	350, 442, 980, 1214, 1588, 1629, 1841
NlaIV	GGNNCC	4 cut(s)	324, 352, 519, 1420
NmuCI	GTSAC	3 cut(s)	256, 374, 487
NspI	RCATGY	1 cut(s)	1214
OliI	CACNNNNGTG	1 cut(s)	563
PaqCI	CACCTGC	1 cut(s)	457
PciI	ACATGT	1 cut(s)	1210
PciSI	GCTCTTC	2 cut(s)	338, 468
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 426
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	1757
PflFI	GACNNNGTC	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	253
PkrI	GCNGC	8 cut(s)	199, 754, 1206, 1514, 1537, 1540, 1723, 1777
PleI	GAGTC	2 cut(s)	182, 911
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
PpsI	GAGTC	2 cut(s)	182, 911
Ppu21I	YACGTR	2 cut(s)	113, 451
PpuMI	RGGWCCY	2 cut(s)	518, 1813
PscI	ACATGT	1 cut(s)	1210
PshAI	GACNNNNGTC	2 cut(s)	811, 1055
PshBI	ATTAAT	1 cut(s)	411
PsiI	TTATAA	1 cut(s)	1158
Psp5II	RGGWCCY	2 cut(s)	518, 1813
PspCI	CACGTG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	487
PspFI	CCCAGC	2 cut(s)	600, 1845
PspN4I	GGNNCC	4 cut(s)	324, 352, 519, 1420
PspPI	GGNCC	4 cut(s)	323, 518, 1813, 1848
PspPPI	RGGWCCY	2 cut(s)	518, 1813
PsuI	RGATCY	1 cut(s)	1257
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	1724
RsaI	GTAC	3 cut(s)	145, 449, 779
RsaNI	GTAC	3 cut(s)	144, 448, 778
RseI	CAYNNNNRTG	2 cut(s)	563, 1589
SalI	GTCGAC	1 cut(s)	88
SapI	GCTCTTC	2 cut(s)	338, 468
SaqAI	TTAA	4 cut(s)	102, 411, 789, 927
SatI	GCNGC	8 cut(s)	198, 753, 1205, 1513, 1536, 1539, 1722, 1776
Sau3AI	GATC	6 cut(s)	481, 703, 961, 972, 1257, 1491
Sau96I	GGNCC	4 cut(s)	323, 518, 1813, 1848
SchI	GAGTC	2 cut(s)	182, 911
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	4 cut(s)	75, 333, 363, 480
SfaNI	GCATC	3 cut(s)	1032, 1435, 1832
SfcI	CTRYAG	1 cut(s)	1725
SgrDI	CGTCGACG	1 cut(s)	88
SinI	GGWCC	3 cut(s)	323, 518, 1813
SmiMI	CAYNNNNRTG	2 cut(s)	563, 1589
SmlI	CTYRAG	1 cut(s)	919
SmoI	CTYRAG	1 cut(s)	919
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	7 cut(s)	911, 1153, 1196, 1231, 1249, 1297, 1819
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	4 cut(s)	588, 834, 1101, 1340
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	6 cut(s)	163, 358, 374, 673, 1271, 1433
TaiI	ACGT	4 cut(s)	115, 180, 432, 453
TaqI	TCGA	6 cut(s)	89, 167, 183, 402, 1162, 1713
TasI	AATT	7 cut(s)	911, 1153, 1196, 1231, 1249, 1297, 1819
TauI	GCSGC	2 cut(s)	200, 1778
TfiI	GAWTC	1 cut(s)	1757
Tru1I	TTAA	4 cut(s)	102, 411, 789, 927
Tru9I	TTAA	4 cut(s)	102, 411, 789, 927
TscAI	CASTG	6 cut(s)	57, 102, 361, 997, 1494, 1564
TseFI	GTSAC	3 cut(s)	256, 374, 487
TseI	GCWGC	6 cut(s)	752, 1204, 1512, 1535, 1538, 1721
Tsp45I	GTSAC	3 cut(s)	256, 374, 487
TspDTI	ATGAA	8 cut(s)	427, 584, 924, 1161, 1370, 1657, 1707, 1826
TspGWI	ACGGA	4 cut(s)	75, 153, 181, 795
TspRI	CASTG	6 cut(s)	57, 102, 361, 997, 1494, 1564
Tth111I	GACNNNGTC	1 cut(s)	179
VneI	GTGCAC	2 cut(s)	71, 359
VpaK11BI	GGWCC	3 cut(s)	323, 518, 1813
VspI	ATTAAT	1 cut(s)	411
XagI	CCTNNNNNAGG	1 cut(s)	1397
XapI	RAATTY	4 cut(s)	911, 1231, 1249, 1819
XceI	RCATGY	1 cut(s)	1214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1310
XmiI	GTMKAC	1 cut(s)	89
XspI	CTAG	4 cut(s)	588, 834, 1101, 1340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.