Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

40454323 .. 40459200

Gene Structure 4878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG206700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1857 bp

ATGCAAACCAACCCCTTCCAAATCATAGTTCCAAAACCAATATTCCCCTCACTGATGAATCTACCGGCGGTGTACCGCCCTCCTCCGTCGACGCCGCTGCTTAAACCGCCACGTGCCATCTCCATTTCCACACCCAACGGAAGTACTACTCCGACCACCACCGTTTCAACCATAGACGTGGTCAATGACTCCGTTGCCGCATTCTGGGACTACCAGTTCCTCTTCGTCTCGCAACGCTCCGAAACAACAGAACCGGTGACACTCCGAGTGGTTGAAGGCGCAGTCCCGCCGGAGTTTCCTTCCGGAACGTACTACTTGACGGGACCGGGGCTCTTCAGCGACGACCATGGCTCCACTGTGCACCCTTTGGACGGTCACGGCTACCTCAGGGCTTTTAGGTTTGATGGGATTAATGGGGACGAGGTGAAGGTCAAGTTCATGGCCAAGTACGTGAAGACTGAGGCGCAGGTGGAAGAGCACGATCCGGTGACCGGAGCGTGGCGGTTCACGCACAGGGGGCCTTTTTCGGTATTGAAGGGAGGACAGAAAGTTGGGAACACTAAGGTGATGAAGAATGTGGCGAATACTAGTGTGTTGAGCTGGGGAGGGAGGCTGTTGTGCTTGTGGGAAGGTGGCGACCCGTATGAGATTGAACCGGAGACTTTGGCTACTGTCGGGAAGGTCAAGCTGATGGAGGGTTGTGATCCGGTGGTGGAGAGTGGTGGCGGTGGCGTATGGGATGTTGCTGCGAGGCTGCTGAAGCCGATATTGTACGGAGTATTTAAAATGCCACCTAAGCGACTATTGTCTCATTACAAGCTGGACACTTGCAAAAATCGGCTTCTTATGATGTCGTGCAATGCAGAAGATATGCTTCTGCCACGTAGTCATTTTACATTTTATGAATTTGACTCAAGTTTTAAGGAGGTGGCAAAGCAAGAGTTTACCATCCCAGATCACTTGATGATCCATGACTGGGCTTTCACTGACACTCATTATATCTTATTTGCTAATCGCATCAAGCTTGATGTTGTCGGTGCAATGACTGCAGTCTGTGGGACTACACCGATGATAACAGCATTATCAGTAAACCCTAGCAAGGACACTTCTCCCATATACTTGCTTCCTCGCTTTCCCGATGAAGTGAATTATAATCGAGATTGGAGAGTGCCTATTGAAGCTCCTTCACAGTTTTGGCTGCTACATGTATGCAATGCCTATGAGAATTTGGATGAGAATGGGAATTCGGAGATCCAAATACACGGCTCTGCTTGCTCTTACGAGTGGTTCAATTTCCAAAAGTTATTTGGATATGATTGGCAAAGTGGTAAACTAGACCCTTCGGTTATGAACATAAATGGAAGCCAAAGCAAGACATTGCCTCACCTTGTTCAGGTTTCCATCAACTTGGATGCCAATGGGAACTGTCAAAGATGTGATGCGGAGCCTTTGAACGAGTGGAACAAGTCATCAGATTTTCCAGTGATCAATCCAGCATTTTCAGGCAGCAAAAACAAATACATATATGCAGCAGCTTCTTCGGGTTCTCGCAGTGCATTGCCAAGCTTTCCATTTGACATGGTGGTGAAGCTGAATGCTTCAACTAAATCTGTGCACACATGGTCTGTTGGTAGTAGAAGATTTATCGGAGAACCCACTTTCATCGCCAAAGGTTCTGAAGAAGATGAAGGTTACATTCTTGTAGTCGAGTATGCAGTTGCAGTTCAAAGGTGCTATCTGGTTATCTTGGATTCGAAGAAGATTGGAGCAGCTGATGCACTTGTGGCAAGACTAGAAGTCCCCAAGCACCTAAATTTTCCTCTTGGTTTTCATGGTTTTTGGGCTGGTGACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

618

Amino Acids

68.71

Weight (kDa)

6.08

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	76 - 615	2.3e-91	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1152
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	457
AccI	GTMKAC	1 cut(s)	89
AccIII	TCCGGA	1 cut(s)	302
AciI	CCGC	9 cut(s)	68, 76, 95, 107, 198, 287, 502, 726, 1442
AclWI	GGATC	4 cut(s)	476, 698, 961, 1246
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	4 cut(s)	905, 1225, 1243, 1813
