NAD(P)H-binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 170, 618 |
| Acc36I | ACCTGC | 1 cut(s) | 18 |
| AccI | GTMKAC | 1 cut(s) | 1251 |
| AciI | CCGC | 2 cut(s) | 161, 994 |
| AclWI | GGATC | 2 cut(s) | 570, 893 |
| AcsI | RAATTY | 4 cut(s) | 279, 857, 1065, 1161 |
| AfaI | GTAC | 3 cut(s) | 705, 921, 1350 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 431, 460, 1276 |
| AflIII | ACRYGT | 1 cut(s) | 922 |
| AgsI | TTSAA | 8 cut(s) | 190, 370, 818, 876, 1000, 1030, 1036, 1306 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 445 |
| AjnI | CCWGG | 3 cut(s) | 430, 911, 958 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 992, 1024 |
| AluBI | AGCT | 7 cut(s) | 8, 23, 86, 309, 589, 799, 865 |
| AluI | AGCT | 7 cut(s) | 8, 23, 86, 309, 589, 799, 865 |
| Alw21I | GWGCWC | 2 cut(s) | 100, 199 |
| Alw26I | GTCTC | 5 cut(s) | 36, 402, 453, 949, 1134 |
| Alw44I | GTGCAC | 1 cut(s) | 96 |
| AlwI | GGATC | 2 cut(s) | 570, 893 |
| Ama87I | CYCGRG | 1 cut(s) | 775 |
| AoxI | GGCC | 4 cut(s) | 463, 728, 947, 1085 |
| ApaLI | GTGCAC | 1 cut(s) | 96 |
| ApeKI | GCWGC | 3 cut(s) | 589, 796, 1172 |
| ApoI | RAATTY | 4 cut(s) | 279, 857, 1065, 1161 |
| AspLEI | GCGC | 2 cut(s) | 594, 763 |
| AspS9I | GGNCC | 1 cut(s) | 463 |
| AsuHPI | GGTGA | 2 cut(s) | 614, 653 |
| AsuII | TTCGAA | 1 cut(s) | 56 |
| AsuNHI | GCTAGC | 1 cut(s) | 23 |
| AvaI | CYCGRG | 1 cut(s) | 775 |
| AxyI | CCTNAGG | 1 cut(s) | 558 |
| BaeGI | GKGCMC | 1 cut(s) | 100 |
| Bbv12I | GWGCWC | 2 cut(s) | 100, 199 |
| BbvI | GCAGC | 3 cut(s) | 576, 808, 1159 |
| BccI | CCATC | 5 cut(s) | 113, 572, 599, 818, 1304 |
| BceAI | ACGGC | 2 cut(s) | 430, 722 |
| BciT130I | CCWGG | 3 cut(s) | 432, 913, 960 |
| BciVI | GTATCC | 1 cut(s) | 643 |
| BclI | TGATCA | 1 cut(s) | 175 |
| BcoDI | GTCTC | 5 cut(s) | 36, 402, 453, 949, 1134 |
| BfaI | CTAG | 1 cut(s) | 24 |
| BfmI | CTRYAG | 2 cut(s) | 794, 933 |
| BfuAI | ACCTGC | 1 cut(s) | 18 |
| BfuI | GTATCC | 1 cut(s) | 643 |
| BglII | AGATCT | 1 cut(s) | 1120 |
| BisI | GCNGC | 3 cut(s) | 590, 797, 1173 |
| BlsI | GCNGC | 3 cut(s) | 591, 798, 1174 |
| Bme1390I | CCNGG | 3 cut(s) | 432, 913, 960 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 445 |
| BmeT110I | CYCGRG | 1 cut(s) | 775 |
| BmgT120I | GGNCC | 1 cut(s) | 463 |
| BmiI | GGNNCC | 2 cut(s) | 436, 1107 |
| BmrFI | CCNGG | 3 cut(s) | 432, 913, 960 |
| BmrI | ACTGGG | 1 cut(s) | 863 |
| BmsI | GCATC | 4 cut(s) | 70, 121, 540, 748 |
| BmtI | GCTAGC | 1 cut(s) | 27 |
