Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004502.1

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

49314 .. 52632

Gene Structure 3319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004502.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgaaaacgttagtcttccactttgaatcacatggtttgccaatttccagtagtactcattttcacatacaatttgactcaagttttaaggaggtggcaaagcaagagtgtaccatcccagatcacttgatgatccaggactgggctttcaccgacactcattatatcttatttgctaatcgcatcaagcttgatgttgtcggtgaaatgactgcagtctgtgggactacaccgatgataacagcattatcagtaaaccctagcaaggacacttctcccatatacttgcttcctcgctttcccgatgaagtgaattataatcgagattggacagtgcctattgaagctccctcacaattttggctgctacatgtatgcaatgcctatgagaatttggatgagaatgggaattcggagatcctaatacacggttctgcttgctcttacgagtggttcaatttccaaaagttatttgaaaatccagaaatggctccgccaaagaaaatcatcatcgatcaagaggaggaaatcaccggggaggctgcccatacctggggaactggcattggagctcgatgcttcgctcgcaccaccgtccagagacccttgctacttagtttcccaattctcaggccgggctgggtcctactccgcgagactctattccagaagacgccattgctctctacggcctgccgattcgccgtcccatcccagtcttccaaaggactccaggagatttcagtagttggggccagcgtcagtacaaagccaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

259

Amino Acids

29.2

Weight (kDa)

