Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000908

Physical Location & Seq

Genomic Coordinates Reverse (-)

7703729 .. 7705773

Gene Structure 2045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29227

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTCAGCAAGTTTGAATATGATGGAAAACTCAATCCTACTTTTGTGGAAGGGGAATTTAAGCTCCCAGTTTCAAGCATAAGGGCATATCTGAAAGATCCTATAACTCCCAGGTTTGTACACGTAGGCTCTGCAGGAGTTACCCGGCCTGAGAGACCTGGACTTGATCTAAGTAAACAACCTCCTGCTGTGCGGTTGAACAAGGAATTGGATTTTATCCTGACTTTCAAATTGAAGGGGGAGGATTTAATTCGGGAAAGTGGAATTCCATATACAATTGTGAGGCCTTGTGCATTAACTGAGGAGCCTGCTGGAGCAGATCTCATTTTTGACCAAGGAGACAATATAACGGGTAAGATATCAAGAGAAGAGGTTGCTCAAATTTGTGTTGCTGCATTAGAAAGCCCATACGCTACTGGCAAGACATTTGAGGTTAAAAGTGTTATACCATTTAGCGAGCCATTTACAGTAGACCCTGAAAATCCACCCCCTGAGAAGGACTACGATGTTTACTTCAAAACTTTGAAGGATGGAATTACAGGAAAAGAAGTCTTAGAACAAAATCCTGTACCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIA30 NAD_binding_10

Protein Analysis

192

Amino Acids

21.32

Weight (kDa)

