Rw3G022100

NAD(P)H-binding

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
26981741 .. 26990415
8675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G022100.1

Sequence Viewer

Length: 1359 bp
ATGGAAGCTGGTGCAGATAGAGCTAGCAGGTCTCCTATTACTGCTCGTCCTCCTTCGAAGCATCCCCACTTTAAAAAGTTGCAAGCTCCAAGTAGTGCACTTTTTCTGAAAATATTTGATGGGGCGTGTGATGCTTCTTGGGGACAGAATGGTTTGGGTGCGGTTATTATAAATGATCAAGGTCAGTTGAAAGGTGCTCTTGCAATACCCCATTCGGTTTTTCTTCCACCTCGTTCATTCATTAGACAAACCCTCTTCTCTCCAAAACCCTCTCTAAAAATTTTAAAAAAGCCTATTGCCATGAAGAGCTTTAGGACTTCTCCAAGGCTATTCGTAAGCAGAAATGAAACTCTGACTTCTACAATGTTGAAGGTTTCCCACACTCCCACAGAAACACCACGACACAGAGACACCCCGACACCTCCCCGTCCAGGAACCGACTCGCCGTCTCTCCTTTCCATGGGCCTCCCCTTCTCAGCCCCTCTCTTCGACCGAGTTGTTTCCACTGCAAATAACGGTGGGTTTACAAGCATCAGAACAAAGAATCTATCAACACCTGAGGATCTCTCTGCATATGATGGTTTAGAGCTGCGCCTTAAAGGTGATGGTCGTCGTTATAAACTAATTGTTCGGACAAGTGGTGATTGGGATACTGTTGGTTACACAGCAGGCTTTGACACTGTAAAAGACCAGTGGCAGACAGTACGGCTTCCATTTTCTTCTTTGAGGCCTATTTTTCGTGCAAAAACTGTATCAGATGCGCCACCATTTGACCCGAGCAATATTGTGTCACTGCAGCTTATGTTCAGCAAGTTTGAATATGATGGAAAACTCAATCCTACTTTTGTGGAAGGGGAATTTAAGCTCCCAGTTTCAAGCATAAGGGCATATCTGAAAGATCCTATAACTCCCAGGTTTGTACACGTAGGCTCTGCAGGAGTTACTCGGCCTGAGAGACCTGGACTTGATCTAAGTAAACAACCTCCTGCTGTGCGGTTGAACAAGGAATTGGATTTTATCCTGACTTTCAAATTGAAGGGGGAGGATTTAATTCGGGAAAGTGGAATTCCATATACAATTGTGAGGCCTTGTGCATTAACTGAGGAGCCTGCTGGAGCAGATCTCATTTTTGACCAAGGAGACAATATAACGGTTGCTCAAATTTGTGTTGCTGCATTAGAAAGCCCATACGCTACTGGCAAGACATTTGAGGTTAAAAGTGTTATACCATTTAGCGAGCCATTTACAGTAGACCCTGAAAATCCACCCCCTGAGAAGGACTACGATGTTTACTTTAAAACTTTGAAGGATGGAATTACAGGAAAAGAAGTCTTAGAACAAAATCCTGTACCAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

452

Amino Acids

49.8

Weight (kDa)

