Rmu_sc0001886.1_g000003

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001886.1
OG0000908
Physical Location & Seq
Forward (+)
12816 .. 17856
5041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001886.1_g000003.1.cds

Sequence Viewer

Length: 1236 bp
atggcggcagaggaggagaaggatgctgaggtttcggaggaggggggatcgtcgcagccggtgaggctgtggaatctgaggaagaggaaggctccaattggctgtggtggcggcaaggggttgaaaattgaggagagaaagaatgagacaactagcacagagggaaagaaggacacttatgaactggagctaatgttggcagaagagagaaagctatggcagagagaaaagcaccagcttcaactaaaggacattgaattggagaatcagattgatatgaaaaagaatgagctggagcactgccgcaaggagctacaacatatgagagaaaatgagaagcttcacttagaaataattgaattgaaagaccagctccaaaccaaacaggcagtgaatgaggattttgaggcccagatgaatattaaagcacttgaacaaatgttgaaggagaaggagcatgagcttactgatctgtcaaaattttacaatgcactgattttcaaggagaggagcaataatgatgagctgcagggggcccctaaagagttaattgatgccgttaataacatttctgatatggtcttttacggcgtgcatttaatgcgtgccgtaatagttttcgcatctcttccttccacgtctcttcccaccgccaagtccccgttcactggatttgctccaccacagagtcaccggccgcgtacctcccaccaccaccacgacgttctgtgctcctctcatcgagatgttgtggatcgattgagctgcgaattaaagaacattgaagtggttgctgctctcagagattggggccaccggtttcagggtcttgaagtttctgaaacccttatggagaaaatcaagggagatttgcctgaaaaggtggagtacgttgggatgaaaaatttgattaatgctctaaaacaaagtgttggacttcaaaatggaaagctactatttggatatgaaggtaataattatagggaattgacttggggagctttagatgatgttgtgatgggtggagtgagtgaaagtacatttctgattgacccaaatgacagtgaaaatggtggaccaactggactttttaaaggagttgtttttactgcaaataacggtgggtttacaagcatcagaacaaagaatctatcaactcctgaggatctctctgcatatgatggtatagagctgcgccttaaaggtgatggtcgtcgttataaactaattctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CIA30 NAD_binding_10

Protein Analysis

411

Amino Acids

46.61

Weight (kDa)

