Rmu_sc0004507.1_g000043

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004507.1
OG0000908
Physical Location & Seq
Forward (+)
192153 .. 195325
3173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004507.1_g000043.1.cds

Sequence Viewer

Length: 597 bp
ctggccatcttggtcacctccagatgcttcaactctctcaggctcgattgtaagcccaatcaatctctctctctctctcccctcaccgatggctacttctccttgtacccctacaagctcgaagaggtcaacatcgagtgcgacgagaagggcgaagaggactggttcgtcagtctcactgttgatgactacccttttctcaaacaagacgatcttcttcacattatgtcatttctacctaaagatcagaactttgtgaaccattcattggctggaaagagtaaggtacggcttccattttcttctttgaggcctatttttcgtgcaaaaactgtatcagatgcgccaccatttgacccgagcaatattgtgtcactgcagcttatgttcagcaagtttgaatatgatggaaaactcaatcctacttttgtggaaggggaatttaagctcccagtttcaagcataagggcatatctgaaagatcctataactcccaggtttgtacacgtaggctctgcaggagttactcggcctgagagacctggacttgatctaagtaaacaacctcctgctgtgcggttgaacaaggaattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CIA30 NAD_binding_10

Protein Analysis

198

Amino Acids

22.44

Weight (kDa)

6.36

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 268
AciI CCGC 1 cut(s) 577
AclWI GGATC 1 cut(s) 476
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 440
AfaI GTAC 3 cut(s) 107, 288, 504
AfiI CCNNNNNNNGG 1 cut(s) 268
AflIII ACRYGT 1 cut(s) 505
AgsI TTSAA 4 cut(s) 31, 401, 459, 583
AjnI CCWGG 2 cut(s) 494, 541
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 3 cut(s) 118, 382, 448
AluI AGCT 3 cut(s) 118, 382, 448
Alw26I GTCTC 2 cut(s) 179, 532
AlwI GGATC 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 358
AoxI GGCC 3 cut(s) 3, 311, 530
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 440
AspLEI GCGC 1 cut(s) 346
AsuHPI GGTGA 2 cut(s) 7, 76
AvaI CYCGRG 1 cut(s) 358
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 391
BccI CCATC 3 cut(s) 14, 83, 401
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 2 cut(s) 496, 543
BcoDI GTCTC 2 cut(s) 179, 532
BfmI CTRYAG 2 cut(s) 377, 516
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 496, 543
BmeT110I CYCGRG 1 cut(s) 358
BmrFI CCNGG 2 cut(s) 496, 543
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 2 cut(s) 14, 331
BmuI ACTGGG 1 cut(s) 446
BpmI CTGGAG 1 cut(s) 4
BsaAI YACGTR 1 cut(s) 508
BsaI GGTCTC 1 cut(s) 532
BsaJI CCNNGG 1 cut(s) 494
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 167, 452
BseBI CCWGG 2 cut(s) 496, 543
BseDI CCNNGG 1 cut(s) 494
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 52, 525
BseNI ACTGG 2 cut(s) 167, 452
BseXI GCAGC 1 cut(s) 391
BshFI GGCC 3 cut(s) 5, 313, 532
BsiHKCI CYCGRG 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 179, 532
BsnI GGCC 3 cut(s) 5, 313, 532
Bso31I GGTCTC 1 cut(s) 532
BsoBI CYCGRG 1 cut(s) 358
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 4 cut(s) 211, 244, 481, 550
BspACI CCGC 1 cut(s) 577
BspANI GGCC 3 cut(s) 5, 313, 532
BspCNI CTCAG 2 cut(s) 51, 526
BspMAI CTGCAG 2 cut(s) 381, 520
BspPI GGATC 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 532
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 2 cut(s) 167, 452
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 4 cut(s) 211, 244, 481, 550
Bst2UI CCWGG 2 cut(s) 496, 543
Bst4CI ACNGT 2 cut(s) 181, 334
Bst6I CTCTTC 2 cut(s) 117, 150
BstAUI TGTACA 1 cut(s) 502
BstBAI YACGTR 1 cut(s) 508
BstDEI CTNAG 3 cut(s) 38, 534, 554
BstEII GGTNACC 1 cut(s) 13
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 4 cut(s) 214, 247, 484, 553
BstMAI GTCTC 2 cut(s) 179, 532
BstMBI GATC 4 cut(s) 211, 244, 481, 550