AcuI	CTGAAG	3 cut(s)	319, 779, 1698
AcvI	CACGTG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	5 cut(s)	74, 145, 311, 449, 773
AfiI	CCNNNNNNNGG	7 cut(s)	204, 371, 491, 498, 976, 1099, 1393
AflIII	ACRYGT	1 cut(s)	1204
AgeI	ACCGGT	1 cut(s)	253
AgsI	TTSAA	9 cut(s)	168, 275, 535, 653, 1178, 1291, 1453, 1602, 1727
AhdI	GACNNNNNGTC	1 cut(s)	1796
AhlI	ACTAGT	1 cut(s)	587
AjiI	CACGTC	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	563
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	9 cut(s)	600, 688, 820, 1024, 1181, 1535, 1566, 1591, 1772
AluI	AGCT	9 cut(s)	600, 688, 820, 1024, 1181, 1535, 1566, 1591, 1772
Alw21I	GWGCWC	3 cut(s)	363, 480, 1617
Alw26I	GTCTC	3 cut(s)	232, 653, 813
Alw44I	GTGCAC	2 cut(s)	359, 1613
AlwI	GGATC	4 cut(s)	476, 698, 961, 1246
Aor13HI	TCCGGA	1 cut(s)	302
AoxI	GGCC	2 cut(s)	441, 518
ApaLI	GTGCAC	2 cut(s)	359, 1613
ApeKI	GCWGC	8 cut(s)	97, 746, 754, 1198, 1506, 1529, 1532, 1769
ApoI	RAATTY	4 cut(s)	905, 1225, 1243, 1813
AseI	ATTAAT	1 cut(s)	411
AsiGI	ACCGGT	1 cut(s)	253
AspLEI	GCGC	2 cut(s)	281, 466
AspS9I	GGNCC	2 cut(s)	323, 518
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	6 cut(s)	268, 436, 499, 577, 1376, 1597
AsuII	TTCGAA	1 cut(s)	1754
AvaII	GGWCC	1 cut(s)	323
AxyI	CCTNAGG	1 cut(s)	386
BaeGI	GKGCMC	2 cut(s)	363, 1617
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	3 cut(s)	363, 480, 1617
BbvI	GCAGC	8 cut(s)	84, 733, 741, 1185, 1518, 1541, 1544, 1781
BccI	CCATC	5 cut(s)	125, 398, 685, 956, 1409
BceAI	ACGGC	2 cut(s)	394, 1279
BcgI	CGANNNNNNTGC	4 cut(s)	79, 113, 1521, 1555
BclI	TGATCA	1 cut(s)	1485
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	232, 653, 813
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	4 cut(s)	588, 1095, 1334, 1793
BfmI	CTRYAG	1 cut(s)	1047
BfuAI	ACCTGC	1 cut(s)	457
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	323
BmeRI	GACNNNNNGTC	1 cut(s)	1796
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	323, 518
BmiI	GGNNCC	4 cut(s)	324, 352, 519, 1446
BmrFI	CCNGG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	985
BmsI	GCATC	4 cut(s)	1026, 1402, 1429, 1765
BmuI	ACTGGG	1 cut(s)	985
BoxI	GACNNNNGTC	2 cut(s)	805, 1049
BpiI	GAAGAC	1 cut(s)	461
Bpu10I	CCTNAGC	1 cut(s)	795
Bpu14I	TTCGAA	1 cut(s)	1754
BpuEI	CTTGAG	1 cut(s)	898
BpuMI	CCSGG	1 cut(s)	327
BsaAI	YACGTR	3 cut(s)	113, 451, 884
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	326, 346
BsaWI	WCCGGW	6 cut(s)	253, 302, 484, 491, 655, 706
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	7 cut(s)	204, 371, 491, 498, 976, 1099, 1393
Bse118I	RCCGGY	2 cut(s)	64, 253
