NAD(P)H-binding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1208 |
| AccB1I | GGYRCC | 1 cut(s) | 128 |
| AccI | GTMKAC | 1 cut(s) | 1159 |
| AciI | CCGC | 3 cut(s) | 416, 719, 1536 |
| AclI | AACGTT | 1 cut(s) | 1332 |
| AclWI | GGATC | 3 cut(s) | 1119, 1817, 1830 |
| AcsI | RAATTY | 4 cut(s) | 84, 171, 850, 1731 |
| AfaI | GTAC | 7 cut(s) | 673, 689, 836, 985, 1254, 1470, 1920 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 746, 1195 |
| AflII | CTTAAG | 1 cut(s) | 562 |
| AflIII | ACRYGT | 1 cut(s) | 1471 |
| AgeI | ACCGGT | 1 cut(s) | 530 |
| AhlI | ACTAGT | 1 cut(s) | 676 |
| AjnI | CCWGG | 3 cut(s) | 777, 1460, 1507 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 352, 384, 1541, 1573 |
| AleI | CACNNNNGTG | 1 cut(s) | 1628 |
| AluBI | AGCT | 6 cut(s) | 288, 356, 1106, 1138, 1348, 1414 |
| AluI | AGCT | 6 cut(s) | 288, 356, 1106, 1138, 1348, 1414 |
| Alw21I | GWGCWC | 2 cut(s) | 242, 1294 |
| Alw26I | GTCTC | 3 cut(s) | 159, 648, 1683 |
| AlwI | GGATC | 3 cut(s) | 1119, 1817, 1830 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 235, 356 |
| Ama87I | CYCGRG | 1 cut(s) | 1324 |
| AoxI | GGCC | 4 cut(s) | 628, 1402, 1505, 1634 |
| ApeKI | GCWGC | 2 cut(s) | 1345, 1742 |
| ApoI | RAATTY | 4 cut(s) | 84, 171, 850, 1731 |
| AseI | ATTAAT | 2 cut(s) | 135, 714 |
| AsiGI | ACCGGT | 1 cut(s) | 530 |
| AspS9I | GGNCC | 4 cut(s) | 629, 737, 1022, 1403 |
| AsuHPI | GGTGA | 8 cut(s) | 29, 180, 462, 761, 810, 1022, 1163, 1483 |
| AsuII | TTCGAA | 1 cut(s) | 912 |
| AvaI | CYCGRG | 1 cut(s) | 1324 |
| AvaII | GGWCC | 2 cut(s) | 737, 1022 |
| BamHI | GGATCC | 1 cut(s) | 1822 |
| BanI | GGYRCC | 1 cut(s) | 128 |
| Bbv12I | GWGCWC | 2 cut(s) | 242, 1294 |
| BbvCI | CCTCAGC | 1 cut(s) | 1107 |
| BbvI | GCAGC | 2 cut(s) | 1357, 1729 |
| BccI | CCATC | 7 cut(s) | 39, 166, 958, 1121, 1148, 1367, 1874 |
| BceAI | ACGGC | 1 cut(s) | 1173 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1640, 1674 |
| BciT130I | CCWGG | 3 cut(s) | 779, 1462, 1509 |
| BciVI | GTATCC | 1 cut(s) | 1192 |
| BclI | TGATCA | 2 cut(s) | 855, 1681 |
| BcoDI | GTCTC | 3 cut(s) | 159, 648, 1683 |
| BcuI | ACTAGT | 1 cut(s) | 676 |
| BfaI | CTAG | 5 cut(s) | 381, 474, 515, 677, 1077 |
| BfmI | CTRYAG | 1 cut(s) | 1482 |
