Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002209.1

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

61260 .. 62248

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002209.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgctttctgttcactttctgttcccagtgaactcaccacctctgcaactcaaaccatcagaagatcattatcgatcatcatggccgccaccaacgagctcagggaaagctggtcgtcgacactccaaagcctcgtctctgactcgaccaccggagaacttcgtatacaccttcgccggcaatctgggcttctgcaaagctagggtacctccggccaccaccgtttcgaccccagacgtgttcgatgattctgtttctgcattctgggactaccatgacgatcatggctctgctttgcaccttctggacggtcacggctacgtcagggcttgttggttcgatgagaataatggggacgaagtgaaggtcaagttcttggccaagtacgtgaggactgaggcgcaggtggaagaacacgatacggttgccggagcgtggcgtttcacgaactgggggaggctgttgtgcttgtgggaagatggcgacccgtatgagattgaaacggagactttgactactgtctggaaggtcaagctgccactcattttgggtgatcaatggtttgacttggcggacgatggtgaatcgttgatttgggctgttaagaagacgcagcgggatttgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

209

Amino Acids

23.78

Weight (kDa)

5.44

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
Acc65I	GGTACC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	205
AccI	GTMKAC	2 cut(s)	118, 165
AciI	CCGC	3 cut(s)	86, 572, 616
AcoI	YGGCCR	3 cut(s)	83, 213, 378
AfaI	GTAC	2 cut(s)	207, 386
AfiI	CCNNNNNNNGG	1 cut(s)	435
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	500
AjiI	CACGTC	1 cut(s)	238
AluBI	AGCT	4 cut(s)	99, 110, 200, 535
AluI	AGCT	4 cut(s)	99, 110, 200, 535
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	2 cut(s)	141, 500
AoxI	GGCC	3 cut(s)	83, 213, 378
ApeKI	GCWGC	2 cut(s)	535, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	351, 383
Asp718I	GGTACC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	27, 563, 593
BalI	TGGCCA	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	522, 625
BccI	CCATC	3 cut(s)	64, 473, 572
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	141, 500
BfaI	CTAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	3 cut(s)	86, 536, 614
BlsI	GCNGC	3 cut(s)	87, 537, 615
BmgBI	CACGTC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	207
BmrI	ACTGGG	2 cut(s)	20, 460
BmuI	ACTGGG	2 cut(s)	20, 460
BoxI	GACNNNNGTC	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	614
Bpu10I	CCTNAGC	1 cut(s)	100
Bsa29I	ATCGAT	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	388
BsaBI	GATNNNNATC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	26, 455
Bse8I	GATNNNNATC	1 cut(s)	69
BseCI	ATCGAT	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	114, 387
BseNI	ACTGG	2 cut(s)	26, 455
BseXI	GCAGC	2 cut(s)	522, 625
BshFI	GGCC	3 cut(s)	85, 215, 380
BshNI	GGYRCC	1 cut(s)	205
BshVI	ATCGAT	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	4 cut(s)	152, 177, 212, 429
BslFI	GGGAC	2 cut(s)	281, 368
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	2 cut(s)	141, 500
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	2 cut(s)	281, 368
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	3 cut(s)	85, 215, 380
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	64, 74, 280, 553
BspACI	CCGC	3 cut(s)	86, 572, 616
BspANI	GGCC	3 cut(s)	85, 215, 380
BspCNI	CTCAG	2 cut(s)	113, 388
BspDI	ATCGAT	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	26, 455
BssAI	RCCGGY	1 cut(s)	176
BssMI	GATC	4 cut(s)	64, 74, 280, 553
BssNAI	GTATAC	1 cut(s)	166
Bst1107I	GTATAC	1 cut(s)	166
Bst4CI	ACNGT	4 cut(s)	223, 311, 424, 520
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	100, 396
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	4 cut(s)	67, 77, 283, 556
BstMAI	GTCTC	2 cut(s)	141, 500
BstMBI	GATC	4 cut(s)	64, 74, 280, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstPAI	GACNNNNGTC	1 cut(s)	518
BstV1I	GCAGC	2 cut(s)	522, 625
BstV2I	GAAGAC	1 cut(s)	614
BstZ17I	GTATAC	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	73
BsuRI	GGCC	3 cut(s)	85, 215, 380
BsuTUI	ATCGAT	1 cut(s)	73
BtrI	CACGTC	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	178
