Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Reverse (-)

34718827 .. 34722755

Gene Structure 3929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56952

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1896 bp

ATGCTGTCGCCATTAAATTGCCGCCACCTCCAAATACCCAATATGCAAGCCAGCCCCTTTCAAGTCATTCCCAAACCAATATTTCCCTCACCGATAAACATACCTCCTGTGCACCGACGTCCTCCCTCGCAACGAGCTCTTGCCATCACTACTTCCACAGCCAATGAAACCCATACTCCAATTACCATGTCAACTCTAGAAGTGGTCGATGCCTCCGTGGCCGACTTCTGGGACTACCAGTTCCTCTTCGTCTCACAACGCTTGGAAACAAACGAGCCCGTGGCTCTACAAGTCGTCGAAGGTGCGGTCCCGACGGAGTTTCCTTCCGGAACATACTACTTGGCGGGACCGGGGATCTTCAGGGATGACCACGGTTCGACAATGCACCCTTTAGACGGTCACGGCTACCTCAGGGCTTTTACTTTCGATGGGGTTAATGGGGATAAGTTCAGTGTCAAGTTCATGGCGAGGTACGTGAATACTGAGGCAAAGGTGGAAGAGCACGACCCGGTGACCAACACGTGGCGGTTCCGACATAGGGGGTTGTTCTCGATGCTGAAGAGAGGAGAGAAAGTTTGGAACACCAAGGTGATGAAAAATGTGGCGAATACTAGTGTGTTGAGCTGGGGTGGGAGACTGATGTGCTTGTGGGATGGCGGGGAACCATACGAAATTGAACCAGAGAGGTTGGATACCATCGGGAAGGTCAAGCTGATGGATGGTTGGGATTCAGTGGTGGAGAGGAGAAGCGATGGTGGTGATGTATGGGATGTTGCAGCAAGGTTGCTGAAGCCGATTTTGTACGGAGTGTTTAAGATGCCAGTGAAGCGATTATTAGCACATTATAAGTTCGATGCTCGCAGAAATAGACTTATTTTAATGTCATGTAATGCAGAAGATATTTTTTTACCGCGCAACAATTTTACATTTTATGAATTTGATTCAAATTTTAAGGTGGTTGGAAAGAAAGAATTCATCATCCCTGATCACTTGATGATTCATGATTGGGCTTTCACAGCCACTAGTTATATACTATTTGCTAATCGTGTCAAGCTTGAATTCACAGGTGCAATGACTTCATTTTGTGGAATTACTCCAACAATTGCAGCATTATCAGTGAACCCTAGCAAGGAAACTTCTCCCATATATGTGCTTCCTCGGTTTCCTAATGAAGTGAATTATAATCGAGATTGGAGAGTGCCTGTTGAAGCTCCTTCACAATTTTGGCTGCTACATGTAGGCAATGCCTATGAGAGTTTGGATGAAAATGGGAATTCGGAGATCCAAATACAAGCTTCTGTTTGCTCTTACGAGTGGTTCACATTACATAAATTACTTGGATATGATTGGCAAAGTGGTAAACTGGACCCTTCGATTATGTACTTAAATGGAAACAAAAGCAAGAAAATGCCTCACCTTGTCCAGGTTTCCATCAACTTGGATACCGGTACCGATGGGATCTGTCAAAGATGTGATATTGAGCCATTAAACCAATGGATCAAGTCATCAGATTTTCCCGTCATAAATCCAGCATTTTCAGGCAGCAAGAATAAATACATATATGCAGCAGCTTTTTCAGGTTCTCGCAGGGCATTGCCAAACTTTCCATATGACATGGTGGTGAAGCTCAATCTTTCAACTAAATCTGTGCGCACATGGTCTGCTGATAGTCGAAGATTTATCGGCGAACCCACTTTCATAGCCAAAGGTTCCGAAGAAGATGAGGGTTACATTCTTGTGGTTGAGGTATATGCAGTTGCAGTTCAAAGGTGCTATCTGGTTATCTTGGATTCAAAGAGGATTGGAGCGGCTGATACACTTGTGGCAAGACTTGAAGTCCCCAAACACCTAAATTTTCCTCTTGGTTTTCATGGTTTCTGGGCCAGTAACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

631

Amino Acids

71.57

Weight (kDa)

6.98

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	84 - 628	1.2e-86	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	846, 1182
AatII	GACGTC	1 cut(s)	121
Acc16I	TGCGCA	1 cut(s)	1652
Acc65I	GGTACC	1 cut(s)	1448
AccB1I	GGYRCC	1 cut(s)	1448
AccB7I	CCANNNNNTGG	1 cut(s)	522
AccBSI	CCGCTC	1 cut(s)	1808
AccII	CGCG	1 cut(s)	913
AccIII	TCCGGA	1 cut(s)	326