| BfrI | CTTAAG | 1 cut(s) | 562 |
| BfuAI | ACCTGC | 1 cut(s) | 1208 |
| BfuI | GTATCC | 1 cut(s) | 1192 |
| BglII | AGATCT | 1 cut(s) | 1669 |
| BisI | GCNGC | 2 cut(s) | 1346, 1743 |
| BlsI | GCNGC | 2 cut(s) | 1347, 1744 |
| BmcAI | AGTACT | 1 cut(s) | 689 |
| Bme1390I | CCNGG | 3 cut(s) | 779, 1462, 1509 |
| Bme18I | GGWCC | 2 cut(s) | 737, 1022 |
| BmeT110I | CYCGRG | 1 cut(s) | 1324 |
| BmgT120I | GGNCC | 4 cut(s) | 629, 737, 1022, 1403 |
| BmiI | GGNNCC | 3 cut(s) | 130, 1656, 1824 |
| BmrFI | CCNGG | 3 cut(s) | 779, 1462, 1509 |
| BmsI | GCATC | 1 cut(s) | 1297 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1100, 1132, 1656, 1688 |
| BpmI | CTGGAG | 1 cut(s) | 543 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1107 |
| Bpu14I | TTCGAA | 1 cut(s) | 912 |
| BsaBI | GATNNNNATC | 1 cut(s) | 343 |
| BsaJI | CCNNGG | 3 cut(s) | 778, 1460, 1650 |
| BsaWI | WCCGGW | 1 cut(s) | 530 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 746, 1195 |
| Bse118I | RCCGGY | 1 cut(s) | 530 |
| Bse1I | ACTGG | 5 cut(s) | 581, 1033, 1240, 1771, 1922 |
| Bse8I | GATNNNNATC | 1 cut(s) | 343 |
| BseBI | CCWGG | 3 cut(s) | 779, 1462, 1509 |
| BseDI | CCNNGG | 3 cut(s) | 778, 1460, 1650 |
| BseGI | GGATG | 2 cut(s) | 223, 849 |
| BseJI | GATNNNNATC | 1 cut(s) | 343 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 746, 1195 |
| BseMII | CTCAG | 6 cut(s) | 181, 242, 675, 1098, 1491, 1833 |
| BseNI | ACTGG | 5 cut(s) | 581, 1033, 1240, 1771, 1922 |
| BseRI | GAGGAG | 3 cut(s) | 718, 1667, 1733 |
| BseXI | GCAGC | 2 cut(s) | 1357, 1729 |
| BshFI | GGCC | 4 cut(s) | 630, 1404, 1507, 1636 |
| BshNI | GGYRCC | 1 cut(s) | 128 |
| BshTI | ACCGGT | 1 cut(s) | 530 |
| BsiHKAI | GWGCWC | 2 cut(s) | 242, 1294 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1324 |
| BsiSI | CCGG | 3 cut(s) | 462, 531, 1662 |
| BslFI | GGGAC | 2 cut(s) | 130, 386 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 746, 1195 |
| BsmAI | GTCTC | 3 cut(s) | 159, 648, 1683 |
| BsmFI | GGGAC | 2 cut(s) | 130, 386 |
| BsnI | GGCC | 4 cut(s) | 630, 1404, 1507, 1636 |
| BsoBI | CYCGRG | 1 cut(s) | 1324 |
| Bsp119I | TTCGAA | 1 cut(s) | 912 |
| Bsp1286I | GDGCHC | 2 cut(s) | 242, 1294 |
| Bsp1407I | TGTACA | 1 cut(s) | 1468 |
| Bsp143I | GATC | 5 cut(s) | 855, 1111, 1669, 1681, 1822 |