BstNI CCWGG 2 cut(s) 496, 543
BstPI GGTNACC 1 cut(s) 13
BstSCI CCNGG 2 cut(s) 494, 541
BstSFI CTRYAG 2 cut(s) 377, 516
BstV1I GCAGC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BsuRI GGCC 3 cut(s) 5, 313, 532
BtsI GCAGTG 1 cut(s) 374
BtsIMutI CAGTG 2 cut(s) 177, 374
CfoI GCGC 1 cut(s) 346
Csp6I GTAC 3 cut(s) 106, 287, 503
CviQI GTAC 3 cut(s) 106, 287, 503
DdeI CTNAG 3 cut(s) 38, 534, 554
DpnI GATC 4 cut(s) 213, 246, 483, 552
DpnII GATC 4 cut(s) 211, 244, 481, 550
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 117, 150
EarI CTCTTC 2 cut(s) 117, 150
Eco147I AGGCCT 1 cut(s) 313
Eco31I GGTCTC 1 cut(s) 532
Eco88I CYCGRG 1 cut(s) 358
Eco91I GGTNACC 1 cut(s) 13
EcoO65I GGTNACC 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 494, 541
FaiI YATR 6 cut(s) 227, 386, 405, 464, 472, 488
FalI AAGNNNNNCTT 2 cut(s) 198, 230
Fnu4HI GCNGC 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 380
GlaI GCGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 380
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 3 cut(s) 5, 313, 532
HhaI GCGC 1 cut(s) 346
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HphI GGTGA 2 cut(s) 7, 76
Hpy166II GTNNAC 4 cut(s) 130, 259, 505, 560
Hpy188I TCNGA 3 cut(s) 249, 340, 477
Hpy188III TCNNGA 1 cut(s) 21
Hpy8I GTNNAC 4 cut(s) 130, 259, 505, 560
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 142, 428
HpyCH4III ACNGT 2 cut(s) 181, 334
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 3 cut(s) 326, 379, 518
HpyF3I CTNAG 3 cut(s) 38, 534, 554
HpySE526I ACGT 1 cut(s) 507
HspAI GCGC 1 cut(s) 344
Kzo9I GATC 4 cut(s) 211, 244, 481, 550
LmnI GCTCC 1 cut(s) 453
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 14, 331
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 3 cut(s) 13, 372, 523
MalI GATC 4 cut(s) 213, 246, 483, 552
MboI GATC 4 cut(s) 211, 244, 481, 550
MboII GAAGA 5 cut(s) 134, 167, 206, 209, 294
MflI RGATCY 1 cut(s) 481
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 440, 590
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 6 cut(s) 28, 92, 118, 151, 303, 576
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 496, 543
MvaI CCWGG 2 cut(s) 496, 543
NdeII GATC 4 cut(s) 211, 244, 481, 550
NmeAIII GCCGAG 1 cut(s) 508
NmuCI GTSAC 2 cut(s) 13, 372
PceI AGGCCT 1 cut(s) 313
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 150
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 1 cut(s) 381
Ppu21I YACGTR 1 cut(s) 508
Psp6I CCWGG 2 cut(s) 494, 541
PspEI GGTNACC 1 cut(s) 13
PspGI CCWGG 2 cut(s) 494, 541
PstI CTGCAG 2 cut(s) 381, 520
PsuI RGATCY 1 cut(s) 481
RsaI GTAC 3 cut(s) 107, 288, 504
RsaNI GTAC 3 cut(s) 106, 287, 503
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 4 cut(s) 211, 244, 481, 550
ScrFI CCNGG 2 cut(s) 496, 543
SfaNI GCATC 2 cut(s) 14, 331
SfcI CTRYAG 2 cut(s) 377, 516
Sse9I AATT 2 cut(s) 440, 590
SseBI AGGCCT 1 cut(s) 313
SsiI CCGC 1 cut(s) 577
SspI AATATT 1 cut(s) 367
StuI AGGCCT 1 cut(s) 313
StyD4I CCNGG 2 cut(s) 494, 541
TaaI ACNGT 2 cut(s) 181, 334
TaiI ACGT 1 cut(s) 510
TaqI TCGA 3 cut(s) 45, 120, 135
TasI AATT 2 cut(s) 440, 590
TatI WGTACW 1 cut(s) 502
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 2 cut(s) 184, 381
TseFI GTSAC 2 cut(s) 13, 372
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 2 cut(s) 13, 372
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 2 cut(s) 184, 381
Van91I CCANNNNNTGG 1 cut(s) 268
XapI RAATTY 1 cut(s) 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.