Bse1I	ACTGG	3 cut(s)	214, 980, 1481
Bse21I	CCTNAGG	1 cut(s)	386
Bse3DI	GCAATG	5 cut(s)	865, 1047, 1219, 1376, 1556
BseAI	TCCGGA	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	326, 346
BseGI	GGATG	4 cut(s)	745, 948, 1237, 1417
BseLI	CCNNNNNNNGG	7 cut(s)	204, 371, 491, 498, 976, 1099, 1393
BseMI	GCAATG	5 cut(s)	865, 1047, 1219, 1376, 1556
BseMII	CTCAG	2 cut(s)	400, 450
BseNI	ACTGG	3 cut(s)	214, 980, 1481
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	2 cut(s)	363, 1617
BseXI	GCAGC	8 cut(s)	84, 733, 741, 1185, 1518, 1541, 1544, 1781
BseYI	CCCAGC	1 cut(s)	600
BshFI	GGCC	2 cut(s)	443, 520
BshTI	ACCGGT	1 cut(s)	253
BsiHKAI	GWGCWC	3 cut(s)	363, 480, 1617
BsiSI	CCGG	9 cut(s)	65, 254, 290, 303, 326, 485, 492, 656, 707
BslFI	GGGAC	6 cut(s)	221, 269, 336, 431, 1072, 1784
BslI	CCNNNNNNNGG	7 cut(s)	204, 371, 491, 498, 976, 1099, 1393
BsmAI	GTCTC	3 cut(s)	232, 653, 813
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	6 cut(s)	221, 269, 336, 431, 1072, 1784
BsmI	GAATGC	2 cut(s)	200, 1600
BsnI	GGCC	2 cut(s)	443, 520
Bsp119I	TTCGAA	1 cut(s)	1754
Bsp1286I	GDGCHC	4 cut(s)	333, 363, 480, 1617
Bsp13I	TCCGGA	1 cut(s)	302
Bsp143I	GATC	6 cut(s)	481, 703, 955, 966, 1251, 1485
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	9 cut(s)	68, 76, 95, 107, 198, 287, 502, 726, 1442
BspANI	GGCC	2 cut(s)	443, 520
BspCNI	CTCAG	2 cut(s)	399, 451
BspEI	TCCGGA	1 cut(s)	302
BspLI	GGNNCC	4 cut(s)	324, 352, 519, 1446
BspMAI	CTGCAG	1 cut(s)	1051
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	4 cut(s)	476, 698, 961, 1246
BspQI	GCTCTTC	2 cut(s)	338, 468
BspT104I	TTCGAA	1 cut(s)	1754
BsrDI	GCAATG	5 cut(s)	865, 1047, 1219, 1376, 1556
BsrFI	RCCGGY	2 cut(s)	64, 253
BsrI	ACTGG	3 cut(s)	214, 980, 1481
BssAI	RCCGGY	2 cut(s)	64, 253
BssECI	CCNNGG	2 cut(s)	326, 346
BssMI	GATC	6 cut(s)	481, 703, 955, 966, 1251, 1485
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	6 cut(s)	163, 358, 374, 673, 1191, 1427
Bst6I	CTCTTC	3 cut(s)	227, 338, 468
BstACI	GRCGYC	1 cut(s)	92
BstAPI	GCANNNNNTGC	2 cut(s)	1046, 1775
BstBAI	YACGTR	3 cut(s)	113, 451, 884
BstBI	TTCGAA	1 cut(s)	1754
BstC8I	GCNNGC	1 cut(s)	1273
BstDEI	CTNAG	4 cut(s)	386, 459, 561, 795
BstDSI	CCRYGG	1 cut(s)	346
BstEII	GGTNACC	1 cut(s)	487
BstENI	CCTNNNNNAGG	1 cut(s)	1391
BstF5I	GGATG	4 cut(s)	745, 948, 1237, 1417
BstHHI	GCGC	2 cut(s)	281, 466
BstKTI	GATC	6 cut(s)	484, 706, 958, 969, 1254, 1488
BstMAI	GTCTC	3 cut(s)	232, 653, 813
BstMBI	GATC	6 cut(s)	481, 703, 955, 966, 1251, 1485
BstMWI	GCNNNNNNNGC	9 cut(s)	106, 508, 517, 760, 796, 1046, 1272, 1775, 1784
BstNSI	RCATGY	1 cut(s)	1208
BstPAI	GACNNNNGTC	2 cut(s)	805, 1049