AciI	CCGC	7 cut(s)	22, 305, 344, 526, 657, 911, 1808
AclWI	GGATC	4 cut(s)	362, 1276, 1466, 1505
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	6 cut(s)	935, 946, 971, 1058, 1273, 1852
AcuI	CTGAAG	3 cut(s)	343, 578, 809
AcvI	CACGTG	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	4 cut(s)	473, 803, 1382, 1450
AfiI	CCNNNNNNNGG	6 cut(s)	228, 395, 522, 538, 1129, 1423
AflIII	ACRYGT	2 cut(s)	519, 1234
AgeI	ACCGGT	1 cut(s)	1445
AgsI	TTSAA	9 cut(s)	62, 677, 945, 1058, 1208, 1638, 1766, 1794, 1835
AhdI	GACNNNNNGTC	1 cut(s)	1835
AhlI	ACTAGT	2 cut(s)	611, 1022
AjnI	CCWGG	1 cut(s)	1422
AleI	CACNNNNGTG	1 cut(s)	587
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	8 cut(s)	137, 624, 712, 1054, 1211, 1295, 1571, 1627
AluI	AGCT	8 cut(s)	137, 624, 712, 1054, 1211, 1295, 1571, 1627
Alw21I	GWGCWC	3 cut(s)	114, 139, 504
Alw26I	GTCTC	2 cut(s)	256, 628
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	4 cut(s)	362, 1276, 1466, 1505
Aor13HI	TCCGGA	1 cut(s)	326
AoxI	GGCC	2 cut(s)	219, 1881
ApaLI	GTGCAC	1 cut(s)	110
ApeKI	GCWGC	6 cut(s)	776, 1106, 1228, 1542, 1565, 1568
ApoI	RAATTY	6 cut(s)	935, 946, 971, 1058, 1273, 1852
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AsiGI	ACCGGT	1 cut(s)	1445
Asp700I	GAANNNNTTC	1 cut(s)	971
Asp718I	GGTACC	1 cut(s)	1448
AspLEI	GCGC	2 cut(s)	915, 1653
AspS9I	GGNCC	4 cut(s)	307, 347, 1366, 1881
AsuC2I	CCSGG	2 cut(s)	351, 509
AsuHPI	GGTGA	6 cut(s)	81, 523, 601, 770, 1406, 1633
AvaII	GGWCC	3 cut(s)	307, 347, 1366
AxyI	CCTNAGG	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	114
BaeI	ACNNNNGTAYC	2 cut(s)	1806, 1839
BanI	GGYRCC	1 cut(s)	1448
BanII	GRGCYC	2 cut(s)	139, 279
BbrPI	CACGTG	1 cut(s)	522
Bbv12I	GWGCWC	3 cut(s)	114, 139, 504
BbvI	GCAGC	6 cut(s)	788, 1118, 1215, 1554, 1577, 1580
BccI	CCATC	9 cut(s)	152, 422, 647, 704, 709, 713, 746, 1439, 1448
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	1424
BciVI	GTATCC	2 cut(s)	685, 1435
BclI	TGATCA	1 cut(s)	985
BcnI	CCSGG	2 cut(s)	351, 509
BcoDI	GTCTC	2 cut(s)	256, 628
BcuI	ACTAGT	2 cut(s)	611, 1022
BfaI	CTAG	4 cut(s)	197, 612, 1023, 1125
BfuI	GTATCC	2 cut(s)	685, 1435
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	8 cut(s)	22, 777, 1107, 1229, 1543, 1566, 1569, 1809
BlsI	GCNGC	8 cut(s)	23, 778, 1108, 1230, 1544, 1567, 1570, 1810
Bme1390I	CCNGG	3 cut(s)	351, 509, 1424
Bme18I	GGWCC	3 cut(s)	307, 347, 1366
BmeRI	GACNNNNNGTC	1 cut(s)	1835
BmgT120I	GGNCC	4 cut(s)	307, 347, 1366, 1881
BmiI	GGNNCC	7 cut(s)	309, 348, 530, 663, 1368, 1450, 1711
BmrFI	CCNGG	3 cut(s)	351, 509, 1424
BmsI	GCATC	4 cut(s)	199, 543, 807, 844
BpuMI	CCSGG	2 cut(s)	351, 509
