Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003991.1

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Reverse (-)

34961 .. 41328

Gene Structure 6368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003991.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgaggagaaaaggaaagaaaagacaaagaggggatgacagaaaagagaagaaaagggaagaaaagtttctctttgtctcgcaacgctcggaaacaaacgagccggtgactctagaagttgttgaaggtgcggtcccgccagagtttccttccggaacatactatttggcaggaccggggctcttcagggacgaccacggctccactgtgcaccctttggatggtcacggctaccttagggctttcactttccatggggttagtgggaacgaggtcaatgtcaagttcatggccaagtacgtgaaaactgagacgcagttggaagagcaggaccccgtgactggcaagtggcggttcacgcataggggagcgttctcggtgttgaagggaggacagaaattcgggaacactaaggtgatcaaaaacgtggcgaatactagtgtgttgagctggggtgggaggctgatgtgcttgtgggaaggtggtggggaaccttacgaaattgaaaaggagaccttggaaactgtcgggaaggtcaagctcatggaaggttgcgatccggtggtggagagtgcgagtgatggccgtggtgtttgggatgttgctgcaagattgttgaagccgattttgtatggagtgtttaagatgccagtaaagcgactgttagctcattacaagctcgacactaataaagatagacttcttatgatgtcatgtaatgcagaagacatactgttgccacacaatacttttacattttacgaatttgattcaaattttaaggaggtgggaaagaaagagttcatcatcccagaccacttgtacattcatgattgggctttcacaaccacttattatatactatttgctaaccgcgttaaacttaatgcttctgcaccggagcccgccaagtcgccaacgtctccggagggagacccatcaaacatccttgaccatcagtcctccacaacctcagccaaactaaggtacaggacaaaagctcctccattgcccaaagcaccacctccactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

344

Amino Acids

38.81

Weight (kDa)

