Rroxscaffold_2G00134770

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000908
Physical Location & Seq
Reverse (-)
72303477 .. 72308684
5208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134770.1

Sequence Viewer

Length: 402 bp
ATGGAAAGTTTCGTGCGTCTTGGTGATGCTCAAAGTGTGGAGTACGTTGGGATGAAAAATTTGATTAATGTTCTAAAACAAAGTGTTGGACTTCAAAATGGAAAGCTACTATTTGGATATGAAGGTAATAATTATAGGGAATTGACTTGGGGAGCTTTAGATGATGTTGTGATGGGTGGAGTGAGTGAAAGTACATTTCTGATCGACCCAAATGGCAGTGAAAATGGTGGACCAACTGGACTTTTTAAAGGTCTGTTCTTTAATCTATCAACTCCCGAGGATCTCTCTGCATATGATGGTATAGAGCTGCGCCTTAAAGGTGATGGTCGTCGTTATAAACTAATTCTTCGGACAAGTAGTGATTGGGATACTGTTGGTTACACGAGAGCTTTGACACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CIA30 NAD_binding_10

Protein Analysis

133

Amino Acids

14.64

Weight (kDa)

4.78

Isoelectric Point (pI)

26.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 48 - 131 8.9e-14 Complex I intermediate-associated protein 30 (CIA30)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 2 cut(s) 44, 193
AgsI TTSAA 1 cut(s) 95
AluBI AGCT 4 cut(s) 106, 155, 307, 389
AluI AGCT 4 cut(s) 106, 155, 307, 389
AlwI GGATC 1 cut(s) 288
Ama87I CYCGRG 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 1 cut(s) 58
AseI ATTAAT 1 cut(s) 66
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 35, 332
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 230
BauI CACGAG 1 cut(s) 382
BbvI GCAGC 1 cut(s) 294
BccI CCATC 3 cut(s) 166, 290, 317
BciVI GTATCC 1 cut(s) 361
BfuI GTATCC 1 cut(s) 361
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 230
BmsI GCATC 1 cut(s) 16
BplI GAGNNNNNCTC 2 cut(s) 269, 301
BsaJI CCNNGG 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 275
Bsp143I GATC 2 cut(s) 201, 280
BspPI GGATC 1 cut(s) 288
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 201, 280
BssSI CACGAG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 382
Bst4CI ACNGT 2 cut(s) 373, 399
BstF5I GGATG 1 cut(s) 57
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 2 cut(s) 204, 283
BstMBI GATC 2 cut(s) 201, 280
BstV1I GCAGC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuI GTATCC 1 cut(s) 361
BtsCI GGATG 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 230
CseI GACGC 1 cut(s) 5
Csp6I GTAC 2 cut(s) 43, 192
CviJI RGCY 4 cut(s) 106, 155, 307, 389
CviKI_1 RGCY 4 cut(s) 106, 155, 307, 389
CviQI GTAC 2 cut(s) 43, 192
DpnI GATC 2 cut(s) 203, 282
DpnII GATC 2 cut(s) 201, 280
DraI TTTAAA 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 275
FaiI YATR 6 cut(s) 120, 135, 292, 294, 302, 336
FauNDI CATATG 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 308
GlaI GCGC 1 cut(s) 311
GluI GCNGC 1 cut(s) 308
HgaI GACGC 1 cut(s) 5
HhaI GCGC 1 cut(s) 312
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HphI GGTGA 2 cut(s) 35, 332
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 201, 351
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 1 cut(s) 230
Hpy99I CGWCG 1 cut(s) 333
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 2 cut(s) 373, 399
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 290
HpySE526I ACGT 1 cut(s) 45
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 201, 280
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 1 cut(s) 222
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 16
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 377
MalI GATC 2 cut(s) 203, 282
MboI GATC 2 cut(s) 201, 280
MboII GAAGA 1 cut(s) 338
MflI RGATCY 1 cut(s) 280
MluCI AATT 4 cut(s) 58, 130, 140, 342
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 1 cut(s) 271
MseI TTAA 4 cut(s) 66, 246, 261, 315
NdeI CATATG 1 cut(s) 292
NdeII GATC 2 cut(s) 201, 280
PkrI GCNGC 1 cut(s) 309
PshBI ATTAAT 1 cut(s) 66
PsiI TTATAA 1 cut(s) 336
PspPI GGNCC 1 cut(s) 230
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 2 cut(s) 44, 193
RsaNI GTAC 2 cut(s) 43, 192
SaqAI TTAA 4 cut(s) 66, 246, 261, 315
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 2 cut(s) 201, 280
Sau96I GGNCC 1 cut(s) 230
SetI ASST 8 cut(s) 48, 108, 127, 157, 253, 309, 322, 391
SfaNI GCATC 1 cut(s) 16
SgeI CNNG 9 cut(s) 25, 32, 159, 249, 287, 289, 366, 394, 396
SinI GGWCC 1 cut(s) 230
Sse9I AATT 4 cut(s) 58, 130, 140, 342
TaaI ACNGT 2 cut(s) 373, 399
TaiI ACGT 1 cut(s) 48
TaqI TCGA 1 cut(s) 204
TasI AATT 4 cut(s) 58, 130, 140, 342
TatI WGTACW 1 cut(s) 191
Tru1I TTAA 4 cut(s) 66, 246, 261, 315
Tru9I TTAA 4 cut(s) 66, 246, 261, 315
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 307
TspDTI ATGAA 2 cut(s) 68, 135
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 230
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.