| BspACI | CCGC | 3 cut(s) | 416, 719, 1536 |
| BspANI | GGCC | 4 cut(s) | 630, 1404, 1507, 1636 |
| BspCNI | CTCAG | 6 cut(s) | 180, 241, 676, 1099, 1492, 1834 |
| BspLI | GGNNCC | 3 cut(s) | 130, 1656, 1824 |
| BspMAI | CTGCAG | 1 cut(s) | 1486 |
| BspMI | ACCTGC | 1 cut(s) | 1208 |
| BspPI | GGATC | 3 cut(s) | 1119, 1817, 1830 |
| BspT104I | TTCGAA | 1 cut(s) | 912 |
| BspT107I | GGYRCC | 1 cut(s) | 128 |
| BspTI | CTTAAG | 1 cut(s) | 562 |
| BsrFI | RCCGGY | 1 cut(s) | 530 |
| BsrGI | TGTACA | 1 cut(s) | 1468 |
| BsrI | ACTGG | 5 cut(s) | 581, 1033, 1240, 1771, 1922 |
| BssAI | RCCGGY | 1 cut(s) | 530 |
| BssECI | CCNNGG | 3 cut(s) | 778, 1460, 1650 |
| BssMI | GATC | 5 cut(s) | 855, 1111, 1669, 1681, 1822 |
| Bst2UI | CCWGG | 3 cut(s) | 779, 1462, 1509 |
| Bst4CI | ACNGT | 7 cut(s) | 1007, 1204, 1231, 1252, 1300, 1317, 1819 |
| Bst6I | CTCTTC | 1 cut(s) | 69 |
| BstAFI | CTTAAG | 1 cut(s) | 562 |
| BstAUI | TGTACA | 1 cut(s) | 1468 |
| BstBI | TTCGAA | 1 cut(s) | 912 |
| BstC8I | GCNNGC | 2 cut(s) | 1659, 1808 |
| BstDEI | CTNAG | 9 cut(s) | 167, 228, 429, 663, 684, 1107, 1500, 1520, 1842 |
| BstF5I | GGATG | 2 cut(s) | 223, 849 |
| BstKTI | GATC | 5 cut(s) | 858, 1114, 1672, 1684, 1825 |
| BstMAI | GTCTC | 3 cut(s) | 159, 648, 1683 |
| BstMBI | GATC | 5 cut(s) | 855, 1111, 1669, 1681, 1822 |
| BstNI | CCWGG | 3 cut(s) | 779, 1462, 1509 |
| BstNSI | RCATGY | 1 cut(s) | 1475 |
| BstSCI | CCNGG | 3 cut(s) | 777, 1460, 1507 |
| BstSFI | CTRYAG | 1 cut(s) | 1482 |
| BstV1I | GCAGC | 2 cut(s) | 1357, 1729 |
| BstX2I | RGATCY | 3 cut(s) | 1111, 1669, 1822 |
| BstYI | RGATCY | 3 cut(s) | 1111, 1669, 1822 |
| BsuI | GTATCC | 1 cut(s) | 1192 |
| BsuRI | GGCC | 4 cut(s) | 630, 1404, 1507, 1636 |
| BtsCI | GGATG | 2 cut(s) | 223, 849 |
| BtsI | GCAGTG | 1 cut(s) | 1053 |
| BtsIMutI | CAGTG | 6 cut(s) | 306, 1053, 1227, 1247, 1824, 1929 |
| BveI | ACCTGC | 1 cut(s) | 1208 |
| Cac8I | GCNNGC | 2 cut(s) | 1659, 1808 |
| CaiI | CAGNNNCTG | 2 cut(s) | 235, 356 |
| Cfr10I | RCCGGY | 1 cut(s) | 530 |
| Cfr13I | GGNCC | 4 cut(s) | 629, 737, 1022, 1403 |
| CseI | GACGC | 2 cut(s) | 865, 1170 |
| Csp6I | GTAC | 7 cut(s) | 672, 688, 835, 984, 1253, 1469, 1919 |
| CspAI | ACCGGT | 1 cut(s) | 530 |