| BmuI | ACTGGG | 1 cut(s) | 863 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 551, 583, 1107, 1139 |
| BpmI | CTGGAG | 1 cut(s) | 1134 |
| Bpu14I | TTCGAA | 1 cut(s) | 56 |
| BsaAI | YACGTR | 1 cut(s) | 925 |
| BsaI | GGTCTC | 2 cut(s) | 36, 949 |
| BsaJI | CCNNGG | 4 cut(s) | 323, 459, 911, 1135 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 431, 460, 1276 |
| Bse1I | ACTGG | 4 cut(s) | 691, 869, 1201, 1352 |
| Bse21I | CCTNAGG | 1 cut(s) | 558 |
| BseBI | CCWGG | 3 cut(s) | 432, 913, 960 |
| BseDI | CCNNGG | 4 cut(s) | 323, 459, 911, 1135 |
| BseGI | GGATG | 2 cut(s) | 61, 1315 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 431, 460, 1276 |
| BseMII | CTCAG | 5 cut(s) | 489, 549, 942, 1092, 1263 |
| BseNI | ACTGG | 4 cut(s) | 691, 869, 1201, 1352 |
| BseRI | GAGGAG | 1 cut(s) | 1118 |
| BseSI | GKGCMC | 1 cut(s) | 100 |
| BseXI | GCAGC | 3 cut(s) | 576, 808, 1159 |
| BsgI | GTGCAG | 1 cut(s) | 33 |
| Bsh1285I | CGRYCG | 1 cut(s) | 493 |
| BshFI | GGCC | 4 cut(s) | 465, 730, 949, 1087 |
| BsiEI | CGRYCG | 1 cut(s) | 493 |
| BsiHKAI | GWGCWC | 2 cut(s) | 100, 199 |
| BsiHKCI | CYCGRG | 1 cut(s) | 775 |
| BslFI | GGGAC | 1 cut(s) | 156 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 431, 460, 1276 |
| BsmAI | GTCTC | 5 cut(s) | 36, 402, 453, 949, 1134 |
| BsmBI | CGTCTC | 1 cut(s) | 453 |
| BsmFI | GGGAC | 1 cut(s) | 156 |
| BsnI | GGCC | 4 cut(s) | 465, 730, 949, 1087 |
| Bso31I | GGTCTC | 2 cut(s) | 36, 949 |
| BsoBI | CYCGRG | 1 cut(s) | 775 |
| Bsp119I | TTCGAA | 1 cut(s) | 56 |
| Bsp1286I | GDGCHC | 2 cut(s) | 100, 199 |
| Bsp1407I | TGTACA | 1 cut(s) | 919 |
| Bsp143I | GATC | 5 cut(s) | 175, 562, 898, 967, 1120 |
| Bsp19I | CCATGG | 1 cut(s) | 459 |
| BspACI | CCGC | 2 cut(s) | 161, 994 |
| BspANI | GGCC | 4 cut(s) | 465, 730, 949, 1087 |
| BspCNI | CTCAG | 5 cut(s) | 488, 550, 943, 1093, 1264 |
| BspLI | GGNNCC | 2 cut(s) | 436, 1107 |
| BspMAI | CTGCAG | 2 cut(s) | 798, 937 |
| BspMI | ACCTGC | 1 cut(s) | 18 |
| BspOI | GCTAGC | 1 cut(s) | 27 |
| BspPI | GGATC | 2 cut(s) | 570, 893 |
| BspQI | GCTCTTC | 1 cut(s) | 299 |
| BspT104I | TTCGAA | 1 cut(s) | 56 |
| BspTNI | GGTCTC | 2 cut(s) | 36, 949 |
| BsrGI | TGTACA | 1 cut(s) | 919 |
| BsrI | ACTGG | 4 cut(s) | 691, 869, 1201, 1352 |
| BssECI | CCNNGG | 4 cut(s) | 323, 459, 911, 1135 |
| BssMI | GATC | 5 cut(s) | 175, 562, 898, 967, 1120 |
| BssT1I | CCWWGG | 3 cut(s) | 323, 459, 1135 |
| Bst2UI | CCWGG | 3 cut(s) | 432, 913, 960 |
| Bst4CI | ACNGT | 7 cut(s) | 518, 655, 682, 703, 751, 1153, 1249 |
