Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004976.1

Orthogroup ID

OG0000908

Physical Location & Seq

Genomic Coordinates Reverse (-)

76916 .. 79605

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004976.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgatagtcactaaaaaatggcctgaaactgatgattctgttgaaaagtggtgcccagaaatacttgcagctaaggtacggcttccattttcttctttgaggcctatttttcgtgcaaaaactgtatcagatgcgccaccatttgacccgagcaatattgtgtcactgcagcttatgttcagcaagtttgaatatgatggaaaactcaatcctacttttgtggaaggggaatttaagctcccagtttcaagcataagggcatatctgaaagatcctataactcccaggtttgtacacgtaggctctgcaggagttactcggcctgagagacctggacttgatctaagtaaacaacctcctgctgtgcggttgaacaaggaattggattttatcctgactttcaaattgaagggggaggatttaattcgggaaagtggaattccatatacaattgtgaggccttgtgcattaactgaggagcctgctggagcagatctcatttttgaccaaggagacaatataacgggtaagatatcaagagaagaggttgctcaaatttgtgttgctgcattagaaagcccatacgctactggcaagacatttgaggttaaaagtgttataccatttagtgagccatttacagtagaccctgaaaatccaccccctgagaaggactacgatgtttactttaaaactttgaaggatggaattacaggaaaagaagtcttagaacaaaatcctgtaccagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIA30 NAD_binding_10

Protein Analysis

250

Amino Acids

27.87

Weight (kDa)