BsaAI	YACGTR	2 cut(s)	475, 522
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	6 cut(s)	216, 279, 350, 370, 585, 1157
BsaWI	WCCGGW	2 cut(s)	326, 1445
BsaXI	ACNNNNNCTCC	4 cut(s)	160, 190, 558, 588
Bsc4I	CCNNNNNNNGG	6 cut(s)	228, 395, 522, 538, 1129, 1423
Bse118I	RCCGGY	1 cut(s)	1445
Bse1I	ACTGG	4 cut(s)	238, 821, 1368, 1884
Bse21I	CCTNAGG	1 cut(s)	410
Bse3DI	GCAATG	3 cut(s)	1077, 1249, 1592
BseAI	TCCGGA	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	1424
BseDI	CCNNGG	6 cut(s)	216, 279, 350, 370, 585, 1157
BseGI	GGATG	6 cut(s)	370, 658, 724, 775, 978, 1267
BseLI	CCNNNNNNNGG	6 cut(s)	228, 395, 522, 538, 1129, 1423
BseMI	GCAATG	3 cut(s)	1077, 1249, 1592
BseMII	CTCAG	2 cut(s)	424, 474
BseNI	ACTGG	4 cut(s)	238, 821, 1368, 1884
BseRI	GAGGAG	2 cut(s)	579, 757
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	6 cut(s)	788, 1118, 1215, 1554, 1577, 1580
BseYI	CCCAGC	1 cut(s)	624
Bsh1236I	CGCG	1 cut(s)	913
BshFI	GGCC	2 cut(s)	221, 1883
BshNI	GGYRCC	1 cut(s)	1448
BshTI	ACCGGT	1 cut(s)	1445
BsiHKAI	GWGCWC	3 cut(s)	114, 139, 504
BsiSI	CCGG	4 cut(s)	327, 350, 509, 1446
BslFI	GGGAC	4 cut(s)	245, 293, 360, 1823
BslI	CCNNNNNNNGG	6 cut(s)	228, 395, 522, 538, 1129, 1423
BsmAI	GTCTC	2 cut(s)	256, 628
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	4 cut(s)	245, 293, 360, 1823
BsnI	GGCC	2 cut(s)	221, 1883
Bsp1286I	GDGCHC	4 cut(s)	114, 139, 279, 504
Bsp13I	TCCGGA	1 cut(s)	326
Bsp143I	GATC	5 cut(s)	354, 985, 1281, 1458, 1497
BspACI	CCGC	7 cut(s)	22, 305, 344, 526, 657, 911, 1808
BspANI	GGCC	2 cut(s)	221, 1883
BspCNI	CTCAG	2 cut(s)	423, 475
BspEI	TCCGGA	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	913
BspHI	TCATGA	1 cut(s)	1000
BspLI	GGNNCC	7 cut(s)	309, 348, 530, 663, 1368, 1450, 1711
BspPI	GGATC	4 cut(s)	362, 1276, 1466, 1505
BspQI	GCTCTTC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	1448
BsrBI	CCGCTC	1 cut(s)	1808
BsrDI	GCAATG	3 cut(s)	1077, 1249, 1592
BsrFI	RCCGGY	1 cut(s)	1445
BsrI	ACTGG	4 cut(s)	238, 821, 1368, 1884
BssAI	RCCGGY	1 cut(s)	1445
BssECI	CCNNGG	6 cut(s)	216, 279, 350, 370, 585, 1157
BssMI	GATC	5 cut(s)	354, 985, 1281, 1458, 1497
BssNI	GRCGYC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	1424
Bst4CI	ACNGT	2 cut(s)	374, 398
Bst6I	CTCTTC	3 cut(s)	251, 492, 554
BstACI	GRCGYC	1 cut(s)	118
BstBAI	YACGTR	2 cut(s)	475, 522
BstC8I	GCNNGC	3 cut(s)	48, 52, 859
BstDEI	CTNAG	2 cut(s)	410, 483
BstDSI	CCRYGG	3 cut(s)	216, 279, 370
BstEII	GGTNACC	1 cut(s)	511
BstENI	CCTNNNNNAGG	1 cut(s)	1421
BstF5I	GGATG	6 cut(s)	370, 658, 724, 775, 978, 1267
BstFNI	CGCG	1 cut(s)	913
BstHHI	GCGC	2 cut(s)	915, 1653