5.66

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1221
AccII CGCG 1 cut(s) 700
AciI CCGC 5 cut(s) 5, 111, 304, 651, 698
AclWI GGATC 3 cut(s) 55, 762, 1173
AcoI YGGCCR 1 cut(s) 695
AcsI RAATTY 2 cut(s) 479, 904
AfaI GTAC 3 cut(s) 703, 890, 1039
AfiI CCNNNNNNNGG 2 cut(s) 668, 823
AgeI ACCGGT 1 cut(s) 816
AjiI CACGTC 1 cut(s) 639
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
Alw21I GWGCWC 2 cut(s) 300, 734
Alw26I GTCTC 2 cut(s) 140, 645
AlwI GGATC 3 cut(s) 55, 762, 1173
AoxI GGCC 4 cut(s) 408, 534, 695, 811
ApaI GGGCCC 1 cut(s) 538
ApeKI GCWGC 5 cut(s) 55, 526, 765, 794, 1192
ApoI RAATTY 2 cut(s) 479, 904
AseI ATTAAT 1 cut(s) 912
AsiGI ACCGGT 1 cut(s) 816
AspLEI GCGC 1 cut(s) 1197
AspS9I GGNCC 5 cut(s) 409, 534, 535, 811, 1076
AsuHPI GGTGA 3 cut(s) 73, 683, 1217
AvaII GGWCC 1 cut(s) 1076
AxyI CCTNAGG 1 cut(s) 1161
BaeGI GKGCMC 1 cut(s) 538
BanII GRGCYC 1 cut(s) 538
Bbv12I GWGCWC 2 cut(s) 300, 734
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 5 cut(s) 67, 513, 752, 781, 1179
BccI CCATC 3 cut(s) 1012, 1175, 1202
BceAI ACGGC 3 cut(s) 542, 593, 604
BcgI CGANNNNNNTGC 2 cut(s) 747, 781
BcoDI GTCTC 2 cut(s) 140, 645
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 527
BglI GCCNNNNNGGC 1 cut(s) 64
BisI GCNGC 9 cut(s) 6, 56, 112, 304, 527, 698, 766, 795, 1193
BlsI GCNGC 9 cut(s) 7, 57, 113, 305, 528, 699, 767, 796, 1194
Bme18I GGWCC 1 cut(s) 1076
BmgBI CACGTC 1 cut(s) 639
BmgT120I GGNCC 5 cut(s) 409, 534, 535, 811, 1076
BmiI GGNNCC 5 cut(s) 93, 535, 536, 537, 812
BmsI GCATC 4 cut(s) 13, 544, 632, 1143
BplI GAGNNNNNCTC 4 cut(s) 76, 108, 1154, 1186
BpmI CTGGAG 2 cut(s) 206, 314
Bpu10I CCTNAGC 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 757
BsaWI WCCGGW 1 cut(s) 816
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 668, 823
Bse118I RCCGGY 3 cut(s) 58, 693, 816
Bse1I ACTGG 3 cut(s) 189, 673, 1087
Bse21I CCTNAGG 1 cut(s) 1161
BseCI ATCGAT 1 cut(s) 757
BseGI GGATG 2 cut(s) 28, 903
BseLI CCNNNNNNNGG 2 cut(s) 668, 823
BseMII CTCAG 4 cut(s) 18, 68, 814, 1152
BseNI ACTGG 3 cut(s) 189, 673, 1087
BseRI GAGGAG 6 cut(s) 26, 29, 53, 146, 523, 724
BseSI GKGCMC 1 cut(s) 538
BseX3I CGGCCG 1 cut(s) 695
BseXI GCAGC 5 cut(s) 67, 513, 752, 781, 1179
Bsh1236I CGCG 1 cut(s) 700
Bsh1285I CGRYCG 1 cut(s) 698
BshFI GGCC 4 cut(s) 410, 536, 697, 813
BshTI ACCGGT 1 cut(s) 816
BshVI ATCGAT 1 cut(s) 757
BsiEI CGRYCG 1 cut(s) 698
BsiHKAI GWGCWC 2 cut(s) 300, 734
BsiSI CCGG 3 cut(s) 59, 694, 817
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 2 cut(s) 668, 823
BsmAI GTCTC 2 cut(s) 140, 645
BsmBI CGTCTC 1 cut(s) 645
BsmFI GGGAC 1 cut(s) 643
BsnI GGCC 4 cut(s) 410, 536, 697, 813
Bsp120I GGGCCC 1 cut(s) 534
Bsp1286I GDGCHC 3 cut(s) 300, 538, 734
Bsp143I GATC 4 cut(s) 47, 469, 754, 1165
BspACI CCGC 5 cut(s) 5, 111, 304, 651, 698
BspANI GGCC 4 cut(s) 410, 536, 697, 813
BspCNI CTCAG 4 cut(s) 19, 69, 813, 1153
BspDI ATCGAT 1 cut(s) 757
BspFNI CGCG 1 cut(s) 700
BspLI GGNNCC 5 cut(s) 93, 535, 536, 537, 812
