Rroxscaffold_6G00417970

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000908
Physical Location & Seq
Reverse (-)
39527043 .. 39535767
8725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417970.1

Sequence Viewer

Length: 861 bp
ATGCCATGGCCACGCCCTCTCGCCACCCCAAGAAGCGGCCCGGAGCGTCTCACCGATTCGTACAAGGTTGTGGAGTTCCCGAAAATGTCAAGATCTGGACGAGAATGGGTCTGGTTTAGCTGGAAAACTAGCAAAATAAAGAAGCAGCGTGGAATCAAGAAGAGTGATTGGAAAATAATAGCAATGGGTGAAGTTATGAAATCAGATATTGAAGCTCTTACAACAGCGTTTACCGCTACCATCAATTCCATGAATAATCGATTGGAGAAATTCGTGGATTGTTGGGGTATGAAGTTCTTTGAACCAGAGATCAAGGGAGATTCGCCTGAAAAGGTGGAGTACGTTGGGATGAAAAATTTGATTAATGTTCTAAAACAAAGTGTTGGACTTCAAAATGGAAAGCTACTATTTGGATATGAAGGTAATAATTATAGGGAATTGACTTGGGGAGCTTTAGATGATGTTGTGATGGGTGGAGTGAGTGAAAGTACATTTCTGATCGACCCAAATGGCAGTGAAAATGGTGGACCAACTGGACTTTTTAAAGGAGTTGTTTTTACTGCAAATAACGGTGGGTTTACAAGCATCAAAACAAAGAATCTATCAACTCCCGAGGATCTCTCTGCATATGATGGTATAGAGCTGCGCCTTAAAGGTGATGGTAGTCGTTATAAACTAATTCTTCGGACAAGTGGTGATTGGGATACTTGTTGGTTACACGGCAGGGCTTTGACACGTAAAAGACCAACGGCGGACGATATAAGGGACTTGCAGATTTTGAGGTTTATATTAACATGCCCTACTGATGATAAAGTGCTCAAAGTGATGGTCGATCGAGAGAATCTGCATTTGGATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CIA30 NAD_binding_10

Protein Analysis

286

Amino Acids

32.33

Weight (kDa)