| Bst6I | CTCTTC | 3 cut(s) | 260, 299, 491 |
| BstAUI | TGTACA | 1 cut(s) | 919 |
| BstBAI | YACGTR | 1 cut(s) | 925 |
| BstBI | TTCGAA | 1 cut(s) | 56 |
| BstC8I | GCNNGC | 5 cut(s) | 25, 84, 670, 1110, 1238 |
| BstDEI | CTNAG | 7 cut(s) | 475, 558, 951, 971, 1101, 1272, 1333 |
| BstDSI | CCRYGG | 1 cut(s) | 459 |
| BstF5I | GGATG | 2 cut(s) | 61, 1315 |
| BstHHI | GCGC | 2 cut(s) | 594, 763 |
| BstKTI | GATC | 5 cut(s) | 178, 565, 901, 970, 1123 |
| BstMAI | GTCTC | 5 cut(s) | 36, 402, 453, 949, 1134 |
| BstMBI | GATC | 5 cut(s) | 175, 562, 898, 967, 1120 |
| BstMCI | CGRYCG | 1 cut(s) | 493 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 20, 131 |
| BstNI | CCWGG | 3 cut(s) | 432, 913, 960 |
| BstSCI | CCNGG | 3 cut(s) | 430, 911, 958 |
| BstSFI | CTRYAG | 2 cut(s) | 794, 933 |
| BstSLI | GKGCMC | 1 cut(s) | 100 |
| BstV1I | GCAGC | 3 cut(s) | 576, 808, 1159 |
| BstX2I | RGATCY | 3 cut(s) | 562, 898, 1120 |
| BstYI | RGATCY | 3 cut(s) | 562, 898, 1120 |
| Bsu36I | CCTNAGG | 1 cut(s) | 558 |
| BsuI | GTATCC | 1 cut(s) | 643 |
| BsuRI | GGCC | 4 cut(s) | 465, 730, 949, 1087 |
| BtgI | CCRYGG | 1 cut(s) | 459 |
| BtsCI | GGATG | 2 cut(s) | 61, 1315 |
| BtsI | GCAGTG | 2 cut(s) | 504, 791 |
| BtsIMutI | CAGTG | 4 cut(s) | 504, 678, 698, 791 |
| BveI | ACCTGC | 1 cut(s) | 18 |
| Cac8I | GCNNGC | 5 cut(s) | 25, 84, 670, 1110, 1238 |
| CfoI | GCGC | 2 cut(s) | 594, 763 |
| Cfr13I | GGNCC | 1 cut(s) | 463 |
| Csp6I | GTAC | 3 cut(s) | 704, 920, 1349 |
| CviAII | CATG | 2 cut(s) | 301, 460 |
| CviQI | GTAC | 3 cut(s) | 704, 920, 1349 |
| DdeI | CTNAG | 7 cut(s) | 475, 558, 951, 971, 1101, 1272, 1333 |
| DpnI | GATC | 5 cut(s) | 177, 564, 900, 969, 1122 |
| DpnII | GATC | 5 cut(s) | 175, 562, 898, 967, 1120 |
| DraI | TTTAAA | 3 cut(s) | 73, 285, 1297 |
| DriI | GACNNNNNGTC | 1 cut(s) | 445 |
| Eam1104I | CTCTTC | 3 cut(s) | 260, 299, 491 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 445 |
| EarI | CTCTTC | 3 cut(s) | 260, 299, 491 |
| Eco130I | CCWWGG | 3 cut(s) | 323, 459, 1135 |
| Eco147I | AGGCCT | 2 cut(s) | 730, 1087 |
| Eco31I | GGTCTC | 2 cut(s) | 36, 949 |
| Eco81I | CCTNAGG | 1 cut(s) | 558 |
| Eco88I | CYCGRG | 1 cut(s) | 775 |
| EcoRI | GAATTC | 1 cut(s) | 1065 |
| EcoRII | CCWGG | 3 cut(s) | 430, 911, 958 |
| EcoT14I | CCWWGG | 3 cut(s) | 323, 459, 1135 |
| ErhI | CCWWGG | 3 cut(s) | 323, 459, 1135 |
| Esp3I | CGTCTC | 1 cut(s) | 453 |
| FaeI | CATG | 2 cut(s) | 304, 463 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 183, 215 |