9.18

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 163 - 290 2.7e-32 Complex I intermediate-associated protein 30 (CIA30)
NAD_binding_10 PF13460 304 - 393 1.1e-07 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 170, 618
Acc36I ACCTGC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 1251
AciI CCGC 2 cut(s) 161, 994
AclWI GGATC 2 cut(s) 570, 893
AcsI RAATTY 4 cut(s) 279, 857, 1065, 1161
AfaI GTAC 3 cut(s) 705, 921, 1350
AfiI CCNNNNNNNGG 3 cut(s) 431, 460, 1276
AflIII ACRYGT 1 cut(s) 922
AgsI TTSAA 8 cut(s) 190, 370, 818, 876, 1000, 1030, 1036, 1306
AhdI GACNNNNNGTC 1 cut(s) 445
AjnI CCWGG 3 cut(s) 430, 911, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 992, 1024
AluBI AGCT 7 cut(s) 8, 23, 86, 309, 589, 799, 865
AluI AGCT 7 cut(s) 8, 23, 86, 309, 589, 799, 865
Alw21I GWGCWC 2 cut(s) 100, 199
Alw26I GTCTC 5 cut(s) 36, 402, 453, 949, 1134
Alw44I GTGCAC 1 cut(s) 96
AlwI GGATC 2 cut(s) 570, 893
Ama87I CYCGRG 1 cut(s) 775
AoxI GGCC 4 cut(s) 463, 728, 947, 1085
ApaLI GTGCAC 1 cut(s) 96
ApeKI GCWGC 3 cut(s) 589, 796, 1172
ApoI RAATTY 4 cut(s) 279, 857, 1065, 1161
AspLEI GCGC 2 cut(s) 594, 763
AspS9I GGNCC 1 cut(s) 463
AsuHPI GGTGA 2 cut(s) 614, 653
AsuII TTCGAA 1 cut(s) 56
AsuNHI GCTAGC 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 775
AxyI CCTNAGG 1 cut(s) 558
BaeGI GKGCMC 1 cut(s) 100
Bbv12I GWGCWC 2 cut(s) 100, 199
BbvI GCAGC 3 cut(s) 576, 808, 1159
BccI CCATC 5 cut(s) 113, 572, 599, 818, 1304
BceAI ACGGC 2 cut(s) 430, 722
BciT130I CCWGG 3 cut(s) 432, 913, 960
BciVI GTATCC 1 cut(s) 643
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 5 cut(s) 36, 402, 453, 949, 1134
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 794, 933
BfuAI ACCTGC 1 cut(s) 18
BfuI GTATCC 1 cut(s) 643
BglII AGATCT 1 cut(s) 1120
BisI GCNGC 3 cut(s) 590, 797, 1173
BlsI GCNGC 3 cut(s) 591, 798, 1174
Bme1390I CCNGG 3 cut(s) 432, 913, 960
BmeRI GACNNNNNGTC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 775
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 2 cut(s) 436, 1107
BmrFI CCNGG 3 cut(s) 432, 913, 960
BmrI ACTGGG 1 cut(s) 863
BmsI GCATC 4 cut(s) 70, 121, 540, 748
BmtI GCTAGC 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 863
BplI GAGNNNNNCTC 4 cut(s) 551, 583, 1107, 1139
BpmI CTGGAG 1 cut(s) 1134
Bpu14I TTCGAA 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 925
BsaI GGTCTC 2 cut(s) 36, 949
BsaJI CCNNGG 4 cut(s) 323, 459, 911, 1135
Bsc4I CCNNNNNNNGG 3 cut(s) 431, 460, 1276
Bse1I ACTGG 4 cut(s) 691, 869, 1201, 1352
Bse21I CCTNAGG 1 cut(s) 558
BseBI CCWGG 3 cut(s) 432, 913, 960
BseDI CCNNGG 4 cut(s) 323, 459, 911, 1135
BseGI GGATG 2 cut(s) 61, 1315
BseLI CCNNNNNNNGG 3 cut(s) 431, 460, 1276
BseMII CTCAG 5 cut(s) 489, 549, 942, 1092, 1263
BseNI ACTGG 4 cut(s) 691, 869, 1201, 1352
BseRI GAGGAG 1 cut(s) 1118
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 3 cut(s) 576, 808, 1159
BsgI GTGCAG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 493
BshFI GGCC 4 cut(s) 465, 730, 949, 1087
BsiEI CGRYCG 1 cut(s) 493
BsiHKAI GWGCWC 2 cut(s) 100, 199
BsiHKCI CYCGRG 1 cut(s) 775
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 3 cut(s) 431, 460, 1276
BsmAI GTCTC 5 cut(s) 36, 402, 453, 949, 1134
BsmBI CGTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 4 cut(s) 465, 730, 949, 1087
Bso31I GGTCTC 2 cut(s) 36, 949
BsoBI CYCGRG 1 cut(s) 775
Bsp119I TTCGAA 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 100, 199