BspMAI CTGCAG 1 cut(s) 531
BspPI GGATC 3 cut(s) 55, 762, 1173
BsrFI RCCGGY 3 cut(s) 58, 693, 816
BsrI ACTGG 3 cut(s) 189, 673, 1087
BssAI RCCGGY 3 cut(s) 58, 693, 816
BssMI GATC 4 cut(s) 47, 469, 754, 1165
Bst4CI ACNGT 2 cut(s) 1064, 1121
Bst6I CTCTTC 4 cut(s) 77, 198, 633, 648
BstAPI GCANNNNNTGC 1 cut(s) 601
BstC8I GCNNGC 2 cut(s) 593, 606
BstDEI CTNAG 5 cut(s) 27, 77, 346, 800, 1161
BstF5I GGATG 2 cut(s) 28, 903
BstFNI CGCG 1 cut(s) 700
BstHHI GCGC 1 cut(s) 1197
BstKTI GATC 4 cut(s) 50, 472, 757, 1168
BstMAI GTCTC 2 cut(s) 140, 645
BstMBI GATC 4 cut(s) 47, 469, 754, 1165
BstMCI CGRYCG 1 cut(s) 698
BstMWI GCNNNNNNNGC 3 cut(s) 64, 108, 601
BstSFI CTRYAG 1 cut(s) 527
BstSLI GKGCMC 1 cut(s) 538
BstUI CGCG 1 cut(s) 700
BstV1I GCAGC 5 cut(s) 67, 513, 752, 781, 1179
BstX2I RGATCY 1 cut(s) 1165
BstYI RGATCY 1 cut(s) 1165
BstZI CGGCCG 1 cut(s) 695
Bsu15I ATCGAT 1 cut(s) 757
Bsu36I CCTNAGG 1 cut(s) 1161
BsuRI GGCC 4 cut(s) 410, 536, 697, 813
BsuTUI ATCGAT 1 cut(s) 757
BtrI CACGTC 1 cut(s) 639
BtsCI GGATG 2 cut(s) 28, 903
BtsI GCAGTG 2 cut(s) 298, 396
BtsIMutI CAGTG 5 cut(s) 298, 396, 491, 666, 1069
Cac8I GCNNGC 2 cut(s) 593, 606
CfoI GCGC 1 cut(s) 1197
Cfr10I RCCGGY 3 cut(s) 58, 693, 816
Cfr13I GGNCC 5 cut(s) 409, 534, 535, 811, 1076
ClaI ATCGAT 1 cut(s) 757
Csp6I GTAC 3 cut(s) 702, 889, 1038
CspAI ACCGGT 1 cut(s) 816
CviAII CATG 1 cut(s) 458
CviQI GTAC 3 cut(s) 702, 889, 1038
DdeI CTNAG 5 cut(s) 27, 77, 346, 800, 1161
DpnI GATC 4 cut(s) 49, 471, 756, 1167
DpnII GATC 4 cut(s) 47, 469, 754, 1165
DraI TTTAAA 1 cut(s) 1093
EaeI YGGCCR 1 cut(s) 695
EagI CGGCCG 1 cut(s) 695
Eam1104I CTCTTC 4 cut(s) 77, 198, 633, 648
EarI CTCTTC 4 cut(s) 77, 198, 633, 648
EclXI CGGCCG 1 cut(s) 695
Eco24I GRGCYC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 1076
Eco52I CGGCCG 1 cut(s) 695
Eco81I CCTNAGG 1 cut(s) 1161
EcoO109I RGGNCCY 2 cut(s) 534, 535
EcoT38I GRGCYC 1 cut(s) 538
Esp3I CGTCTC 1 cut(s) 645
FaeI CATG 1 cut(s) 461
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 643
FatI CATG 1 cut(s) 457
FauNDI CATATG 2 cut(s) 321, 1177
Fnu4HI GCNGC 9 cut(s) 6, 56, 112, 304, 527, 698, 766, 795, 1193
FokI GGATG 2 cut(s) 35, 910
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 9 cut(s) 6, 56, 112, 304, 527, 698, 766, 795, 1193
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 1196
GluI GCNGC 9 cut(s) 6, 56, 112, 304, 527, 698, 766, 795, 1193
GsuI CTGGAG 2 cut(s) 206, 314
HaeIII GGCC 4 cut(s) 410, 536, 697, 813
HapII CCGG 3 cut(s) 59, 694, 817
HhaI GCGC 1 cut(s) 1197
Hin1II CATG 1 cut(s) 461
Hin6I GCGC 1 cut(s) 1195
HinP1I GCGC 1 cut(s) 1195
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 4 cut(s) 73, 265, 688, 1147
HpaII CCGG 3 cut(s) 59, 694, 817
HphI GGTGA 3 cut(s) 73, 683, 1217
Hpy166II GTNNAC 3 cut(s) 666, 1076, 1128
Hpy188I TCNGA 8 cut(s) 37, 78, 270, 574, 803, 841, 1047, 1139
Hpy188III TCNNGA 3 cut(s) 743, 830, 1160
Hpy8I GTNNAC 3 cut(s) 666, 1076, 1128
Hpy99I CGWCG 3 cut(s) 55, 725, 1218