9.06

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	876
AccIII	TCCGGA	2 cut(s)	152, 925
AciI	CCGC	5 cut(s)	131, 137, 352, 874, 906
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	2 cut(s)	291, 583
AcsI	RAATTY	3 cut(s)	398, 764, 775
AcuI	CTGAAG	1 cut(s)	169
AfaI	GTAC	3 cut(s)	299, 824, 989
AfiI	CCNNNNNNNGG	3 cut(s)	221, 341, 984
AgsI	TTSAA	5 cut(s)	125, 385, 506, 619, 774
AhdI	GACNNNNNGTC	1 cut(s)	958
AhlI	ACTAGT	1 cut(s)	437
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	5 cut(s)	450, 541, 668, 679, 1001
AluI	AGCT	5 cut(s)	450, 541, 668, 679, 1001
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	5 cut(s)	82, 305, 506, 927, 927
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	551
Aor13HI	TCCGGA	2 cut(s)	152, 925
AoxI	GGCC	2 cut(s)	291, 583
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	3 cut(s)	398, 764, 775
Asp700I	GAANNNNTTC	2 cut(s)	66, 800
AspS9I	GGNCC	3 cut(s)	133, 173, 331
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	118, 427
AvaII	GGWCC	3 cut(s)	133, 173, 331
AxyI	CCTNAGG	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	293
BanII	GRGCYC	2 cut(s)	183, 906
BbsI	GAAGAC	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	973
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	4 cut(s)	215, 575, 946, 963
BceAI	ACGGC	3 cut(s)	214, 244, 570
BclI	TGATCA	1 cut(s)	417
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	5 cut(s)	82, 305, 506, 927, 927
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	2 cut(s)	113, 438
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	3 cut(s)	133, 173, 331
BmeRI	GACNNNNNGTC	1 cut(s)	958
BmgT120I	GGNCC	3 cut(s)	133, 173, 331
BmiI	GGNNCC	5 cut(s)	135, 202, 333, 492, 903
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	636
BpiI	GAAGAC	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	973
BpuMI	CCSGG	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	301
BsaI	GGTCTC	2 cut(s)	506, 927
BsaJI	CCNNGG	5 cut(s)	176, 196, 253, 516, 586
BsaWI	WCCGGW	4 cut(s)	152, 559, 898, 925
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 985, 1015
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 341, 984
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	346, 650
Bse21I	CCTNAGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	1007
BseAI	TCCGGA	2 cut(s)	152, 925
BseDI	CCNNGG	5 cut(s)	176, 196, 253, 516, 586
BseGI	GGATG	5 cut(s)	40, 226, 604, 807, 945
BseLI	CCNNNNNNNGG	3 cut(s)	221, 341, 984
BseMI	GCAATG	1 cut(s)	1007
BseMII	CTCAG	2 cut(s)	300, 987
BseNI	ACTGG	2 cut(s)	346, 650
BseRI	GAGGAG	2 cut(s)	19, 993
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	592
BseYI	CCCAGC	1 cut(s)	450
BsgI	GTGCAG	1 cut(s)	879
Bsh1236I	CGCG	1 cut(s)	876
BshFI	GGCC	2 cut(s)	293, 585
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	6 cut(s)	104, 153, 176, 560, 899, 926
BslFI	GGGAC	2 cut(s)	119, 203
BslI	CCNNNNNNNGG	3 cut(s)	221, 341, 984
BsmAI	GTCTC	5 cut(s)	82, 305, 506, 927, 927
BsmBI	CGTCTC	2 cut(s)	305, 927
BsmFI	GGGAC	2 cut(s)	119, 203
BsnI	GGCC	2 cut(s)	293, 585
Bso31I	GGTCTC	2 cut(s)	506, 927
Bsp1286I	GDGCHC	3 cut(s)	183, 213, 906
Bsp13I	TCCGGA	2 cut(s)	152, 925
Bsp1407I	TGTACA	1 cut(s)	822
Bsp143I	GATC	2 cut(s)	417, 556
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	5 cut(s)	131, 137, 352, 874, 906
BspANI	GGCC	2 cut(s)	293, 585
BspCNI	CTCAG	2 cut(s)	301, 986
BspEI	TCCGGA	2 cut(s)	152, 925
BspFNI	CGCG	1 cut(s)	876
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	5 cut(s)	135, 202, 333, 492, 903
BspPI	GGATC	1 cut(s)	551
BspQI	GCTCTTC	2 cut(s)	188, 318
BspTNI	GGTCTC	2 cut(s)	506, 927
BsrDI	GCAATG	1 cut(s)	1007
BsrFI	RCCGGY	1 cut(s)	103
BsrGI	TGTACA	1 cut(s)	822
BsrI	ACTGG	2 cut(s)	346, 650
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	5 cut(s)	176, 196, 253, 516, 586
BssMI	GATC	2 cut(s)	417, 556
BssT1I	CCWWGG	2 cut(s)	253, 516
Bst4CI	ACNGT	4 cut(s)	208, 526, 663, 735
Bst6I	CTCTTC	2 cut(s)	188, 318
BstAUI	TGTACA	1 cut(s)	822
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	906
BstDEI	CTNAG	5 cut(s)	236, 309, 411, 973, 983
BstDSI	CCRYGG	3 cut(s)	196, 253, 586
BstF5I	GGATG	5 cut(s)	40, 226, 604, 807, 945
BstFNI	CGCG	1 cut(s)	876
BstKTI	GATC	2 cut(s)	420, 559
BstMAI	GTCTC	5 cut(s)	82, 305, 506, 927, 927
BstMBI	GATC	2 cut(s)	417, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 655
BstSCI	CCNGG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	876
BstV1I	GCAGC	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	732
Bsu36I	CCTNAGG	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	293, 585
BtgI	CCRYGG	3 cut(s)	196, 253, 586
BtsCI	GGATG	5 cut(s)	40, 226, 604, 807, 945
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	906
CciI	TCATGA	1 cut(s)	829
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	3 cut(s)	133, 173, 331
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	3 cut(s)	298, 823, 988
CviAII	CATG	5 cut(s)	254, 289, 544, 714, 830