BstPI	GGTNACC	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	1047
BstSLI	GKGCMC	2 cut(s)	363, 1617
BstV1I	GCAGC	8 cut(s)	84, 733, 741, 1185, 1518, 1541, 1544, 1781
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	1251
BstXI	CCANNNNNNTGG	2 cut(s)	178, 1408
BstYI	RGATCY	1 cut(s)	1251
Bsu36I	CCTNAGG	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	443, 520
BtgI	CCRYGG	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	1648
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	4 cut(s)	745, 948, 1237, 1417
BtsI	GCAGTG	1 cut(s)	1558
BtsIMutI	CAGTG	5 cut(s)	50, 354, 984, 1488, 1558
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	1273
CfoI	GCGC	2 cut(s)	281, 466
Cfr10I	RCCGGY	2 cut(s)	64, 253
Cfr13I	GGNCC	2 cut(s)	323, 518
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	5 cut(s)	73, 144, 310, 448, 772
CspAI	ACCGGT	1 cut(s)	253
CviAII	CATG	7 cut(s)	347, 439, 971, 1205, 1579, 1620, 1832
CviQI	GTAC	5 cut(s)	73, 144, 310, 448, 772
DdeI	CTNAG	4 cut(s)	386, 459, 561, 795
DpnI	GATC	6 cut(s)	483, 705, 957, 968, 1253, 1487
DpnII	GATC	6 cut(s)	481, 703, 955, 966, 1251, 1485
DraI	TTTAAA	1 cut(s)	784
DriI	GACNNNNNGTC	1 cut(s)	1796
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	3 cut(s)	227, 338, 468
Eam1105I	GACNNNNNGTC	1 cut(s)	1796
EarI	CTCTTC	3 cut(s)	227, 338, 468
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	3 cut(s)	319, 779, 1698
Eco72I	CACGTG	1 cut(s)	113
Eco81I	CCTNAGG	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	487
EcoNI	CCTNNNNNAGG	1 cut(s)	1391
EcoO109I	RGGNCCY	1 cut(s)	518
EcoO65I	GGTNACC	1 cut(s)	487
EcoRI	GAATTC	1 cut(s)	1243
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	7 cut(s)	350, 442, 974, 1208, 1582, 1623, 1835
FalI	AAGNNNNNCTT	2 cut(s)	858, 890
FaqI	GGGAC	6 cut(s)	221, 269, 336, 431, 1072, 1784
FatI	CATG	7 cut(s)	346, 438, 970, 1204, 1578, 1619, 1831
FauI	CCCGC	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	1485
FblI	GTMKAC	1 cut(s)	89
FokI	GGATG	4 cut(s)	752, 935, 1244, 1424
FriOI	GRGCYC	1 cut(s)	333
FspBI	CTAG	4 cut(s)	588, 1095, 1334, 1793
GlaI	GCGC	2 cut(s)	280, 465
GsaI	CCCAGC	1 cut(s)	604
HaeIII	GGCC	2 cut(s)	443, 520
HapII	CCGG	9 cut(s)	65, 254, 290, 303, 326, 485, 492, 656, 707
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	281, 466
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	7 cut(s)	350, 442, 974, 1208, 1582, 1623, 1835
Hin6I	GCGC	2 cut(s)	279, 464
HinP1I	GCGC	2 cut(s)	279, 464
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	2 cut(s)	1022, 1564
HinfI	GANTC	4 cut(s)	58, 188, 911, 1751
HpaII	CCGG	9 cut(s)	65, 254, 290, 303, 326, 485, 492, 656, 707