5.7

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccII	CGCG	1 cut(s)	654
AciI	CCGC	2 cut(s)	494, 652
AclI	AACGTT	1 cut(s)	8
AclWI	GGATC	2 cut(s)	127, 412
AcsI	RAATTY	2 cut(s)	391, 409
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	3 cut(s)	55, 112, 766
AfiI	CCNNNNNNNGG	4 cut(s)	142, 265, 552, 553
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	26, 344, 457, 476
AjnI	CCWGG	3 cut(s)	135, 551, 732
AluBI	AGCT	3 cut(s)	190, 347, 572
AluI	AGCT	3 cut(s)	190, 347, 572
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	2 cut(s)	595, 650
AlwI	GGATC	2 cut(s)	127, 412
AoxI	GGCC	3 cut(s)	632, 690, 753
ApeKI	GCWGC	2 cut(s)	364, 542
ApoI	RAATTY	2 cut(s)	391, 409
AspS9I	GGNCC	2 cut(s)	643, 753
AsuC2I	CCSGG	2 cut(s)	535, 636
AsuHPI	GGTGA	3 cut(s)	142, 215, 523
AvaII	GGWCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	574
BbsI	GAAGAC	3 cut(s)	7, 677, 711
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	2 cut(s)	351, 529
BccI	CCATC	2 cut(s)	122, 718
BceAI	ACGGC	2 cut(s)	689, 705
BciT130I	CCWGG	3 cut(s)	137, 553, 734
BcnI	CCSGG	2 cut(s)	535, 636
BcoDI	GTCTC	2 cut(s)	595, 650
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	2 cut(s)	365, 543
BlsI	GCNGC	2 cut(s)	366, 544
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	5 cut(s)	137, 535, 553, 636, 734
Bme18I	GGWCC	1 cut(s)	643
BmgT120I	GGNCC	2 cut(s)	643, 753
BmiI	GGNNCC	3 cut(s)	492, 644, 754
BmrFI	CCNGG	5 cut(s)	137, 535, 553, 636, 734
BmrI	ACTGGG	2 cut(s)	151, 709
BmsI	GCATC	2 cut(s)	192, 566
BmuI	ACTGGG	2 cut(s)	151, 709
BoxI	GACNNNNGTC	1 cut(s)	215
BpiI	GAAGAC	3 cut(s)	7, 677, 711
BpmI	CTGGAG	1 cut(s)	716
BpuEI	CTTGAG	1 cut(s)	64
BpuMI	CCSGG	2 cut(s)	535, 636
Bsa29I	ATCGAT	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	674
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	2 cut(s)	534, 552
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 265, 552, 553
Bse1I	ACTGG	4 cut(s)	48, 146, 565, 715
Bse3DI	GCAATG	2 cut(s)	385, 677
BseBI	CCWGG	3 cut(s)	137, 553, 734
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	534, 552
BseGI	GGATG	3 cut(s)	114, 403, 710
BseLI	CCNNNNNNNGG	4 cut(s)	142, 265, 552, 553
BseMI	GCAATG	2 cut(s)	385, 677
BseMII	CTCAG	1 cut(s)	643
BseNI	ACTGG	4 cut(s)	48, 146, 565, 715
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	2 cut(s)	351, 529
BseYI	CCCAGC	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	3 cut(s)	634, 692, 755
BshVI	ATCGAT	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	2 cut(s)	534, 635
BslFI	GGGAC	2 cut(s)	238, 692
BslI	CCNNNNNNNGG	4 cut(s)	142, 265, 552, 553
BsmAI	GTCTC	2 cut(s)	595, 650
BsmFI	GGGAC	2 cut(s)	238, 692
BsnI	GGCC	3 cut(s)	634, 692, 755
Bso31I	GGTCTC	1 cut(s)	595
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	121, 132, 417, 514
BspACI	CCGC	2 cut(s)	494, 652
BspANI	GGCC	3 cut(s)	634, 692, 755
BspCNI	CTCAG	1 cut(s)	642
BspDI	ATCGAT	1 cut(s)	513
BspFNI	CGCG	1 cut(s)	654
BspLI	GGNNCC	3 cut(s)	492, 644, 754
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	2 cut(s)	127, 412
BspTNI	GGTCTC	1 cut(s)	595
BsrDI	GCAATG	2 cut(s)	385, 677
BsrI	ACTGG	4 cut(s)	48, 146, 565, 715
BssECI	CCNNGG	2 cut(s)	534, 552
BssMI	GATC	4 cut(s)	121, 132, 417, 514
BssNI	GRCGYC	1 cut(s)	674
Bst2UI	CCWGG	3 cut(s)	137, 553, 734
Bst4CI	ACNGT	3 cut(s)	334, 431, 595
BstACI	GRCGYC	1 cut(s)	674
BstC8I	GCNNGC	4 cut(s)	439, 586, 694, 757
BstDEI	CTNAG	2 cut(s)	614, 629
BstF5I	GGATG	3 cut(s)	114, 403, 710
BstFNI	CGCG	1 cut(s)	654
BstKTI	GATC	4 cut(s)	124, 135, 420, 517
BstMAI	GTCTC	2 cut(s)	595, 650
BstMBI	GATC	4 cut(s)	121, 132, 417, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	585
BstNI	CCWGG	3 cut(s)	137, 553, 734
BstNSI	RCATGY	1 cut(s)	374
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	5 cut(s)	135, 533, 551, 634, 732
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	2 cut(s)	351, 529
BstV2I	GAAGAC	3 cut(s)	7, 677, 711
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
Bsu15I	ATCGAT	1 cut(s)	513
BsuRI	GGCC	3 cut(s)	634, 692, 755
BsuTUI	ATCGAT	1 cut(s)	513
BtsCI	GGATG	3 cut(s)	114, 403, 710
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	4 cut(s)	439, 586, 694, 757
Cfr13I	GGNCC	2 cut(s)	643, 753
ClaI	ATCGAT	1 cut(s)	513
CseI	GACGC	2 cut(s)	682, 748
Csp6I	GTAC	3 cut(s)	54, 111, 765
CviAII	CATG	2 cut(s)	32, 371
CviQI	GTAC	3 cut(s)	54, 111, 765
DdeI	CTNAG	2 cut(s)	614, 629