CviQI	GTAC	3 cut(s)	298, 823, 988
DdeI	CTNAG	5 cut(s)	236, 309, 411, 973, 983
DpnI	GATC	2 cut(s)	419, 558
DpnII	GATC	2 cut(s)	417, 556
DriI	GACNNNNNGTC	1 cut(s)	958
EaeI	YGGCCR	2 cut(s)	291, 583
Eam1104I	CTCTTC	2 cut(s)	188, 318
Eam1105I	GACNNNNNGTC	1 cut(s)	958
EarI	CTCTTC	2 cut(s)	188, 318
Eco130I	CCWWGG	2 cut(s)	253, 516
Eco24I	GRGCYC	2 cut(s)	183, 906
Eco31I	GGTCTC	2 cut(s)	506, 927
Eco47I	GGWCC	3 cut(s)	133, 173, 331
Eco57I	CTGAAG	1 cut(s)	169
Eco81I	CCTNAGG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	253, 516
EcoT38I	GRGCYC	2 cut(s)	183, 906
ErhI	CCWWGG	2 cut(s)	253, 516
Esp3I	CGTCTC	2 cut(s)	305, 927
FaeI	CATG	5 cut(s)	257, 292, 547, 717, 833
FalI	AAGNNNNNCTT	6 cut(s)	56, 88, 500, 532, 684, 716
FaqI	GGGAC	2 cut(s)	119, 203
FatI	CATG	5 cut(s)	253, 288, 543, 713, 829
FauI	CCCGC	2 cut(s)	144, 913
FbaI	TGATCA	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	5 cut(s)	47, 233, 611, 794, 932
FriOI	GRGCYC	2 cut(s)	183, 906
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	2 cut(s)	113, 438
GluI	GCNGC	1 cut(s)	606
GsaI	CCCAGC	1 cut(s)	454
HaeIII	GGCC	2 cut(s)	293, 585
HapII	CCGG	6 cut(s)	104, 153, 176, 560, 899, 926
HgaI	GACGC	1 cut(s)	322
Hin1II	CATG	5 cut(s)	257, 292, 547, 717, 833
HinfI	GANTC	2 cut(s)	109, 770
HpaII	CCGG	6 cut(s)	104, 153, 176, 560, 899, 926
HphI	GGTGA	2 cut(s)	118, 427
Hpy166II	GTNNAC	2 cut(s)	211, 357
Hpy188I	TCNGA	2 cut(s)	91, 1034
Hpy188III	TCNNGA	6 cut(s)	113, 153, 403, 529, 830, 926
Hpy8I	GTNNAC	2 cut(s)	211, 357
HpyAV	CCTTC	6 cut(s)	119, 159, 379, 473, 526, 542
HpyCH4III	ACNGT	4 cut(s)	208, 526, 663, 735
HpyCH4IV	ACGT	3 cut(s)	300, 426, 920
HpyCH4V	TGCA	4 cut(s)	211, 608, 722, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 655
HpyF3I	CTNAG	5 cut(s)	236, 309, 411, 973, 983
HpySE526I	ACGT	3 cut(s)	300, 426, 920
Hsp92II	CATG	5 cut(s)	257, 292, 547, 717, 833
Kpn2I	TCCGGA	2 cut(s)	152, 925
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	417, 556
LguI	GCTCTTC	2 cut(s)	188, 318
LmnI	GCTCC	4 cut(s)	206, 368, 901, 1006
Lsp1109I	GCAGC	1 cut(s)	592
LweI	GCATC	1 cut(s)	636
MaeI	CTAG	2 cut(s)	113, 438
MaeII	ACGT	3 cut(s)	300, 426, 920
MaeIII	GTNAC	3 cut(s)	106, 224, 337
MalI	GATC	2 cut(s)	419, 558
MboI	GATC	2 cut(s)	417, 556
MboII	GAAGA	5 cut(s)	61, 71, 175, 335, 737
MhlI	GDGCHC	3 cut(s)	183, 213, 906
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	4 cut(s)	398, 501, 764, 775
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	300
Mox20I	TGGCCA	1 cut(s)	293
MroI	TCCGGA	2 cut(s)	152, 925
MroXI	GAANNNNTTC	2 cut(s)	66, 800
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	4 cut(s)	642, 780, 879, 885
MslI	CAYNNNNRTG	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	6 cut(s)	104, 153, 176, 560, 899, 926
MspR9I	CCNGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	876
MwoI	GCNNNNNNNGC	2 cut(s)	358, 655
NciI	CCSGG	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	2 cut(s)	417, 556
NlaIII	CATG	5 cut(s)	257, 292, 547, 717, 833
NlaIV	GGNNCC	5 cut(s)	135, 202, 333, 492, 903
NmuCI	GTSAC	3 cut(s)	106, 224, 337
OliI	CACNNNNGTG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	829
PciSI	GCTCTTC	2 cut(s)	188, 318
PdmI	GAANNNNTTC	2 cut(s)	66, 800
PfeI	GAWTC	1 cut(s)	770
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	301
PpuMI	RGGWCCY	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	450
PspN4I	GGNNCC	5 cut(s)	135, 202, 333, 492, 903
PspPI	GGNCC	3 cut(s)	133, 173, 331
PspPPI	RGGWCCY	1 cut(s)	331
RsaI	GTAC	3 cut(s)	299, 824, 989
RsaNI	GTAC	3 cut(s)	298, 823, 988
RseI	CAYNNNNRTG	1 cut(s)	413
SapI	GCTCTTC	2 cut(s)	188, 318
SaqAI	TTAA	4 cut(s)	642, 780, 879, 885
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	2 cut(s)	417, 556
Sau96I	GGNCC	3 cut(s)	133, 173, 331
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	3 cut(s)	183, 213, 906
SfaNI	GCATC	1 cut(s)	636
SinI	GGWCC	3 cut(s)	133, 173, 331
SmiMI	CAYNNNNRTG	1 cut(s)	413
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	4 cut(s)	398, 501, 764, 775
SsiI	CCGC	5 cut(s)	131, 137, 352, 874, 906
SspMI	CTAG	2 cut(s)	113, 438
StyD4I	CCNGG	1 cut(s)	175
StyI	CCWWGG	2 cut(s)	253, 516
TaaI	ACNGT	4 cut(s)	208, 526, 663, 735
TaiI	ACGT	3 cut(s)	303, 429, 923
TaqI	TCGA	1 cut(s)	681
TasI	AATT	4 cut(s)	398, 501, 764, 775
TatI	WGTACW	1 cut(s)	822
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	4 cut(s)	642, 780, 879, 885
Tru9I	TTAA	4 cut(s)	642, 780, 879, 885
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	3 cut(s)	106, 224, 337
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	3 cut(s)	106, 224, 337
TspDTI	ATGAA	3 cut(s)	277, 793, 818
TspRI	CASTG	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	3 cut(s)	133, 173, 331
XapI	RAATTY	3 cut(s)	398, 764, 775
XbaI	TCTAGA	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmnI	GAANNNNTTC	2 cut(s)	66, 800
XspI	CTAG	2 cut(s)	113, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.