| CviAII | CATG | 2 cut(s) | 1351, 1472 |
| CviQI | GTAC | 7 cut(s) | 672, 688, 835, 984, 1253, 1469, 1919 |
| DdeI | CTNAG | 9 cut(s) | 167, 228, 429, 663, 684, 1107, 1500, 1520, 1842 |
| DpnI | GATC | 5 cut(s) | 857, 1113, 1671, 1683, 1824 |
| DpnII | GATC | 5 cut(s) | 855, 1111, 1669, 1681, 1822 |
| DraI | TTTAAA | 3 cut(s) | 211, 1039, 1867 |
| Eam1104I | CTCTTC | 1 cut(s) | 69 |
| EarI | CTCTTC | 1 cut(s) | 69 |
| Eco147I | AGGCCT | 2 cut(s) | 1507, 1636 |
| Eco32I | GATATC | 1 cut(s) | 637 |
| Eco47I | GGWCC | 2 cut(s) | 737, 1022 |
| Eco88I | CYCGRG | 1 cut(s) | 1324 |
| EcoRI | GAATTC | 2 cut(s) | 84, 171 |
| EcoRII | CCWGG | 3 cut(s) | 777, 1460, 1507 |
| EcoRV | GATATC | 1 cut(s) | 637 |
| FaeI | CATG | 2 cut(s) | 1354, 1475 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1886, 1918 |
| FaqI | GGGAC | 2 cut(s) | 130, 386 |
| FatI | CATG | 2 cut(s) | 1350, 1471 |
| FauI | CCCGC | 1 cut(s) | 1543 |
| FauNDI | CATATG | 1 cut(s) | 1123 |
| FbaI | TGATCA | 2 cut(s) | 855, 1681 |
| FblI | GTMKAC | 1 cut(s) | 1159 |
| Fnu4HI | GCNGC | 2 cut(s) | 1346, 1743 |
| FokI | GGATG | 2 cut(s) | 210, 856 |
| Fsp4HI | GCNGC | 2 cut(s) | 1346, 1743 |
| FspBI | CTAG | 5 cut(s) | 381, 474, 515, 677, 1077 |
| GluI | GCNGC | 2 cut(s) | 1346, 1743 |
| GsuI | CTGGAG | 1 cut(s) | 543 |
| HaeIII | GGCC | 4 cut(s) | 630, 1404, 1507, 1636 |
| HapII | CCGG | 3 cut(s) | 462, 531, 1662 |
| HgaI | GACGC | 2 cut(s) | 865, 1170 |
| Hin1II | CATG | 2 cut(s) | 1354, 1475 |
| HincII | GTYRAC | 2 cut(s) | 556, 1160 |
| HindII | GTYRAC | 2 cut(s) | 556, 1160 |
| HinfI | GANTC | 8 cut(s) | 77, 202, 384, 783, 815, 909, 1093, 1488 |
| HpaII | CCGG | 3 cut(s) | 462, 531, 1662 |
| HphI | GGTGA | 8 cut(s) | 29, 180, 462, 761, 810, 1022, 1163, 1483 |
| Hpy166II | GTNNAC | 7 cut(s) | 479, 556, 674, 1022, 1160, 1526, 1861 |
| Hpy188I | TCNGA | 5 cut(s) | 170, 881, 993, 1085, 1306 |
| Hpy188III | TCNNGA | 8 cut(s) | 81, 176, 388, 683, 758, 1713, 1826, 1841 |
| Hpy8I | GTNNAC | 7 cut(s) | 479, 556, 674, 1022, 1160, 1526, 1861 |
| Hpy99I | CGWCG | 2 cut(s) | 881, 1164 |
| HpyAV | CCTTC | 6 cut(s) | 540, 740, 908, 1394, 1579, 1840 |
| HpyCH4III | ACNGT | 7 cut(s) | 1007, 1204, 1231, 1252, 1300, 1317, 1819 |
| HpyCH4IV | ACGT | 2 cut(s) | 329, 1332 |