HphI	GGTGA	6 cut(s)	268, 436, 499, 577, 1376, 1597
Hpy166II	GTNNAC	8 cut(s)	73, 90, 361, 507, 945, 1090, 1331, 1615
Hpy188I	TCNGA	7 cut(s)	153, 241, 266, 1249, 1474, 1649, 1678
Hpy188III	TCNNGA	4 cut(s)	303, 676, 1136, 1157
Hpy8I	GTNNAC	8 cut(s)	73, 90, 361, 507, 945, 1090, 1331, 1615
Hpy99I	CGWCG	3 cut(s)	91, 94, 344
HpyCH4III	ACNGT	6 cut(s)	163, 358, 374, 673, 1191, 1427
HpyCH4IV	ACGT	5 cut(s)	112, 177, 308, 450, 883
HpyF10VI	GCNNNNNNNGC	9 cut(s)	106, 508, 517, 760, 796, 1046, 1272, 1775, 1784
HpyF3I	CTNAG	4 cut(s)	386, 459, 561, 795
HpySE526I	ACGT	5 cut(s)	112, 177, 308, 450, 883
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	7 cut(s)	350, 442, 974, 1208, 1582, 1623, 1835
HspAI	GCGC	2 cut(s)	279, 464
Kpn2I	TCCGGA	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	1485
Kzo9I	GATC	6 cut(s)	481, 703, 955, 966, 1251, 1485
LguI	GCTCTTC	2 cut(s)	338, 468
LmnI	GCTCC	6 cut(s)	242, 356, 494, 1186, 1444, 1766
Lsp1109I	GCAGC	8 cut(s)	84, 733, 741, 1185, 1518, 1541, 1544, 1781
LweI	GCATC	4 cut(s)	1026, 1402, 1429, 1765
MaeI	CTAG	4 cut(s)	588, 1095, 1334, 1793
MaeII	ACGT	5 cut(s)	112, 177, 308, 450, 883
MaeIII	GTNAC	5 cut(s)	256, 374, 487, 1691, 1847
MalI	GATC	6 cut(s)	483, 705, 957, 968, 1253, 1487
MboI	GATC	6 cut(s)	481, 703, 955, 966, 1251, 1485
MflI	RGATCY	1 cut(s)	1251
MhlI	GDGCHC	4 cut(s)	333, 363, 480, 1617
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	6 cut(s)	905, 1147, 1225, 1243, 1291, 1813
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	2 cut(s)	182, 905
MmeI	TCCRAC	1 cut(s)	176
Mox20I	TGGCCA	1 cut(s)	443
MroI	TCCGGA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	4 cut(s)	102, 411, 783, 921
MslI	CAYNNNNRTG	3 cut(s)	176, 563, 1583
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	2 cut(s)	97, 1772
MspI	CCGG	9 cut(s)	65, 254, 290, 303, 326, 485, 492, 656, 707
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	2 cut(s)	200, 1600
MwoI	GCNNNNNNNGC	9 cut(s)	106, 508, 517, 760, 796, 1046, 1272, 1775, 1784
NciI	CCSGG	1 cut(s)	327
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	6 cut(s)	481, 703, 955, 966, 1251, 1485
NlaIII	CATG	7 cut(s)	350, 442, 974, 1208, 1582, 1623, 1835
NlaIV	GGNNCC	4 cut(s)	324, 352, 519, 1446
NmuCI	GTSAC	4 cut(s)	256, 374, 487, 1847
NspI	RCATGY	1 cut(s)	1208
NspV	TTCGAA	1 cut(s)	1754
OliI	CACNNNNGTG	1 cut(s)	563
PaqCI	CACCTGC	1 cut(s)	457
PciI	ACATGT	1 cut(s)	1204
PciSI	GCTCTTC	2 cut(s)	338, 468
PctI	GAATGC	2 cut(s)	200, 1600
PfeI	GAWTC	2 cut(s)	58, 1751
PflFI	GACNNNGTC	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	253
PleI	GAGTC	2 cut(s)	182, 905