Bsp1407I TGTACA 1 cut(s) 919
Bsp143I GATC 5 cut(s) 175, 562, 898, 967, 1120
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 2 cut(s) 161, 994
BspANI GGCC 4 cut(s) 465, 730, 949, 1087
BspCNI CTCAG 5 cut(s) 488, 550, 943, 1093, 1264
BspLI GGNNCC 2 cut(s) 436, 1107
BspMAI CTGCAG 2 cut(s) 798, 937
BspMI ACCTGC 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 27
BspPI GGATC 2 cut(s) 570, 893
BspQI GCTCTTC 1 cut(s) 299
BspT104I TTCGAA 1 cut(s) 56
BspTNI GGTCTC 2 cut(s) 36, 949
BsrGI TGTACA 1 cut(s) 919
BsrI ACTGG 4 cut(s) 691, 869, 1201, 1352
BssECI CCNNGG 4 cut(s) 323, 459, 911, 1135
BssMI GATC 5 cut(s) 175, 562, 898, 967, 1120
BssT1I CCWWGG 3 cut(s) 323, 459, 1135
Bst2UI CCWGG 3 cut(s) 432, 913, 960
Bst4CI ACNGT 7 cut(s) 518, 655, 682, 703, 751, 1153, 1249
Bst6I CTCTTC 3 cut(s) 260, 299, 491
BstAUI TGTACA 1 cut(s) 919
BstBAI YACGTR 1 cut(s) 925
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 5 cut(s) 25, 84, 670, 1110, 1238
BstDEI CTNAG 7 cut(s) 475, 558, 951, 971, 1101, 1272, 1333
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 2 cut(s) 61, 1315
BstHHI GCGC 2 cut(s) 594, 763
BstKTI GATC 5 cut(s) 178, 565, 901, 970, 1123
BstMAI GTCTC 5 cut(s) 36, 402, 453, 949, 1134
BstMBI GATC 5 cut(s) 175, 562, 898, 967, 1120
BstMCI CGRYCG 1 cut(s) 493
BstMWI GCNNNNNNNGC 2 cut(s) 20, 131
BstNI CCWGG 3 cut(s) 432, 913, 960
BstSCI CCNGG 3 cut(s) 430, 911, 958
BstSFI CTRYAG 2 cut(s) 794, 933
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 3 cut(s) 576, 808, 1159
BstX2I RGATCY 3 cut(s) 562, 898, 1120
BstYI RGATCY 3 cut(s) 562, 898, 1120
Bsu36I CCTNAGG 1 cut(s) 558
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 4 cut(s) 465, 730, 949, 1087
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 2 cut(s) 61, 1315
BtsI GCAGTG 2 cut(s) 504, 791
BtsIMutI CAGTG 4 cut(s) 504, 678, 698, 791
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 5 cut(s) 25, 84, 670, 1110, 1238
CfoI GCGC 2 cut(s) 594, 763
Cfr13I GGNCC 1 cut(s) 463
Csp6I GTAC 3 cut(s) 704, 920, 1349
CviAII CATG 2 cut(s) 301, 460
CviQI GTAC 3 cut(s) 704, 920, 1349
DdeI CTNAG 7 cut(s) 475, 558, 951, 971, 1101, 1272, 1333
DpnI GATC 5 cut(s) 177, 564, 900, 969, 1122
DpnII GATC 5 cut(s) 175, 562, 898, 967, 1120
DraI TTTAAA 3 cut(s) 73, 285, 1297
DriI GACNNNNNGTC 1 cut(s) 445
Eam1104I CTCTTC 3 cut(s) 260, 299, 491
Eam1105I GACNNNNNGTC 1 cut(s) 445
EarI CTCTTC 3 cut(s) 260, 299, 491
Eco130I CCWWGG 3 cut(s) 323, 459, 1135
Eco147I AGGCCT 2 cut(s) 730, 1087
Eco31I GGTCTC 2 cut(s) 36, 949
Eco81I CCTNAGG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 775
EcoRI GAATTC 1 cut(s) 1065
EcoRII CCWGG 3 cut(s) 430, 911, 958
EcoT14I CCWWGG 3 cut(s) 323, 459, 1135
ErhI CCWWGG 3 cut(s) 323, 459, 1135
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 2 cut(s) 304, 463
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 156
FatI CATG 2 cut(s) 300, 459
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 1 cut(s) 175
FblI GTMKAC 1 cut(s) 1251
Fnu4HI GCNGC 3 cut(s) 590, 797, 1173
FokI GGATG 2 cut(s) 48, 1322
Fsp4HI GCNGC 3 cut(s) 590, 797, 1173
FspBI CTAG 1 cut(s) 24
GlaI GCGC 2 cut(s) 593, 762
GluI GCNGC 3 cut(s) 590, 797, 1173
GsuI CTGGAG 1 cut(s) 1134
HaeIII GGCC 4 cut(s) 465, 730, 949, 1087
HhaI GCGC 2 cut(s) 594, 763
Hin1II CATG 2 cut(s) 304, 463
Hin6I GCGC 2 cut(s) 592, 761
HinP1I GCGC 2 cut(s) 592, 761
HinfI GANTC 2 cut(s) 440, 544
HphI GGTGA 2 cut(s) 614, 653