| FaqI | GGGAC | 1 cut(s) | 156 |
| FatI | CATG | 2 cut(s) | 300, 459 |
| FauNDI | CATATG | 1 cut(s) | 574 |
| FbaI | TGATCA | 1 cut(s) | 175 |
| FblI | GTMKAC | 1 cut(s) | 1251 |
| Fnu4HI | GCNGC | 3 cut(s) | 590, 797, 1173 |
| FokI | GGATG | 2 cut(s) | 48, 1322 |
| Fsp4HI | GCNGC | 3 cut(s) | 590, 797, 1173 |
| FspBI | CTAG | 1 cut(s) | 24 |
| GlaI | GCGC | 2 cut(s) | 593, 762 |
| GluI | GCNGC | 3 cut(s) | 590, 797, 1173 |
| GsuI | CTGGAG | 1 cut(s) | 1134 |
| HaeIII | GGCC | 4 cut(s) | 465, 730, 949, 1087 |
| HhaI | GCGC | 2 cut(s) | 594, 763 |
| Hin1II | CATG | 2 cut(s) | 304, 463 |
| Hin6I | GCGC | 2 cut(s) | 592, 761 |
| HinP1I | GCGC | 2 cut(s) | 592, 761 |
| HinfI | GANTC | 2 cut(s) | 440, 544 |
| HphI | GGTGA | 2 cut(s) | 614, 653 |
| Hpy166II | GTNNAC | 6 cut(s) | 98, 525, 922, 977, 1252, 1291 |
| Hpy188I | TCNGA | 6 cut(s) | 108, 354, 536, 633, 757, 894 |
| Hpy188III | TCNNGA | 2 cut(s) | 1021, 1055 |
| Hpy8I | GTNNAC | 6 cut(s) | 98, 525, 922, 977, 1252, 1291 |
| Hpy99I | CGWCG | 1 cut(s) | 615 |
| HpyAV | CCTTC | 7 cut(s) | 63, 364, 481, 845, 1030, 1270, 1300 |
| HpyCH4III | ACNGT | 7 cut(s) | 518, 655, 682, 703, 751, 1153, 1249 |
| HpyCH4IV | ACGT | 1 cut(s) | 924 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 20, 131 |
| HpyF3I | CTNAG | 7 cut(s) | 475, 558, 951, 971, 1101, 1272, 1333 |
| HpySE526I | ACGT | 1 cut(s) | 924 |
| Hsp92II | CATG | 2 cut(s) | 304, 463 |
| HspAI | GCGC | 2 cut(s) | 592, 761 |
| Ksp22I | TGATCA | 1 cut(s) | 175 |
| Kzo9I | GATC | 5 cut(s) | 175, 562, 898, 967, 1120 |
| LguI | GCTCTTC | 1 cut(s) | 299 |
| LmnI | GCTCC | 4 cut(s) | 91, 870, 1105, 1115 |
| Lsp1109I | GCAGC | 3 cut(s) | 576, 808, 1159 |
| LweI | GCATC | 4 cut(s) | 70, 121, 540, 748 |
| MaeI | CTAG | 1 cut(s) | 24 |
| MaeII | ACGT | 1 cut(s) | 924 |
| MaeIII | GTNAC | 3 cut(s) | 659, 789, 940 |
| MalI | GATC | 5 cut(s) | 177, 564, 900, 969, 1122 |
| MboI | GATC | 5 cut(s) | 175, 562, 898, 967, 1120 |
| MboII | GAAGA | 5 cut(s) | 215, 247, 316, 478, 711 |
| MfeI | CAATTG | 1 cut(s) | 1077 |
| MflI | RGATCY | 3 cut(s) | 562, 898, 1120 |
| MhlI | GDGCHC | 2 cut(s) | 100, 199 |
| MlyI | GAGTC | 1 cut(s) | 434 |
| MseI | TTAA | 8 cut(s) | 72, 284, 597, 861, 1049, 1097, 1215, 1296 |
| MspR9I | CCNGG | 3 cut(s) | 432, 913, 960 |
| MunI | CAATTG | 1 cut(s) | 1077 |
| MvaI | CCWGG | 3 cut(s) | 432, 913, 960 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 20, 131 |
| NcoI | CCATGG | 1 cut(s) | 459 |
| NdeI | CATATG | 1 cut(s) | 574 |
| NdeII | GATC | 5 cut(s) | 175, 562, 898, 967, 1120 |