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
PpsI	GAGTC	2 cut(s)	182, 905
Ppu21I	YACGTR	3 cut(s)	113, 451, 884
PscI	ACATGT	1 cut(s)	1204
PshAI	GACNNNNGTC	2 cut(s)	805, 1049
PshBI	ATTAAT	1 cut(s)	411
PsiI	TTATAA	1 cut(s)	1152
PspCI	CACGTG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	600
PspN4I	GGNNCC	4 cut(s)	324, 352, 519, 1446
PspPI	GGNCC	2 cut(s)	323, 518
PstI	CTGCAG	1 cut(s)	1051
PsuI	RGATCY	1 cut(s)	1251
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	1772
RsaI	GTAC	5 cut(s)	74, 145, 311, 449, 773
RsaNI	GTAC	5 cut(s)	73, 144, 310, 448, 772
RseI	CAYNNNNRTG	3 cut(s)	176, 563, 1583
SalI	GTCGAC	1 cut(s)	88
SapI	GCTCTTC	2 cut(s)	338, 468
SaqAI	TTAA	4 cut(s)	102, 411, 783, 921
Sau3AI	GATC	6 cut(s)	481, 703, 955, 966, 1251, 1485
Sau96I	GGNCC	2 cut(s)	323, 518
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	2 cut(s)	182, 905
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	4 cut(s)	333, 363, 480, 1617
SfaNI	GCATC	4 cut(s)	1026, 1402, 1429, 1765
SfcI	CTRYAG	1 cut(s)	1047
SfuI	TTCGAA	1 cut(s)	1754
SgrDI	CGTCGACG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	3 cut(s)	176, 563, 1583
SmlI	CTYRAG	1 cut(s)	913
SmoI	CTYRAG	1 cut(s)	913
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	6 cut(s)	905, 1147, 1225, 1243, 1291, 1813
SsiI	CCGC	9 cut(s)	68, 76, 95, 107, 198, 287, 502, 726, 1442
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	4 cut(s)	588, 1095, 1334, 1793
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	6 cut(s)	163, 358, 374, 673, 1191, 1427
TaiI	ACGT	5 cut(s)	115, 180, 311, 453, 886
TaqI	TCGA	4 cut(s)	89, 1156, 1707, 1754
TasI	AATT	6 cut(s)	905, 1147, 1225, 1243, 1291, 1813
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	2 cut(s)	97, 200
TfiI	GAWTC	2 cut(s)	58, 1751
Tru1I	TTAA	4 cut(s)	102, 411, 783, 921
Tru9I	TTAA	4 cut(s)	102, 411, 783, 921
TscAI	CASTG	5 cut(s)	57, 361, 991, 1488, 1558
TseFI	GTSAC	4 cut(s)	256, 374, 487, 1847
TseI	GCWGC	8 cut(s)	97, 746, 754, 1198, 1506, 1529, 1532, 1769
Tsp45I	GTSAC	4 cut(s)	256, 374, 487, 1847
TspDTI	ATGAA	9 cut(s)	71, 427, 584, 918, 1155, 1364, 1651, 1701, 1820
TspGWI	ACGGA	4 cut(s)	75, 153, 181, 789
TspRI	CASTG	5 cut(s)	57, 361, 991, 1488, 1558
Tth111I	GACNNNGTC	1 cut(s)	179
VneI	GTGCAC	2 cut(s)	359, 1613
VpaK11BI	GGWCC	1 cut(s)	323
VspI	ATTAAT	1 cut(s)	411
XagI	CCTNNNNNAGG	1 cut(s)	1391
XapI	RAATTY	4 cut(s)	905, 1225, 1243, 1813
XceI	RCATGY	1 cut(s)	1208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1304
XmiI	GTMKAC	1 cut(s)	89
XspI	CTAG	4 cut(s)	588, 1095, 1334, 1793
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.