Hpy166II GTNNAC 6 cut(s) 98, 525, 922, 977, 1252, 1291
Hpy188I TCNGA 6 cut(s) 108, 354, 536, 633, 757, 894
Hpy188III TCNNGA 2 cut(s) 1021, 1055
Hpy8I GTNNAC 6 cut(s) 98, 525, 922, 977, 1252, 1291
Hpy99I CGWCG 1 cut(s) 615
HpyAV CCTTC 7 cut(s) 63, 364, 481, 845, 1030, 1270, 1300
HpyCH4III ACNGT 7 cut(s) 518, 655, 682, 703, 751, 1153, 1249
HpyCH4IV ACGT 1 cut(s) 924
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 131
HpyF3I CTNAG 7 cut(s) 475, 558, 951, 971, 1101, 1272, 1333
HpySE526I ACGT 1 cut(s) 924
Hsp92II CATG 2 cut(s) 304, 463
HspAI GCGC 2 cut(s) 592, 761
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 5 cut(s) 175, 562, 898, 967, 1120
LguI GCTCTTC 1 cut(s) 299
LmnI GCTCC 4 cut(s) 91, 870, 1105, 1115
Lsp1109I GCAGC 3 cut(s) 576, 808, 1159
LweI GCATC 4 cut(s) 70, 121, 540, 748
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 3 cut(s) 659, 789, 940
MalI GATC 5 cut(s) 177, 564, 900, 969, 1122
MboI GATC 5 cut(s) 175, 562, 898, 967, 1120
MboII GAAGA 5 cut(s) 215, 247, 316, 478, 711
MfeI CAATTG 1 cut(s) 1077
MflI RGATCY 3 cut(s) 562, 898, 1120
MhlI GDGCHC 2 cut(s) 100, 199
MlyI GAGTC 1 cut(s) 434
MseI TTAA 8 cut(s) 72, 284, 597, 861, 1049, 1097, 1215, 1296
MspR9I CCNGG 3 cut(s) 432, 913, 960
MunI CAATTG 1 cut(s) 1077
MvaI CCWGG 3 cut(s) 432, 913, 960
MwoI GCNNNNNNNGC 2 cut(s) 20, 131
NcoI CCATGG 1 cut(s) 459
NdeI CATATG 1 cut(s) 574
NdeII GATC 5 cut(s) 175, 562, 898, 967, 1120
NheI GCTAGC 1 cut(s) 23
NlaIII CATG 2 cut(s) 304, 463
NlaIV GGNNCC 2 cut(s) 436, 1107
NmeAIII GCCGAG 1 cut(s) 925
NmuCI GTSAC 1 cut(s) 789
NspV TTCGAA 1 cut(s) 56
PceI AGGCCT 2 cut(s) 730, 1087
PciSI GCTCTTC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 430
PkrI GCNGC 3 cut(s) 591, 798, 1174
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
Ppu21I YACGTR 1 cut(s) 925
PsiI TTATAA 2 cut(s) 170, 618
Psp6I CCWGG 3 cut(s) 430, 911, 958
PspGI CCWGG 3 cut(s) 430, 911, 958
PspN4I GGNNCC 2 cut(s) 436, 1107
PspPI GGNCC 1 cut(s) 463
PstI CTGCAG 2 cut(s) 798, 937
PsuI RGATCY 3 cut(s) 562, 898, 1120
RsaI GTAC 3 cut(s) 705, 921, 1350
RsaNI GTAC 3 cut(s) 704, 920, 1349
SapI GCTCTTC 1 cut(s) 299
SaqAI TTAA 8 cut(s) 72, 284, 597, 861, 1049, 1097, 1215, 1296
SatI GCNGC 3 cut(s) 590, 797, 1173
Sau3AI GATC 5 cut(s) 175, 562, 898, 967, 1120
Sau96I GGNCC 1 cut(s) 463
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 3 cut(s) 432, 913, 960
SduI GDGCHC 2 cut(s) 100, 199
SfaNI GCATC 4 cut(s) 70, 121, 540, 748
SfcI CTRYAG 2 cut(s) 794, 933
SfuI TTCGAA 1 cut(s) 56
SseBI AGGCCT 2 cut(s) 730, 1087
SsiI CCGC 2 cut(s) 161, 994
SspI AATATT 2 cut(s) 114, 784
SspMI CTAG 1 cut(s) 24
StuI AGGCCT 2 cut(s) 730, 1087
StyD4I CCNGG 3 cut(s) 430, 911, 958
StyI CCWWGG 3 cut(s) 323, 459, 1135
TaaI ACNGT 7 cut(s) 518, 655, 682, 703, 751, 1153, 1249
TaiI ACGT 1 cut(s) 927
TaqI TCGA 2 cut(s) 56, 489
TaqII GACCGA 1 cut(s) 507
TatI WGTACW 1 cut(s) 919
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 8 cut(s) 72, 284, 597, 861, 1049, 1097, 1215, 1296
Tru9I TTAA 8 cut(s) 72, 284, 597, 861, 1049, 1097, 1215, 1296
TscAI CASTG 4 cut(s) 511, 685, 698, 798
TseFI GTSAC 1 cut(s) 789
TseI GCWGC 3 cut(s) 589, 796, 1172
Tsp45I GTSAC 1 cut(s) 789
TspDTI ATGAA 4 cut(s) 225, 229, 317, 360
TspRI CASTG 4 cut(s) 511, 685, 698, 798
VneI GTGCAC 1 cut(s) 96
XapI RAATTY 4 cut(s) 279, 857, 1065, 1161
XmiI GTMKAC 1 cut(s) 1251
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.