CfoI	GCGC	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	176
ClaI	ATCGAT	1 cut(s)	73
CseI	GACGC	1 cut(s)	619
Csp6I	GTAC	2 cut(s)	206, 385
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	3 cut(s)	81, 275, 284
CviQI	GTAC	2 cut(s)	206, 385
DdeI	CTNAG	2 cut(s)	100, 396
DpnI	GATC	4 cut(s)	66, 76, 282, 555
DpnII	GATC	4 cut(s)	64, 74, 280, 553
EaeI	YGGCCR	3 cut(s)	83, 213, 378
EciI	GGCGGA	1 cut(s)	587
Ecl136II	GAGCTC	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	3 cut(s)	84, 278, 287
FaiI	YATR	5 cut(s)	82, 166, 276, 285, 492
FaqI	GGGAC	2 cut(s)	281, 368
FatI	CATG	3 cut(s)	80, 274, 283
FauI	CCCGC	1 cut(s)	609
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	2 cut(s)	118, 165
Fnu4HI	GCNGC	3 cut(s)	86, 536, 614
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	86, 536, 614
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	3 cut(s)	86, 536, 614
HaeIII	GGCC	3 cut(s)	85, 215, 380
HapII	CCGG	4 cut(s)	152, 177, 212, 429
HgaI	GACGC	1 cut(s)	619
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	3 cut(s)	84, 278, 287
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HinfI	GANTC	3 cut(s)	142, 248, 584
HpaII	CCGG	4 cut(s)	152, 177, 212, 429
HphI	GGTGA	3 cut(s)	27, 563, 593
Hpy166II	GTNNAC	4 cut(s)	13, 31, 119, 166
Hpy188I	TCNGA	2 cut(s)	61, 141
Hpy188III	TCNNGA	3 cut(s)	305, 445, 523
Hpy8I	GTNNAC	4 cut(s)	13, 31, 119, 166
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	4 cut(s)	181, 311, 358, 520
HpyCH4III	ACNGT	4 cut(s)	223, 311, 424, 520
HpyCH4IV	ACGT	3 cut(s)	237, 321, 387
HpyCH4V	TGCA	4 cut(s)	46, 195, 260, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	2 cut(s)	100, 396
HpySE526I	ACGT	3 cut(s)	237, 321, 387
Hsp92II	CATG	3 cut(s)	84, 278, 287
HspAI	GCGC	1 cut(s)	401
KpnI	GGTACC	1 cut(s)	209
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	64, 74, 280, 553
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	2 cut(s)	522, 625
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	3 cut(s)	237, 321, 387
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	4 cut(s)	66, 76, 282, 555
MboI	GATC	4 cut(s)	64, 74, 280, 553
MboII	GAAGA	4 cut(s)	74, 422, 488, 619
MhlI	GDGCHC	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	380
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	7 cut(s)	51, 142, 219, 384, 391, 450, 618
Mox20I	TGGCCA	1 cut(s)	380
MroNI	GCCGGC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	1 cut(s)	603
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	616
MspI	CCGG	4 cut(s)	152, 177, 212, 429
Mva1269I	GAATGC	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	186
NaeI	GCCGGC	1 cut(s)	178
NdeII	GATC	4 cut(s)	64, 74, 280, 553
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	3 cut(s)	84, 278, 287
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	394
PctI	GAATGC	1 cut(s)	260
PdiI	GCCGGC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	248, 584
PkrI	GCNGC	3 cut(s)	87, 537, 615
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	388
PshAI	GACNNNNGTC	1 cut(s)	518
Psp124BI	GAGCTC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	207
PsrI	GAACNNNNNNTAC	2 cut(s)	149, 181
RsaI	GTAC	2 cut(s)	207, 386
RsaNI	GTAC	2 cut(s)	206, 385
SacI	GAGCTC	1 cut(s)	101
SalI	GTCGAC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	3 cut(s)	86, 536, 614
Sau3AI	GATC	4 cut(s)	64, 74, 280, 553
SchI	GAGTC	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	101
SsiI	CCGC	3 cut(s)	86, 572, 616
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	101
TaaI	ACNGT	4 cut(s)	223, 311, 424, 520
TaiI	ACGT	3 cut(s)	240, 324, 390
TaqI	TCGA	6 cut(s)	73, 118, 145, 227, 243, 339
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	2 cut(s)	248, 584
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	2 cut(s)	535, 613
Tsp45I	GTSAC	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmiI	GTMKAC	2 cut(s)	118, 165
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.