| HpyCH4V | TGCA | 7 cut(s) | 1058, 1121, 1310, 1345, 1484, 1643, 1763 |
| HpyF3I | CTNAG | 9 cut(s) | 167, 228, 429, 663, 684, 1107, 1500, 1520, 1842 |
| HpySE526I | ACGT | 2 cut(s) | 329, 1332 |
| Hsp92II | CATG | 2 cut(s) | 1354, 1475 |
| Ksp22I | TGATCA | 2 cut(s) | 855, 1681 |
| Kzo9I | GATC | 5 cut(s) | 855, 1111, 1669, 1681, 1822 |
| LmnI | GCTCC | 5 cut(s) | 524, 1135, 1419, 1654, 1664 |
| Lsp1109I | GCAGC | 2 cut(s) | 1357, 1729 |
| LweI | GCATC | 1 cut(s) | 1297 |
| MaeI | CTAG | 5 cut(s) | 381, 474, 515, 677, 1077 |
| MaeII | ACGT | 2 cut(s) | 329, 1332 |
| MaeIII | GTNAC | 3 cut(s) | 749, 1208, 1489 |
| MalI | GATC | 5 cut(s) | 857, 1113, 1671, 1683, 1824 |
| MboI | GATC | 5 cut(s) | 855, 1111, 1669, 1681, 1822 |
| MboII | GAAGA | 6 cut(s) | 86, 254, 348, 397, 580, 1260 |
| MfeI | CAATTG | 1 cut(s) | 1626 |
| MflI | RGATCY | 3 cut(s) | 1111, 1669, 1822 |
| MhlI | GDGCHC | 2 cut(s) | 242, 1294 |
| MlyI | GAGTC | 2 cut(s) | 86, 1497 |
| MmeI | TCCRAC | 4 cut(s) | 119, 631, 859, 1213 |
| MslI | CAYNNNNRTG | 2 cut(s) | 842, 1628 |
| MspA1I | CMGCKG | 2 cut(s) | 1106, 1538 |
| MspCI | CTTAAG | 1 cut(s) | 562 |
| MspI | CCGG | 3 cut(s) | 462, 531, 1662 |
| MspR9I | CCNGG | 3 cut(s) | 779, 1462, 1509 |
| MunI | CAATTG | 1 cut(s) | 1626 |
| MvaI | CCWGG | 3 cut(s) | 779, 1462, 1509 |
| NdeI | CATATG | 1 cut(s) | 1123 |
| NdeII | GATC | 5 cut(s) | 855, 1111, 1669, 1681, 1822 |
| NlaIII | CATG | 2 cut(s) | 1354, 1475 |
| NlaIV | GGNNCC | 3 cut(s) | 130, 1656, 1824 |
| NmuCI | GTSAC | 2 cut(s) | 749, 1489 |
| NspI | RCATGY | 1 cut(s) | 1475 |
| NspV | TTCGAA | 1 cut(s) | 912 |
| OliI | CACNNNNGTG | 1 cut(s) | 1628 |
| PceI | AGGCCT | 2 cut(s) | 1507, 1636 |
| PciI | ACATGT | 1 cut(s) | 1471 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1186 |
| PfeI | GAWTC | 6 cut(s) | 202, 384, 783, 815, 909, 1093 |
| PinAI | ACCGGT | 1 cut(s) | 530 |
| PkrI | GCNGC | 2 cut(s) | 1347, 1744 |
| PleI | GAGTC | 2 cut(s) | 85, 1496 |
| PpsI | GAGTC | 2 cut(s) | 85, 1496 |
| PscI | ACATGT | 1 cut(s) | 1471 |
| PshBI | ATTAAT | 2 cut(s) | 135, 714 |
| Psp1406I | AACGTT | 1 cut(s) | 1332 |
| Psp6I | CCWGG | 3 cut(s) | 777, 1460, 1507 |
| PspGI | CCWGG | 3 cut(s) | 777, 1460, 1507 |
| PspN4I | GGNNCC | 3 cut(s) | 130, 1656, 1824 |
| PspPI | GGNCC | 4 cut(s) | 629, 737, 1022, 1403 |