BstKTI	GATC	5 cut(s)	357, 988, 1284, 1461, 1500
BstMAI	GTCTC	2 cut(s)	256, 628
BstMBI	GATC	5 cut(s)	354, 985, 1281, 1458, 1497
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 826, 1016
BstNI	CCWGG	1 cut(s)	1424
BstNSI	RCATGY	1 cut(s)	1238
BstPI	GGTNACC	1 cut(s)	511
BstSCI	CCNGG	3 cut(s)	349, 507, 1422
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	913
BstV1I	GCAGC	6 cut(s)	788, 1118, 1215, 1554, 1577, 1580
BstX2I	RGATCY	3 cut(s)	354, 1281, 1458
BstXI	CCANNNNNNTGG	1 cut(s)	1438
BstYI	RGATCY	3 cut(s)	354, 1281, 1458
Bsu36I	CCTNAGG	1 cut(s)	410
BsuI	GTATCC	2 cut(s)	685, 1435
BsuRI	GGCC	2 cut(s)	221, 1883
BtgI	CCRYGG	3 cut(s)	216, 279, 370
BtgZI	GCGATG	1 cut(s)	765
BtsCI	GGATG	6 cut(s)	370, 658, 724, 775, 978, 1267
BtsIMutI	CAGTG	4 cut(s)	457, 738, 828, 1122
Cac8I	GCNNGC	3 cut(s)	48, 52, 859
CciI	TCATGA	1 cut(s)	1000
CfoI	GCGC	2 cut(s)	915, 1653
Cfr10I	RCCGGY	1 cut(s)	1445
Cfr13I	GGNCC	4 cut(s)	307, 347, 1366, 1881
Csp6I	GTAC	4 cut(s)	472, 802, 1381, 1449
CspAI	ACCGGT	1 cut(s)	1445
CviAII	CATG	8 cut(s)	187, 463, 885, 1001, 1235, 1615, 1656, 1871
CviQI	GTAC	4 cut(s)	472, 802, 1381, 1449
DdeI	CTNAG	2 cut(s)	410, 483
DpnI	GATC	5 cut(s)	356, 987, 1283, 1460, 1499
DpnII	GATC	5 cut(s)	354, 985, 1281, 1458, 1497
DriI	GACNNNNNGTC	1 cut(s)	1835
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	3 cut(s)	251, 492, 554
Eam1105I	GACNNNNNGTC	1 cut(s)	1835
EarI	CTCTTC	3 cut(s)	251, 492, 554
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	2 cut(s)	139, 279
Eco47I	GGWCC	3 cut(s)	307, 347, 1366
Eco53kI	GAGCTC	1 cut(s)	137
Eco57I	CTGAAG	3 cut(s)	343, 578, 809
Eco72I	CACGTG	1 cut(s)	522
Eco81I	CCTNAGG	1 cut(s)	410
Eco91I	GGTNACC	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	1421
EcoO65I	GGTNACC	1 cut(s)	511
EcoRI	GAATTC	3 cut(s)	971, 1058, 1273
EcoRII	CCWGG	1 cut(s)	1422
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	2 cut(s)	139, 279
ErhI	CCWWGG	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	8 cut(s)	190, 466, 888, 1004, 1238, 1618, 1659, 1874
FaqI	GGGAC	4 cut(s)	245, 293, 360, 1823
FatI	CATG	8 cut(s)	186, 462, 884, 1000, 1234, 1614, 1655, 1870
FauI	CCCGC	2 cut(s)	337, 650
FauNDI	CATATG	1 cut(s)	1609
FbaI	TGATCA	1 cut(s)	985
Fnu4HI	GCNGC	8 cut(s)	22, 777, 1107, 1229, 1543, 1566, 1569, 1809
FokI	GGATG	6 cut(s)	377, 665, 731, 782, 965, 1274
FriOI	GRGCYC	2 cut(s)	139, 279
Fsp4HI	GCNGC	8 cut(s)	22, 777, 1107, 1229, 1543, 1566, 1569, 1809
FspAI	RTGCGCAY	1 cut(s)	1652
FspBI	CTAG	4 cut(s)	197, 612, 1023, 1125
FspI	TGCGCA	1 cut(s)	1652
GlaI	GCGC	2 cut(s)	914, 1652
GluI	GCNGC	8 cut(s)	22, 777, 1107, 1229, 1543, 1566, 1569, 1809