HpyAV CCTTC 7 cut(s) 13, 82, 163, 439, 445, 642, 962
HpyCH4III ACNGT 2 cut(s) 1064, 1121
HpyCH4IV ACGT 3 cut(s) 638, 723, 891
HpyCH4V TGCA 5 cut(s) 491, 529, 595, 1112, 1175
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 108, 601
HpyF3I CTNAG 5 cut(s) 27, 77, 346, 800, 1161
HpySE526I ACGT 3 cut(s) 638, 723, 891
Hsp92II CATG 1 cut(s) 461
HspAI GCGC 1 cut(s) 1195
Kzo9I GATC 4 cut(s) 47, 469, 754, 1165
Lsp1109I GCAGC 5 cut(s) 67, 513, 752, 781, 1179
LweI GCATC 4 cut(s) 13, 544, 632, 1143
MaeI CTAG 1 cut(s) 153
MaeII ACGT 3 cut(s) 638, 723, 891
MaeIII GTNAC 1 cut(s) 689
MalI GATC 4 cut(s) 49, 471, 756, 1167
MboI GATC 4 cut(s) 47, 469, 754, 1165
MboII GAAGA 4 cut(s) 94, 215, 620, 635
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 1 cut(s) 1165
MhlI GDGCHC 3 cut(s) 300, 538, 734
MlyI GAGTC 1 cut(s) 697
MmeI TCCRAC 1 cut(s) 913
MseI TTAA 8 cut(s) 423, 548, 561, 599, 773, 912, 1092, 1200
MslI CAYNNNNRTG 2 cut(s) 744, 785
MspI CCGG 3 cut(s) 59, 694, 817
MunI CAATTG 1 cut(s) 96
MvnI CGCG 1 cut(s) 700
MwoI GCNNNNNNNGC 3 cut(s) 64, 108, 601
NdeI CATATG 2 cut(s) 321, 1177
NdeII GATC 4 cut(s) 47, 469, 754, 1165
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 5 cut(s) 93, 535, 536, 537, 812
NmuCI GTSAC 1 cut(s) 689
PfeI GAWTC 3 cut(s) 73, 265, 1147
PinAI ACCGGT 1 cut(s) 816
PkrI GCNGC 9 cut(s) 7, 57, 113, 305, 528, 699, 767, 796, 1194
PleI GAGTC 1 cut(s) 696
PpsI GAGTC 1 cut(s) 696
PshBI ATTAAT 1 cut(s) 912
PsiI TTATAA 1 cut(s) 1221
PspN4I GGNNCC 5 cut(s) 93, 535, 536, 537, 812
PspOMI GGGCCC 1 cut(s) 534
PspPI GGNCC 5 cut(s) 409, 534, 535, 811, 1076
PstI CTGCAG 1 cut(s) 531
PsuI RGATCY 1 cut(s) 1165
RsaI GTAC 3 cut(s) 703, 890, 1039
RsaNI GTAC 3 cut(s) 702, 889, 1038
RseI CAYNNNNRTG 2 cut(s) 744, 785
SaqAI TTAA 8 cut(s) 423, 548, 561, 599, 773, 912, 1092, 1200
SatI GCNGC 9 cut(s) 6, 56, 112, 304, 527, 698, 766, 795, 1193
Sau3AI GATC 4 cut(s) 47, 469, 754, 1165
Sau96I GGNCC 5 cut(s) 409, 534, 535, 811, 1076
SchI GAGTC 1 cut(s) 697
SduI GDGCHC 3 cut(s) 300, 538, 734
SfaNI GCATC 4 cut(s) 13, 544, 632, 1143
SfcI CTRYAG 1 cut(s) 527
SinI GGWCC 1 cut(s) 1076
SmiMI CAYNNNNRTG 2 cut(s) 744, 785
SsiI CCGC 5 cut(s) 5, 111, 304, 651, 698
SspI AATATT 1 cut(s) 421
SspMI CTAG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 1064, 1121
TaiI ACGT 3 cut(s) 641, 726, 894
TaqI TCGA 2 cut(s) 742, 757
TatI WGTACW 1 cut(s) 1037
TauI GCSGC 4 cut(s) 8, 114, 306, 700
TfiI GAWTC 3 cut(s) 73, 265, 1147
Tru1I TTAA 8 cut(s) 423, 548, 561, 599, 773, 912, 1092, 1200
Tru9I TTAA 8 cut(s) 423, 548, 561, 599, 773, 912, 1092, 1200
TscAI CASTG 5 cut(s) 305, 396, 498, 673, 1069
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 5 cut(s) 55, 526, 765, 794, 1192
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 5 cut(s) 195, 293, 431, 914, 981
TspRI CASTG 5 cut(s) 305, 396, 498, 673, 1069
VpaK11BI GGWCC 1 cut(s) 1076
VspI ATTAAT 1 cut(s) 912
XapI RAATTY 2 cut(s) 479, 904
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.