DpnI	GATC	4 cut(s)	123, 134, 419, 516
DpnII	GATC	4 cut(s)	121, 132, 417, 514
EciI	GGCGGA	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	572
Eco24I	GRGCYC	1 cut(s)	574
Eco31I	GGTCTC	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	643
Eco53kI	GAGCTC	1 cut(s)	572
EcoICRI	GAGCTC	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	409
EcoRII	CCWGG	3 cut(s)	135, 551, 732
EcoT38I	GRGCYC	1 cut(s)	574
FaeI	CATG	2 cut(s)	35, 374
FaqI	GGGAC	2 cut(s)	238, 692
FatI	CATG	2 cut(s)	31, 370
Fnu4HI	GCNGC	2 cut(s)	365, 543
FokI	GGATG	3 cut(s)	101, 410, 697
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	2 cut(s)	365, 543
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	2 cut(s)	365, 543
GsaI	CCCAGC	1 cut(s)	643
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	3 cut(s)	634, 692, 755
HapII	CCGG	2 cut(s)	534, 635
HgaI	GACGC	2 cut(s)	682, 748
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	2 cut(s)	35, 374
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	5 cut(s)	26, 77, 658, 699, 729
HpaII	CCGG	2 cut(s)	534, 635
HphI	GGTGA	3 cut(s)	142, 215, 523
Hpy166II	GTNNAC	2 cut(s)	111, 256
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	6 cut(s)	302, 323, 482, 518, 598, 667
Hpy8I	GTNNAC	2 cut(s)	111, 256
HpyCH4III	ACNGT	3 cut(s)	334, 431, 595
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	2 cut(s)	215, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	585
HpyF3I	CTNAG	2 cut(s)	614, 629
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	2 cut(s)	35, 374
Kzo9I	GATC	4 cut(s)	121, 132, 417, 514
LmnI	GCTCC	3 cut(s)	352, 496, 569
Lsp1109I	GCAGC	2 cut(s)	351, 529
LweI	GCATC	2 cut(s)	192, 566
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	8
MalI	GATC	4 cut(s)	123, 134, 419, 516
MboI	GATC	4 cut(s)	121, 132, 417, 514
MboII	GAAGA	3 cut(s)	7, 682, 711
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	8 cut(s)	42, 71, 313, 356, 391, 409, 457, 624
MlyI	GAGTC	3 cut(s)	71, 652, 723
MnlI	CCTC	6 cut(s)	85, 303, 361, 514, 517, 532
MseI	TTAA	1 cut(s)	87
MspI	CCGG	2 cut(s)	534, 635
MspR9I	CCNGG	5 cut(s)	137, 535, 553, 636, 734
MvaI	CCWGG	3 cut(s)	137, 553, 734
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	1 cut(s)	585
NciI	CCSGG	2 cut(s)	535, 636
NdeII	GATC	4 cut(s)	121, 132, 417, 514
NlaIII	CATG	2 cut(s)	35, 374
NlaIV	GGNNCC	3 cut(s)	492, 644, 754
NspI	RCATGY	1 cut(s)	374
PciI	ACATGT	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	26, 699
PfoI	TCCNGGA	2 cut(s)	135, 732
PkrI	GCNGC	2 cut(s)	366, 544
PleI	GAGTC	3 cut(s)	71, 652, 723
PpsI	GAGTC	3 cut(s)	71, 652, 723
PpuMI	RGGWCCY	1 cut(s)	643
PscI	ACATGT	1 cut(s)	370
PshAI	GACNNNNGTC	1 cut(s)	215
PsiI	TTATAA	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	574
Psp1406I	AACGTT	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	3 cut(s)	135, 551, 732
PspFI	CCCAGC	1 cut(s)	639
PspGI	CCWGG	3 cut(s)	135, 551, 732
PspN4I	GGNNCC	3 cut(s)	492, 644, 754
PspPI	GGNCC	2 cut(s)	643, 753
PspPPI	RGGWCCY	1 cut(s)	643
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	417
RsaI	GTAC	3 cut(s)	55, 112, 766
RsaNI	GTAC	3 cut(s)	54, 111, 765
SacI	GAGCTC	1 cut(s)	574
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	365, 543
Sau3AI	GATC	4 cut(s)	121, 132, 417, 514
Sau96I	GGNCC	2 cut(s)	643, 753
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	3 cut(s)	71, 652, 723
ScrFI	CCNGG	5 cut(s)	137, 535, 553, 636, 734
SduI	GDGCHC	1 cut(s)	574
SetI	ASST	6 cut(s)	11, 96, 192, 349, 554, 574
SfaNI	GCATC	2 cut(s)	192, 566
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	643
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	8 cut(s)	42, 71, 313, 356, 391, 409, 457, 624
SsiI	CCGC	2 cut(s)	494, 652
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	574
StyD4I	CCNGG	5 cut(s)	135, 533, 551, 634, 732
TaaI	ACNGT	3 cut(s)	334, 431, 595
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	322, 513, 574
TasI	AATT	8 cut(s)	42, 71, 313, 356, 391, 409, 457, 624
TatI	WGTACW	2 cut(s)	53, 764
TfiI	GAWTC	2 cut(s)	26, 699
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	339
TseI	GCWGC	2 cut(s)	364, 542
TspDTI	ATGAA	2 cut(s)	17, 321
TspRI	CASTG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	643
XapI	RAATTY	2 cut(s)	391, 409
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	1 cut(s)	261
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.