GsaI	CCCAGC	1 cut(s)	628
HaeIII	GGCC	2 cut(s)	221, 1883
HapII	CCGG	4 cut(s)	327, 350, 509, 1446
HhaI	GCGC	2 cut(s)	915, 1653
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	8 cut(s)	190, 466, 888, 1004, 1238, 1618, 1659, 1874
Hin6I	GCGC	2 cut(s)	913, 1651
HinP1I	GCGC	2 cut(s)	913, 1651
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HindIII	AAGCTT	2 cut(s)	1052, 1293
HinfI	GANTC	4 cut(s)	728, 941, 997, 1790
HpaII	CCGG	4 cut(s)	327, 350, 509, 1446
HphI	GGTGA	6 cut(s)	81, 523, 601, 770, 1406, 1633
Hpy166II	GTNNAC	5 cut(s)	112, 192, 1120, 1320, 1361
Hpy188I	TCNGA	4 cut(s)	533, 1279, 1510, 1714
Hpy188III	TCNNGA	7 cut(s)	197, 310, 327, 550, 700, 1001, 1187
Hpy8I	GTNNAC	5 cut(s)	112, 192, 1120, 1320, 1361
Hpy99I	CGWCG	3 cut(s)	120, 299, 316
HpyAV	CCTTC	5 cut(s)	293, 333, 697, 1224, 1380
HpyCH4III	ACNGT	2 cut(s)	374, 398
HpyCH4IV	ACGT	3 cut(s)	118, 474, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 826, 1016
HpyF3I	CTNAG	2 cut(s)	410, 483
HpySE526I	ACGT	3 cut(s)	118, 474, 521
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	8 cut(s)	190, 466, 888, 1004, 1238, 1618, 1659, 1874
HspAI	GCGC	2 cut(s)	913, 1651
Kpn2I	TCCGGA	1 cut(s)	326
KpnI	GGTACC	1 cut(s)	1452
Ksp22I	TGATCA	1 cut(s)	985
Kzo9I	GATC	5 cut(s)	354, 985, 1281, 1458, 1497
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	2 cut(s)	1216, 1805
Lsp1109I	GCAGC	6 cut(s)	788, 1118, 1215, 1554, 1577, 1580
LweI	GCATC	4 cut(s)	199, 543, 807, 844
MaeI	CTAG	4 cut(s)	197, 612, 1023, 1125
MaeII	ACGT	3 cut(s)	118, 474, 521
MaeIII	GTNAC	4 cut(s)	398, 511, 1727, 1886
MalI	GATC	5 cut(s)	356, 987, 1283, 1460, 1499
MbiI	CCGCTC	1 cut(s)	1808
MboI	GATC	5 cut(s)	354, 985, 1281, 1458, 1497
MboII	GAAGA	8 cut(s)	238, 349, 509, 571, 908, 1686, 1727, 1730
MfeI	CAATTG	1 cut(s)	1101
MflI	RGATCY	3 cut(s)	354, 1281, 1458
MhlI	GDGCHC	4 cut(s)	114, 139, 279, 504
MmeI	TCCRAC	4 cut(s)	556, 669, 940, 1121
MroI	TCCGGA	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	971
MseI	TTAA	7 cut(s)	14, 435, 813, 878, 951, 1385, 1487
MslI	CAYNNNNRTG	4 cut(s)	587, 1148, 1619, 1736
MspI	CCGG	4 cut(s)	327, 350, 509, 1446
MspR9I	CCNGG	3 cut(s)	351, 509, 1424
MunI	CAATTG	1 cut(s)	1101
MvaI	CCWGG	1 cut(s)	1424
MvnI	CGCG	1 cut(s)	913
MwoI	GCNNNNNNNGC	3 cut(s)	218, 826, 1016
NciI	CCSGG	2 cut(s)	351, 509
NdeI	CATATG	1 cut(s)	1609
NdeII	GATC	5 cut(s)	354, 985, 1281, 1458, 1497
NlaIII	CATG	8 cut(s)	190, 466, 888, 1004, 1238, 1618, 1659, 1874
NlaIV	GGNNCC	7 cut(s)	309, 348, 530, 663, 1368, 1450, 1711
NmuCI	GTSAC	2 cut(s)	398, 511
NsbI	TGCGCA	1 cut(s)	1652
NspI	RCATGY	1 cut(s)	1238
OliI	CACNNNNGTG	1 cut(s)	587
PagI	TCATGA	1 cut(s)	1000