| PstI | CTGCAG | 1 cut(s) | 1486 |
| PstNI | CAGNNNCTG | 2 cut(s) | 235, 356 |
| PsuI | RGATCY | 3 cut(s) | 1111, 1669, 1822 |
| PvuII | CAGCTG | 1 cut(s) | 1106 |
| RsaI | GTAC | 7 cut(s) | 673, 689, 836, 985, 1254, 1470, 1920 |
| RsaNI | GTAC | 7 cut(s) | 672, 688, 835, 984, 1253, 1469, 1919 |
| RseI | CAYNNNNRTG | 2 cut(s) | 842, 1628 |
| SalI | GTCGAC | 1 cut(s) | 1158 |
| SatI | GCNGC | 2 cut(s) | 1346, 1743 |
| Sau3AI | GATC | 5 cut(s) | 855, 1111, 1669, 1681, 1822 |
| Sau96I | GGNCC | 4 cut(s) | 629, 737, 1022, 1403 |
| ScaI | AGTACT | 1 cut(s) | 689 |
| SchI | GAGTC | 2 cut(s) | 86, 1497 |
| ScrFI | CCNGG | 3 cut(s) | 779, 1462, 1509 |
| SduI | GDGCHC | 2 cut(s) | 242, 1294 |
| SfaNI | GCATC | 1 cut(s) | 1297 |
| SfcI | CTRYAG | 1 cut(s) | 1482 |
| SfuI | TTCGAA | 1 cut(s) | 912 |
| SinI | GGWCC | 2 cut(s) | 737, 1022 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 842, 1628 |
| SmlI | CTYRAG | 1 cut(s) | 562 |
| SmoI | CTYRAG | 1 cut(s) | 562 |
| SpeI | ACTAGT | 1 cut(s) | 676 |
| SseBI | AGGCCT | 2 cut(s) | 1507, 1636 |
| SsiI | CCGC | 3 cut(s) | 416, 719, 1536 |
| SspI | AATATT | 1 cut(s) | 1284 |
| SspMI | CTAG | 5 cut(s) | 381, 474, 515, 677, 1077 |
| StuI | AGGCCT | 2 cut(s) | 1507, 1636 |
| StyD4I | CCNGG | 3 cut(s) | 777, 1460, 1507 |
| TaaI | ACNGT | 7 cut(s) | 1007, 1204, 1231, 1252, 1300, 1317, 1819 |
| TaiI | ACGT | 2 cut(s) | 332, 1335 |
| TaqI | TCGA | 6 cut(s) | 544, 586, 639, 912, 1159, 1288 |
| TaqII | GACCGA | 1 cut(s) | 1014 |
| TatI | WGTACW | 5 cut(s) | 671, 687, 834, 983, 1468 |
| TfiI | GAWTC | 6 cut(s) | 202, 384, 783, 815, 909, 1093 |
| TscAI | CASTG | 6 cut(s) | 313, 1060, 1234, 1247, 1824, 1929 |
| TseFI | GTSAC | 2 cut(s) | 749, 1489 |
| TseI | GCWGC | 2 cut(s) | 1345, 1742 |
| Tsp45I | GTSAC | 2 cut(s) | 749, 1489 |
| TspDTI | ATGAA | 3 cut(s) | 174, 618, 860 |
| TspRI | CASTG | 6 cut(s) | 313, 1060, 1234, 1247, 1824, 1929 |
| Vha464I | CTTAAG | 1 cut(s) | 562 |
| VpaK11BI | GGWCC | 2 cut(s) | 737, 1022 |
| VspI | ATTAAT | 2 cut(s) | 135, 714 |
| XapI | RAATTY | 4 cut(s) | 84, 171, 850, 1731 |
| XceI | RCATGY | 1 cut(s) | 1475 |
| XmiI | GTMKAC | 1 cut(s) | 1159 |
| XspI | CTAG | 5 cut(s) | 381, 474, 515, 677, 1077 |
| ZrmI | AGTACT | 1 cut(s) | 689 |