8.96

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 147 - 236 7.8e-22 Complex I intermediate-associated protein 30 (CIA30)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 672
AciI CCGC 3 cut(s) 36, 234, 752
AclWI GGATC 1 cut(s) 624
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 2 cut(s) 269, 355
AfaI GTAC 3 cut(s) 62, 341, 490
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 734
AgsI TTSAA 3 cut(s) 212, 302, 392
AjuI GAANNNNNNNTTGG 3 cut(s) 245, 277, 833
AluBI AGCT 5 cut(s) 120, 215, 403, 452, 643
AluI AGCT 5 cut(s) 120, 215, 403, 452, 643
Alw21I GWGCWC 1 cut(s) 819
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 624
Ama87I CYCGRG 1 cut(s) 611
AoxI GGCC 2 cut(s) 8, 37
ApeKI GCWGC 2 cut(s) 145, 643
ApoI RAATTY 2 cut(s) 269, 355
ArsI GACNNNNNNTTYG 2 cut(s) 813, 845
AseI ATTAAT 1 cut(s) 363
AspLEI GCGC 1 cut(s) 648
AspS9I GGNCC 2 cut(s) 38, 527
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 4 cut(s) 43, 200, 668, 707
AvaI CYCGRG 1 cut(s) 611
AvaII GGWCC 1 cut(s) 527
BalI TGGCCA 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 819
BbvI GCAGC 2 cut(s) 157, 630
BccI CCATC 5 cut(s) 248, 463, 626, 653, 820
BceAI ACGGC 2 cut(s) 736, 765
BciVI GTATCC 1 cut(s) 697
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 697
BglII AGATCT 1 cut(s) 92
BisI GCNGC 3 cut(s) 37, 146, 644
BlsI GCNGC 3 cut(s) 38, 147, 645
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 611
BmgT120I GGNCC 2 cut(s) 38, 527
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 594
BplI GAGNNNNNCTC 2 cut(s) 605, 637
BpuMI CCSGG 1 cut(s) 41
Bsa29I ATCGAT 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 737
BsaJI CCNNGG 2 cut(s) 5, 612
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 538
Bse3DI GCAATG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 259
BseDI CCNNGG 2 cut(s) 5, 612
BseGI GGATG 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 538
BseXI GCAGC 2 cut(s) 157, 630
Bsh1285I CGRYCG 1 cut(s) 835
BshFI GGCC 2 cut(s) 10, 39
BshVI ATCGAT 1 cut(s) 259
BsiEI CGRYCG 1 cut(s) 835
BsiHKAI GWGCWC 1 cut(s) 819
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 779
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 779
BsnI GGCC 2 cut(s) 10, 39
BsoBI CYCGRG 1 cut(s) 611
Bsp1286I GDGCHC 1 cut(s) 819
Bsp143I GATC 5 cut(s) 92, 309, 498, 616, 832
Bsp19I CCATGG 1 cut(s) 5
BspACI CCGC 3 cut(s) 36, 234, 752
BspANI GGCC 2 cut(s) 10, 39
BspDI ATCGAT 1 cut(s) 259
BspPI GGATC 1 cut(s) 624
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 2 cut(s) 5, 612
BssMI GATC 5 cut(s) 92, 309, 498, 616, 832
BssT1I CCWWGG 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 572
Bst6I CTCTTC 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 737
BstDSI CCRYGG 1 cut(s) 5
BstF5I GGATG 1 cut(s) 354
BstHHI GCGC 1 cut(s) 648
BstKTI GATC 5 cut(s) 95, 312, 501, 619, 835
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 5 cut(s) 92, 309, 498, 616, 832
BstMCI CGRYCG 1 cut(s) 835
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 798
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 157, 630
BstX2I RGATCY 2 cut(s) 92, 616
BstYI RGATCY 2 cut(s) 92, 616
Bsu15I ATCGAT 1 cut(s) 259
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 2 cut(s) 10, 39
BsuTUI ATCGAT 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 5
BtsCI GGATG 1 cut(s) 354
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 1 cut(s) 520
CfoI GCGC 1 cut(s) 648
Cfr13I GGNCC 2 cut(s) 38, 527
ClaI ATCGAT 1 cut(s) 259
CseI GACGC 1 cut(s) 35
Csp6I GTAC 3 cut(s) 61, 340, 489
CviAII CATG 3 cut(s) 6, 250, 795
CviJI RGCY 8 cut(s) 10, 39, 120, 215, 403, 452, 643, 728
CviKI_1 RGCY 8 cut(s) 10, 39, 120, 215, 403, 452, 643, 728