5.1

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18810 AT4G18810
fragaria_vesca	FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310
malus_domestica	MD00G1009300.v1.1 MD05G1295400.v1.1
prunus_persica	Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.4G066900_v2.0.a1 Prupe.4G066900_v2.0.a1 Prupe.7G223300_v2.0.a1
pyrus_communis	pycom05g27430
rosa_chinensis	RchiOBHm_Chr0c19g0500071 RchiOBHm_Chr2g0109861 RchiOBHm_Chr2g0109871 RchiOBHm_Chr5g0011641 RchiOBHm_Chr5g0011651 RchiOBHm_Chr5g0061601
rosa_laevigata	RLG00000031851
rosa_multiflora	Rmu_sc0001886.1_g000003 Rmu_sc0003291.1_g000002 Rmu_sc0004507.1_g000043 Rmu_sc0004976.1_g000017 Rmu_sc0009001.1_g000017
rosa_roxburghii	Rroxscaffold_1G00064860 Rroxscaffold_2G00134770 Rroxscaffold_5G00347910 Rroxscaffold_6G00417970
rosa_rugosa	Rorug02G0325700 Rorug04G0458200
rosa_samantha	Rh2AG008200 Rh2CG217400 Rh4AG096400 Rh4CG105400 Rh4DG067600 Rh5AG090000 Rh5AG331600 Rh5CG099300 Rh5DG085400 Rh7AG398700
rosa_wichuraiana	Rw1G004630 Rw3G022100 Rw3G027770 Rw5G007830 Rw5G021990 Rw5G048270 Rw6G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	3 cut(s)	230, 438, 555
AfaI	GTAC	3 cut(s)	78, 294, 744
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflIII	ACRYGT	1 cut(s)	295
AgsI	TTSAA	7 cut(s)	44, 191, 249, 373, 403, 409, 700
AjnI	CCWGG	2 cut(s)	284, 331
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	3 cut(s)	71, 172, 238
AluI	AGCT	3 cut(s)	71, 172, 238
Alw26I	GTCTC	2 cut(s)	322, 507
AlwI	GGATC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	4 cut(s)	20, 101, 320, 458
ApeKI	GCWGC	3 cut(s)	68, 169, 566
ApoI	RAATTY	3 cut(s)	230, 438, 555
AspLEI	GCGC	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	80, 181, 553
BccI	CCATC	2 cut(s)	191, 698
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	286, 333
BcoDI	GTCTC	2 cut(s)	322, 507
BfmI	CTRYAG	2 cut(s)	167, 306
BglII	AGATCT	1 cut(s)	493
BisI	GCNGC	3 cut(s)	69, 170, 567
BlsI	GCNGC	3 cut(s)	70, 171, 568
Bme1390I	CCNGG	2 cut(s)	286, 333
BmeT110I	CYCGRG	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	53, 480
BmrFI	CCNGG	2 cut(s)	286, 333
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	480, 512
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	2 cut(s)	284, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	3 cut(s)	242, 595, 746
BseBI	CCWGG	2 cut(s)	286, 333
BseDI	CCNNGG	2 cut(s)	284, 508
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMII	CTCAG	3 cut(s)	315, 465, 657
BseNI	ACTGG	3 cut(s)	242, 595, 746
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	80, 181, 553
BshFI	GGCC	4 cut(s)	22, 103, 322, 460
BshNI	GGYRCC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	2 cut(s)	322, 507
BsnI	GGCC	4 cut(s)	22, 103, 322, 460
Bso31I	GGTCTC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	271, 340, 493
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	4 cut(s)	22, 103, 322, 460
BspCNI	CTCAG	3 cut(s)	316, 466, 658
BspLI	GGNNCC	2 cut(s)	53, 480
BspMAI	CTGCAG	2 cut(s)	171, 310
BspPI	GGATC	1 cut(s)	266
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	322
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	3 cut(s)	242, 595, 746
BssECI	CCNNGG	2 cut(s)	284, 508
BssMI	GATC	3 cut(s)	271, 340, 493
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	2 cut(s)	286, 333
Bst4CI	ACNGT	2 cut(s)	124, 643
Bst6I	CTCTTC	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	292
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	6 cut(s)	72, 324, 344, 474, 666, 727
BstF5I	GGATG	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	3 cut(s)	274, 343, 496
BstMAI	GTCTC	2 cut(s)	322, 507
BstMBI	GATC	3 cut(s)	271, 340, 493
BstNI	CCWGG	2 cut(s)	286, 333
BstSCI	CCNGG	2 cut(s)	284, 331
BstSFI	CTRYAG	2 cut(s)	167, 306
BstSLI	GKGCMC	1 cut(s)	56
BstV1I	GCAGC	3 cut(s)	80, 181, 553
BstX2I	RGATCY	2 cut(s)	271, 493
BstYI	RGATCY	2 cut(s)	271, 493
BsuRI	GGCC	4 cut(s)	22, 103, 322, 460
BtsCI	GGATG	1 cut(s)	709
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	483
CfoI	GCGC	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	77, 293, 743
CviQI	GTAC	3 cut(s)	77, 293, 743
DdeI	CTNAG	6 cut(s)	72, 324, 344, 474, 666, 727
DpnI	GATC	3 cut(s)	273, 342, 495
DpnII	GATC	3 cut(s)	271, 340, 493
DraI	TTTAAA	1 cut(s)	691
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco130I	CCWWGG	1 cut(s)	508
Eco147I	AGGCCT	2 cut(s)	103, 460
Eco31I	GGTCTC	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	284, 331
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	3 cut(s)	69, 170, 567
FokI	GGATG	1 cut(s)	716
Fsp4HI	GCNGC	3 cut(s)	69, 170, 567
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	69, 170, 567
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	4 cut(s)	22, 103, 322, 460
HhaI	GCGC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	35
Hpy166II	GTNNAC	4 cut(s)	295, 350, 646, 685
Hpy188I	TCNGA	2 cut(s)	130, 267
Hpy188III	TCNNGA	3 cut(s)	394, 428, 537
Hpy8I	GTNNAC	4 cut(s)	295, 350, 646, 685
HpyAV	CCTTC	4 cut(s)	218, 403, 664, 694
HpyCH4III	ACNGT	2 cut(s)	124, 643
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	6 cut(s)	68, 116, 169, 308, 467, 569
HpyF3I	CTNAG	6 cut(s)	72, 324, 344, 474, 666, 727
HpySE526I	ACGT	1 cut(s)	297
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	271, 340, 493
LmnI	GCTCC	3 cut(s)	243, 478, 488
Lsp1109I	GCAGC	3 cut(s)	80, 181, 553
LweI	GCATC	1 cut(s)	121
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	7, 162, 313
MalI	GATC	3 cut(s)	273, 342, 495
MboI	GATC	3 cut(s)	271, 340, 493
MboII	GAAGA	2 cut(s)	84, 554
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	2 cut(s)	271, 493
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	8 cut(s)	230, 380, 404, 423, 438, 450, 555, 708
MnlI	CCTC	7 cut(s)	93, 366, 409, 450, 469, 538, 598
MseI	TTAA	5 cut(s)	234, 422, 470, 609, 690
MspR9I	CCNGG	2 cut(s)	286, 333
MunI	CAATTG	1 cut(s)	450
MvaI	CCWGG	2 cut(s)	286, 333
NdeII	GATC	3 cut(s)	271, 340, 493
NlaIV	GGNNCC	2 cut(s)	53, 480
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	2 cut(s)	7, 162
PceI	AGGCCT	2 cut(s)	103, 460
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	70, 171, 568
Ppu21I	YACGTR	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	284, 331
PspGI	CCWGG	2 cut(s)	284, 331
PspN4I	GGNNCC	2 cut(s)	53, 480
PstI	CTGCAG	2 cut(s)	171, 310
PsuI	RGATCY	2 cut(s)	271, 493
RsaI	GTAC	3 cut(s)	78, 294, 744
RsaNI	GTAC	3 cut(s)	77, 293, 743
SaqAI	TTAA	5 cut(s)	234, 422, 470, 609, 690
SatI	GCNGC	3 cut(s)	69, 170, 567
Sau3AI	GATC	3 cut(s)	271, 340, 493
ScrFI	CCNGG	2 cut(s)	286, 333
SduI	GDGCHC	1 cut(s)	56
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	2 cut(s)	167, 306
Sse9I	AATT	8 cut(s)	230, 380, 404, 423, 438, 450, 555, 708
SseBI	AGGCCT	2 cut(s)	103, 460
SsiI	CCGC	1 cut(s)	367
SspI	AATATT	1 cut(s)	157
StuI	AGGCCT	2 cut(s)	103, 460
StyD4I	CCNGG	2 cut(s)	284, 331
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	2 cut(s)	124, 643
TaiI	ACGT	1 cut(s)	300
TasI	AATT	8 cut(s)	230, 380, 404, 423, 438, 450, 555, 708
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	5 cut(s)	234, 422, 470, 609, 690
Tru9I	TTAA	5 cut(s)	234, 422, 470, 609, 690
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	2 cut(s)	7, 162
TseI	GCWGC	3 cut(s)	68, 169, 566
Tsp45I	GTSAC	2 cut(s)	7, 162
TspRI	CASTG	1 cut(s)	171
XapI	RAATTY	3 cut(s)	230, 438, 555
XmiI	GTMKAC	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.