PciI	ACATGT	1 cut(s)	1234
PciSI	GCTCTTC	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	971
PfeI	GAWTC	4 cut(s)	728, 941, 997, 1790
PflMI	CCANNNNNTGG	1 cut(s)	522
PinAI	ACCGGT	1 cut(s)	1445
PkrI	GCNGC	8 cut(s)	23, 778, 1108, 1230, 1544, 1567, 1570, 1810
PmaCI	CACGTG	1 cut(s)	522
PmlI	CACGTG	1 cut(s)	522
Ppu21I	YACGTR	2 cut(s)	475, 522
PscI	ACATGT	1 cut(s)	1234
PsiI	TTATAA	2 cut(s)	846, 1182
Psp124BI	GAGCTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	1422
PspCI	CACGTG	1 cut(s)	522
PspEI	GGTNACC	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	1422
PspN4I	GGNNCC	7 cut(s)	309, 348, 530, 663, 1368, 1450, 1711
PspPI	GGNCC	4 cut(s)	307, 347, 1366, 1881
PsuI	RGATCY	3 cut(s)	354, 1281, 1458
RsaI	GTAC	4 cut(s)	473, 803, 1382, 1450
RsaNI	GTAC	4 cut(s)	472, 802, 1381, 1449
RseI	CAYNNNNRTG	4 cut(s)	587, 1148, 1619, 1736
SacI	GAGCTC	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	7 cut(s)	14, 435, 813, 878, 951, 1385, 1487
SatI	GCNGC	8 cut(s)	22, 777, 1107, 1229, 1543, 1566, 1569, 1809
Sau3AI	GATC	5 cut(s)	354, 985, 1281, 1458, 1497
Sau96I	GGNCC	4 cut(s)	307, 347, 1366, 1881
ScrFI	CCNGG	3 cut(s)	351, 509, 1424
SduI	GDGCHC	4 cut(s)	114, 139, 279, 504
SfaNI	GCATC	4 cut(s)	199, 543, 807, 844
SinI	GGWCC	3 cut(s)	307, 347, 1366
SmiMI	CAYNNNNRTG	4 cut(s)	587, 1148, 1619, 1736
SpeI	ACTAGT	2 cut(s)	611, 1022
SsiI	CCGC	7 cut(s)	22, 305, 344, 526, 657, 911, 1808
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	4 cut(s)	197, 612, 1023, 1125
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	3 cut(s)	349, 507, 1422
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	374, 398
TaiI	ACGT	3 cut(s)	121, 477, 524
TaqI	TCGA	9 cut(s)	207, 297, 377, 426, 551, 852, 1186, 1373, 1672
TatI	WGTACW	1 cut(s)	1380
TauI	GCSGC	2 cut(s)	24, 1811
TfiI	GAWTC	4 cut(s)	728, 941, 997, 1790
Tru1I	TTAA	7 cut(s)	14, 435, 813, 878, 951, 1385, 1487
Tru9I	TTAA	7 cut(s)	14, 435, 813, 878, 951, 1385, 1487
TscAI	CASTG	4 cut(s)	457, 738, 828, 1122
TseFI	GTSAC	2 cut(s)	398, 511
TseI	GCWGC	6 cut(s)	776, 1106, 1228, 1542, 1565, 1568
Tsp45I	GTSAC	2 cut(s)	398, 511
TspGWI	ACGGA	3 cut(s)	205, 329, 819
TspRI	CASTG	4 cut(s)	457, 738, 828, 1122
Van91I	CCANNNNNTGG	1 cut(s)	522
VneI	GTGCAC	1 cut(s)	110
VpaK11BI	GGWCC	3 cut(s)	307, 347, 1366
XagI	CCTNNNNNAGG	1 cut(s)	1421
XapI	RAATTY	6 cut(s)	935, 946, 971, 1058, 1273, 1852
XbaI	TCTAGA	1 cut(s)	196
XceI	RCATGY	1 cut(s)	1238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1491
XmnI	GAANNNNTTC	1 cut(s)	971
XspI	CTAG	4 cut(s)	197, 612, 1023, 1125
ZraI	GACGTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.