4.91

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_10	PF13460	37 - 136	1.1e-14	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18810 AT4G18810
fragaria_vesca	FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310
malus_domestica	MD00G1009300.v1.1 MD05G1295400.v1.1
prunus_persica	Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.4G066900_v2.0.a1 Prupe.4G066900_v2.0.a1 Prupe.7G223300_v2.0.a1
pyrus_communis	pycom05g27430
rosa_chinensis	RchiOBHm_Chr0c19g0500071 RchiOBHm_Chr2g0109861 RchiOBHm_Chr2g0109871 RchiOBHm_Chr5g0011641 RchiOBHm_Chr5g0011651 RchiOBHm_Chr5g0061601
rosa_laevigata	RLG00000031851
rosa_multiflora	Rmu_sc0001886.1_g000003 Rmu_sc0003291.1_g000002 Rmu_sc0004507.1_g000043 Rmu_sc0004976.1_g000017 Rmu_sc0009001.1_g000017
rosa_roxburghii	Rroxscaffold_1G00064860 Rroxscaffold_2G00134770 Rroxscaffold_5G00347910 Rroxscaffold_6G00417970
rosa_rugosa	Rorug02G0325700 Rorug04G0458200
rosa_samantha	Rh2AG008200 Rh2CG217400 Rh4AG096400 Rh4CG105400 Rh4DG067600 Rh5AG090000 Rh5AG331600 Rh5CG099300 Rh5DG085400 Rh7AG398700
rosa_wichuraiana	Rw1G004630 Rw3G022100 Rw3G027770 Rw5G007830 Rw5G021990 Rw5G048270 Rw6G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	471
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	92
AcsI	RAATTY	3 cut(s)	56, 264, 381
AfaI	GTAC	2 cut(s)	120, 570
AfiI	CCNNNNNNNGG	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	7 cut(s)	17, 75, 199, 229, 235, 517, 526
AjnI	CCWGG	2 cut(s)	110, 157
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	148, 333
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	146, 284
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	3 cut(s)	56, 264, 381
AsuC2I	CCSGG	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	17, 524
BciT130I	CCWGG	2 cut(s)	112, 159
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	148, 333
BfmI	CTRYAG	1 cut(s)	132
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	3 cut(s)	112, 145, 159
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	3 cut(s)	112, 145, 159
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	306, 338
BpmI	CTGGAG	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	145
BsaAI	YACGTR	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	110, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	3 cut(s)	68, 421, 572
BseBI	CCWGG	2 cut(s)	112, 159
BseDI	CCNNGG	2 cut(s)	110, 334
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMII	CTCAG	3 cut(s)	141, 291, 483
BseNI	ACTGG	3 cut(s)	68, 421, 572
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	2 cut(s)	148, 286
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmAI	GTCTC	2 cut(s)	148, 333
BsnI	GGCC	2 cut(s)	148, 286
Bso31I	GGTCTC	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	97, 166, 319
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	2 cut(s)	148, 286
BspCNI	CTCAG	3 cut(s)	142, 292, 484
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	118
BsrI	ACTGG	3 cut(s)	68, 421, 572
BssECI	CCNNGG	2 cut(s)	110, 334
BssMI	GATC	3 cut(s)	97, 166, 319
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	112, 159
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	363
BstAUI	TGTACA	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	309, 458
BstDEI	CTNAG	5 cut(s)	150, 170, 300, 492, 553
BstF5I	GGATG	1 cut(s)	535
BstKTI	GATC	3 cut(s)	100, 169, 322
BstMAI	GTCTC	2 cut(s)	148, 333
BstMBI	GATC	3 cut(s)	97, 166, 319
BstNI	CCWGG	2 cut(s)	112, 159
BstSCI	CCNGG	3 cut(s)	110, 143, 157
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	97, 319
BstYI	RGATCY	2 cut(s)	97, 319
BsuRI	GGCC	2 cut(s)	148, 286
BtsCI	GGATG	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	309, 458
Csp6I	GTAC	2 cut(s)	119, 569
CviJI	RGCY	7 cut(s)	64, 129, 148, 286, 307, 405, 460
CviKI_1	RGCY	7 cut(s)	64, 129, 148, 286, 307, 405, 460
CviQI	GTAC	2 cut(s)	119, 569
DdeI	CTNAG	5 cut(s)	150, 170, 300, 492, 553
DpnI	GATC	3 cut(s)	99, 168, 321
DpnII	GATC	3 cut(s)	97, 166, 319
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	334
Eco147I	AGGCCT	1 cut(s)	286
Eco31I	GGTCTC	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	110, 157
EcoRV	GATATC	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	148, 286
HapII	CCGG	1 cut(s)	145
HpaII	CCGG	1 cut(s)	145
Hpy166II	GTNNAC	4 cut(s)	121, 176, 472, 511
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	3 cut(s)	220, 254, 363
Hpy8I	GTNNAC	4 cut(s)	121, 176, 472, 511
HpyAV	CCTTC	4 cut(s)	44, 229, 490, 520
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	134, 293, 395
HpyF3I	CTNAG	5 cut(s)	150, 170, 300, 492, 553
HpySE526I	ACGT	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	97, 166, 319
LmnI	GCTCC	3 cut(s)	69, 304, 314
Lsp1109I	GCAGC	1 cut(s)	379
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	99, 168, 321
MboI	GATC	3 cut(s)	97, 166, 319
MboII	GAAGA	1 cut(s)	380
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	2 cut(s)	97, 319
MluCI	AATT	8 cut(s)	56, 206, 230, 249, 264, 276, 381, 534
MnlI	CCTC	6 cut(s)	192, 235, 276, 295, 364, 424
MseI	TTAA	4 cut(s)	60, 248, 296, 435
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	3 cut(s)	112, 145, 159
MunI	CAATTG	1 cut(s)	276
MvaI	CCWGG	2 cut(s)	112, 159
NciI	CCSGG	1 cut(s)	145
NdeII	GATC	3 cut(s)	97, 166, 319
NlaIV	GGNNCC	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	394
Ppu21I	YACGTR	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	110, 157
PspGI	CCWGG	2 cut(s)	110, 157
PspN4I	GGNNCC	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	97, 319
RsaI	GTAC	2 cut(s)	120, 570
RsaNI	GTAC	2 cut(s)	119, 569
SaqAI	TTAA	4 cut(s)	60, 248, 296, 435
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	3 cut(s)	97, 166, 319
ScrFI	CCNGG	3 cut(s)	112, 145, 159
SetI	ASST	7 cut(s)	66, 116, 126, 160, 184, 375, 435
SfcI	CTRYAG	1 cut(s)	132
Sse9I	AATT	8 cut(s)	56, 206, 230, 249, 264, 276, 381, 534
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	1 cut(s)	193
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	3 cut(s)	110, 143, 157
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	1 cut(s)	126
TasI	AATT	8 cut(s)	56, 206, 230, 249, 264, 276, 381, 534
TatI	WGTACW	1 cut(s)	118
Tru1I	TTAA	4 cut(s)	60, 248, 296, 435
Tru9I	TTAA	4 cut(s)	60, 248, 296, 435
TseI	GCWGC	1 cut(s)	392
XapI	RAATTY	3 cut(s)	56, 264, 381
XmiI	GTMKAC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.