CviQI GTAC 3 cut(s) 61, 340, 489
DpnI GATC 5 cut(s) 94, 311, 500, 618, 834
DpnII GATC 5 cut(s) 92, 309, 498, 616, 832
DraI TTTAAA 1 cut(s) 544
EaeI YGGCCR 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EciI GGCGGA 1 cut(s) 767
Eco130I CCWWGG 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 611
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 3 cut(s) 9, 253, 798
FaqI GGGAC 1 cut(s) 779
FatI CATG 3 cut(s) 5, 249, 794
FauNDI CATATG 1 cut(s) 628
Fnu4HI GCNGC 3 cut(s) 37, 146, 644
FokI GGATG 1 cut(s) 361
Fsp4HI GCNGC 3 cut(s) 37, 146, 644
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 647
GluI GCNGC 3 cut(s) 37, 146, 644
HaeIII GGCC 2 cut(s) 10, 39
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 648
Hin1II CATG 3 cut(s) 9, 253, 798
Hin6I GCGC 1 cut(s) 646
HinP1I GCGC 1 cut(s) 646
HinfI GANTC 5 cut(s) 56, 153, 320, 598, 841
HpaII CCGG 1 cut(s) 41
HphI GGTGA 4 cut(s) 43, 200, 668, 707
Hpy166II GTNNAC 3 cut(s) 231, 527, 579
Hpy188I TCNGA 3 cut(s) 205, 498, 687
Hpy188III TCNNGA 6 cut(s) 79, 90, 96, 157, 611, 836
Hpy8I GTNNAC 3 cut(s) 231, 527, 579
HpyAV CCTTC 1 cut(s) 413
HpyCH4III ACNGT 1 cut(s) 572
HpyCH4IV ACGT 2 cut(s) 342, 736
HpyCH4V TGCA 4 cut(s) 563, 626, 772, 847
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 342, 736
Hsp92II CATG 3 cut(s) 9, 253, 798
HspAI GCGC 1 cut(s) 646
Kzo9I GATC 5 cut(s) 92, 309, 498, 616, 832
LmnI GCTCC 2 cut(s) 43, 449
LpnPI CCDG 8 cut(s) 54, 81, 97, 106, 318, 339, 519, 709
Lsp1109I GCAGC 2 cut(s) 157, 630
LweI GCATC 1 cut(s) 594
MaeI CTAG 1 cut(s) 129
MaeII ACGT 2 cut(s) 342, 736
MaeIII GTNAC 1 cut(s) 714
MalI GATC 5 cut(s) 94, 311, 500, 618, 834
MboI GATC 5 cut(s) 92, 309, 498, 616, 832
MboII GAAGA 2 cut(s) 172, 674
MflI RGATCY 2 cut(s) 92, 616
MhlI GDGCHC 1 cut(s) 819
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 6 cut(s) 244, 269, 355, 427, 437, 678
MluNI TGGCCA 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 3 cut(s) 27, 607, 774
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
MseI TTAA 4 cut(s) 363, 543, 651, 791
Msp20I TGGCCA 1 cut(s) 10
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 1 cut(s) 41
NcoI CCATGG 1 cut(s) 5
NdeI CATATG 1 cut(s) 628
NdeII GATC 5 cut(s) 92, 309, 498, 616, 832
NlaIII CATG 3 cut(s) 9, 253, 798
NspI RCATGY 1 cut(s) 798
PfeI GAWTC 5 cut(s) 56, 153, 320, 598, 841
PkrI GCNGC 3 cut(s) 38, 147, 645
Ple19I CGATCG 1 cut(s) 835
Ppu21I YACGTR 1 cut(s) 737
PshBI ATTAAT 1 cut(s) 363
PsiI TTATAA 1 cut(s) 672
PspPI GGNCC 2 cut(s) 38, 527
PsuI RGATCY 2 cut(s) 92, 616
PvuI CGATCG 1 cut(s) 835
RsaI GTAC 3 cut(s) 62, 341, 490
RsaNI GTAC 3 cut(s) 61, 340, 489
SaqAI TTAA 4 cut(s) 363, 543, 651, 791
SatI GCNGC 3 cut(s) 37, 146, 644
Sau3AI GATC 5 cut(s) 92, 309, 498, 616, 832
Sau96I GGNCC 2 cut(s) 38, 527
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 819
SfaNI GCATC 1 cut(s) 594
SinI GGWCC 1 cut(s) 527
Sse9I AATT 6 cut(s) 244, 269, 355, 427, 437, 678
SsiI CCGC 3 cut(s) 36, 234, 752
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 572
TaiI ACGT 2 cut(s) 345, 739
TaqI TCGA 4 cut(s) 259, 501, 831, 835
TasI AATT 6 cut(s) 244, 269, 355, 427, 437, 678
TatI WGTACW 1 cut(s) 488
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 5 cut(s) 56, 153, 320, 598, 841
Tru1I TTAA 4 cut(s) 363, 543, 651, 791
Tru9I TTAA 4 cut(s) 363, 543, 651, 791
TscAI CASTG 1 cut(s) 520
TseI GCWGC 2 cut(s) 145, 643
TspDTI ATGAA 5 cut(s) 212, 266, 305, 365, 432
TspRI CASTG 1 cut(s) 520
VpaK11BI GGWCC 1 cut(s) 527
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 2 cut(s) 269, 355
XceI RCATGY 1 cut(s) 798
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.