Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

53474683 .. 53477668

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20603

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTTGGGTGATGTTGTTGTTTGGTGTGCTGGTCAAAAAGCAAAGGCCAACAAAGGTTTTCTTTTTCTTAAAGAAAATAGGAATCATGGTGCACTTCCTCTTGTCGTCCACTTCCAACTCATTTTCTATTCCCACTCCCACTCTCTCTTCCGTCTTTGTCTTCTTCAGTTCAGTCATCACCCTCATCTCTCTTTCTTCTTCTTCCAAAGCTGCTGCAATTGTAATTGCAATTCCACGATGCCACCACCACCACCACCAGTCGAAACCAGATTAAGACACCGCCCAAAACCAAGTCTGGGTGTCACCAAGCACGGCCTCCGGCCTTCGTACGCAGCACCTATGGCGGTGAAGCCACTGTTCCTTCCTTCTTTCCGATTCCCGGCTGCGATCTGCACCCACATCCACAGCTGCTTCACTCAACGGACAAATCTGGTGGCCTTCACCTCAAACCAGCATCGGTTGATCGCTGCAGGCGCCTCGTCGGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.28

Weight (kDa)

9.88

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	473
AciI	CCGC	2 cut(s)	280, 344
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	296, 379
AluBI	AGCT	2 cut(s)	210, 408
AluI	AGCT	2 cut(s)	210, 408
Alw21I	GWGCWC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	90
AoxI	GGCC	4 cut(s)	45, 313, 320, 435
ApaLI	GTGCAC	1 cut(s)	90
ApeKI	GCWGC	6 cut(s)	210, 213, 332, 383, 408, 467
AspLEI	GCGC	1 cut(s)	476
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	5 cut(s)	20, 170, 295, 358, 433
BaeGI	GKGCMC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	473
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	6 cut(s)	197, 200, 344, 370, 395, 454
BceAI	ACGGC	1 cut(s)	328
BcgI	CGANNNNNNTGC	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	380
BfmI	CTRYAG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	477
BisI	GCNGC	6 cut(s)	211, 214, 333, 384, 409, 468
BlsI	GCNGC	6 cut(s)	212, 215, 334, 385, 410, 469
Bme1390I	CCNGG	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	228, 463
BpiI	GAAGAC	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 379
Bse1I	ACTGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	296, 379
BseNI	ACTGG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	94
BseXI	GCAGC	6 cut(s)	197, 200, 344, 370, 395, 454
BsgI	GTGCAG	1 cut(s)	376
BshFI	GGCC	4 cut(s)	47, 315, 322, 437
BshNI	GGYRCC	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	319, 380
BsiWI	CGTACG	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	296, 379
BsnI	GGCC	4 cut(s)	47, 315, 322, 437
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	387, 462
BspACI	CCGC	2 cut(s)	280, 344
BspANI	GGCC	4 cut(s)	47, 315, 322, 437
BspLI	GGNNCC	1 cut(s)	475
BspMAI	CTGCAG	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	387, 462
BssNI	GRCGYC	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	2 cut(s)	390, 465
BstMBI	GATC	2 cut(s)	387, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 473
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	94
BstV1I	GCAGC	6 cut(s)	197, 200, 344, 370, 395, 454
BstV2I	GAAGAC	1 cut(s)	152
BsuRI	GGCC	4 cut(s)	47, 315, 322, 437
BtsCI	GGATG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	472
CfoI	GCGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	328
CspCI	CAANNNNNGTGG	2 cut(s)	414, 449
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	8 cut(s)	47, 210, 315, 322, 352, 383, 408, 437
CviKI_1	RGCY	8 cut(s)	47, 210, 315, 322, 352, 383, 408, 437
CviQI	GTAC	1 cut(s)	328
DinI	GGCGCC	1 cut(s)	475
DpnI	GATC	2 cut(s)	389, 464
DpnII	GATC	2 cut(s)	387, 462
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	149
EgeI	GGCGCC	1 cut(s)	475
EheI	GGCGCC	1 cut(s)	475
FaeI	CATG	1 cut(s)	89
FaiI	YATR	2 cut(s)	87, 341
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	6 cut(s)	211, 214, 333, 384, 409, 468
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	6 cut(s)	211, 214, 333, 384, 409, 468
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	6 cut(s)	211, 214, 333, 384, 409, 468
HaeII	RGCGCY	1 cut(s)	477
HaeIII	GGCC	4 cut(s)	47, 315, 322, 437
HapII	CCGG	2 cut(s)	319, 380
HhaI	GCGC	1 cut(s)	476
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HinfI	GANTC	2 cut(s)	82, 375
HpaII	CCGG	2 cut(s)	319, 380
HphI	GGTGA	5 cut(s)	20, 170, 295, 358, 433
Hpy166II	GTNNAC	2 cut(s)	92, 109
Hpy188I	TCNGA	2 cut(s)	374, 484
Hpy8I	GTNNAC	2 cut(s)	92, 109
Hpy99I	CGWCG	1 cut(s)	484
HpyAV	CCTTC	4 cut(s)	333, 371, 375, 448
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4V	TGCA	5 cut(s)	92, 216, 228, 393, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 473
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	474
KasI	GGCGCC	1 cut(s)	473
Kzo9I	GATC	2 cut(s)	387, 462
LpnPI	CCDG	9 cut(s)	15, 270, 280, 281, 332, 393, 416, 456, 464
Lsp1109I	GCAGC	6 cut(s)	197, 200, 344, 370, 395, 454
LweI	GCATC	2 cut(s)	228, 463
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	389, 464
MboI	GATC	2 cut(s)	387, 462
MboII	GAAGA	6 cut(s)	139, 152, 155, 187, 190, 193
MfeI	CAATTG	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	3 cut(s)	217, 223, 229
Mly113I	GGCGCC	1 cut(s)	474
MmeI	TCCRAC	2 cut(s)	139, 462
MnlI	CCTC	5 cut(s)	108, 192, 326, 454, 487
MseI	TTAA	2 cut(s)	69, 272
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	2 cut(s)	319, 380
MspR9I	CCNGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	341, 473
NarI	GGCGCC	1 cut(s)	474
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	2 cut(s)	387, 462
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	82, 375
Pfl23II	CGTACG	1 cut(s)	327
PkrI	GCNGC	6 cut(s)	212, 215, 334, 385, 410, 469
PluTI	GGCGCC	1 cut(s)	477
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	408
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	69, 272
SatI	GCNGC	6 cut(s)	211, 214, 333, 384, 409, 468
Sau3AI	GATC	2 cut(s)	387, 462
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	5 cut(s)	58, 212, 340, 410, 446
SfaNI	GCATC	2 cut(s)	228, 463
SfcI	CTRYAG	1 cut(s)	468
SfoI	GGCGCC	1 cut(s)	475
Sse9I	AATT	3 cut(s)	217, 223, 229
SsiI	CCGC	2 cut(s)	280, 344
SspDI	GGCGCC	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	261
TasI	AATT	3 cut(s)	217, 223, 229
TfiI	GAWTC	2 cut(s)	82, 375
Tru1I	TTAA	2 cut(s)	69, 272
Tru9I	TTAA	2 cut(s)	69, 272
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	6 cut(s)	210, 213, 332, 383, 408, 467
Tsp45I	GTSAC	1 cut(s)	301
TspGWI	ACGGA	2 cut(s)	140, 436
TspRI	CASTG	1 cut(s)	360
VneI	GTGCAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.