| NheI | GCTAGC | 1 cut(s) | 23 |
| NlaIII | CATG | 2 cut(s) | 304, 463 |
| NlaIV | GGNNCC | 2 cut(s) | 436, 1107 |
| NmeAIII | GCCGAG | 1 cut(s) | 925 |
| NmuCI | GTSAC | 1 cut(s) | 789 |
| NspV | TTCGAA | 1 cut(s) | 56 |
| PceI | AGGCCT | 2 cut(s) | 730, 1087 |
| PciSI | GCTCTTC | 1 cut(s) | 299 |
| PfeI | GAWTC | 1 cut(s) | 544 |
| PfoI | TCCNGGA | 1 cut(s) | 430 |
| PkrI | GCNGC | 3 cut(s) | 591, 798, 1174 |
| PleI | GAGTC | 1 cut(s) | 434 |
| PpsI | GAGTC | 1 cut(s) | 434 |
| Ppu21I | YACGTR | 1 cut(s) | 925 |
| PsiI | TTATAA | 2 cut(s) | 170, 618 |
| Psp6I | CCWGG | 3 cut(s) | 430, 911, 958 |
| PspGI | CCWGG | 3 cut(s) | 430, 911, 958 |
| PspN4I | GGNNCC | 2 cut(s) | 436, 1107 |
| PspPI | GGNCC | 1 cut(s) | 463 |
| PstI | CTGCAG | 2 cut(s) | 798, 937 |
| PsuI | RGATCY | 3 cut(s) | 562, 898, 1120 |
| RsaI | GTAC | 3 cut(s) | 705, 921, 1350 |
| RsaNI | GTAC | 3 cut(s) | 704, 920, 1349 |
| SapI | GCTCTTC | 1 cut(s) | 299 |
| SaqAI | TTAA | 8 cut(s) | 72, 284, 597, 861, 1049, 1097, 1215, 1296 |
| SatI | GCNGC | 3 cut(s) | 590, 797, 1173 |
| Sau3AI | GATC | 5 cut(s) | 175, 562, 898, 967, 1120 |
| Sau96I | GGNCC | 1 cut(s) | 463 |
| SchI | GAGTC | 1 cut(s) | 434 |
| ScrFI | CCNGG | 3 cut(s) | 432, 913, 960 |
| SduI | GDGCHC | 2 cut(s) | 100, 199 |
| SfaNI | GCATC | 4 cut(s) | 70, 121, 540, 748 |
| SfcI | CTRYAG | 2 cut(s) | 794, 933 |
| SfuI | TTCGAA | 1 cut(s) | 56 |
| SseBI | AGGCCT | 2 cut(s) | 730, 1087 |
| SsiI | CCGC | 2 cut(s) | 161, 994 |
| SspI | AATATT | 2 cut(s) | 114, 784 |
| SspMI | CTAG | 1 cut(s) | 24 |
| StuI | AGGCCT | 2 cut(s) | 730, 1087 |
| StyD4I | CCNGG | 3 cut(s) | 430, 911, 958 |
| StyI | CCWWGG | 3 cut(s) | 323, 459, 1135 |
| TaaI | ACNGT | 7 cut(s) | 518, 655, 682, 703, 751, 1153, 1249 |
| TaiI | ACGT | 1 cut(s) | 927 |
| TaqI | TCGA | 2 cut(s) | 56, 489 |
| TaqII | GACCGA | 1 cut(s) | 507 |
| TatI | WGTACW | 1 cut(s) | 919 |
| TfiI | GAWTC | 1 cut(s) | 544 |
| Tru1I | TTAA | 8 cut(s) | 72, 284, 597, 861, 1049, 1097, 1215, 1296 |
| Tru9I | TTAA | 8 cut(s) | 72, 284, 597, 861, 1049, 1097, 1215, 1296 |
| TscAI | CASTG | 4 cut(s) | 511, 685, 698, 798 |
| TseFI | GTSAC | 1 cut(s) | 789 |
| TseI | GCWGC | 3 cut(s) | 589, 796, 1172 |
| Tsp45I | GTSAC | 1 cut(s) | 789 |
| TspDTI | ATGAA | 4 cut(s) | 225, 229, 317, 360 |
| TspRI | CASTG | 4 cut(s) | 511, 685, 698, 798 |
| VneI | GTGCAC | 1 cut(s) | 96 |
| XapI | RAATTY | 4 cut(s) | 279, 857, 1065, 1161 |
| XmiI | GTMKAC | 1 cut(s) | 1251 |
| XspI | CTAG | 1 cut(s) | 24 |