RchiOBHm_Chr2g0109861

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000908
Physical Location & Seq
Forward (+)
21208589 .. 21209593
1005 bp
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UTR
Exon/CDS
Intron
PRQ48363

Sequence Viewer

Length: 363 bp
ATGTCTCCTTTAGGAGTTGTTTCCACTGCAAATAACGGTGGGTTTACAAGCATCAGAACAAAGAATCTATCAACACCTGAGGATCTCTCTGCATATGATGGTTTAGAGCTGCGCCTTAAAGGTGATGGTCGTCGTTATAAACTAATTGTTCGGACAAGTGGTGATTGGGATACTGTTGGTTACACAGCAGGCTTTGACACTGTAAAAGACCAGTGGCAGACAGTACGGCTTCCATTTTCTTCTTTGAGGCCTATTTTTCGTGCAAAAACTGTATCAGATGCGCCACCATTTGACCCGAGCAATATTGTGTCACTGCAGGCAATTTTCTACTGCCACTTTTTCTCACTCATTCTTTCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CIA30 NAD_binding_10

Protein Analysis

120

Amino Acids

13.32

Weight (kDa)

8.85

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 5 - 106 6.2e-31 Complex I intermediate-associated protein 30 (CIA30)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AclWI GGATC 1 cut(s) 90
AfaI GTAC 1 cut(s) 225
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 295
AoxI GGCC 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 109
AspLEI GCGC 2 cut(s) 114, 283
AsuHPI GGTGA 2 cut(s) 134, 173
AvaI CYCGRG 1 cut(s) 295
AxyI CCTNAGG 1 cut(s) 78
BbvI GCAGC 1 cut(s) 96
BccI CCATC 2 cut(s) 92, 119
BceAI ACGGC 1 cut(s) 242
BciVI GTATCC 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 314
BfuI GTATCC 1 cut(s) 163
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BmeT110I CYCGRG 1 cut(s) 295
BmsI GCATC 2 cut(s) 60, 268
BplI GAGNNNNNCTC 2 cut(s) 71, 103
Bse1I ACTGG 1 cut(s) 211
Bse21I CCTNAGG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 96
BshFI GGCC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 250
BsoBI CYCGRG 1 cut(s) 295
Bsp143I GATC 1 cut(s) 82
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 318
BspPI GGATC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 211
BssMI GATC 1 cut(s) 82
Bst4CI ACNGT 5 cut(s) 38, 175, 202, 223, 271
BstC8I GCNNGC 2 cut(s) 190, 318
BstDEI CTNAG 1 cut(s) 78
BstHHI GCGC 2 cut(s) 114, 283
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 78
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 250
BtsI GCAGTG 2 cut(s) 24, 311
BtsIMutI CAGTG 4 cut(s) 24, 198, 218, 311
Cac8I GCNNGC 2 cut(s) 190, 318
CfoI GCGC 2 cut(s) 114, 283
Csp6I GTAC 1 cut(s) 224
CviJI RGCY 4 cut(s) 109, 192, 229, 250
CviKI_1 RGCY 4 cut(s) 109, 192, 229, 250
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 250
Eco81I CCTNAGG 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 295
FaiI YATR 3 cut(s) 94, 96, 138
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
GlaI GCGC 2 cut(s) 113, 282
GluI GCNGC 1 cut(s) 110
HaeIII GGCC 1 cut(s) 250
HhaI GCGC 2 cut(s) 114, 283
Hin6I GCGC 2 cut(s) 112, 281
HinP1I GCGC 2 cut(s) 112, 281
HinfI GANTC 1 cut(s) 64
HphI GGTGA 2 cut(s) 134, 173
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 3 cut(s) 56, 153, 277
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 1 cut(s) 135
HpyCH4III ACNGT 5 cut(s) 38, 175, 202, 223, 271
HpyCH4V TGCA 4 cut(s) 29, 92, 263, 316
HpyF3I CTNAG 1 cut(s) 78
HspAI GCGC 2 cut(s) 112, 281
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 4 cut(s) 90, 174, 224, 302
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 2 cut(s) 60, 268
MaeIII GTNAC 2 cut(s) 179, 309
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 1 cut(s) 231
MflI RGATCY 1 cut(s) 82
MluCI AATT 2 cut(s) 144, 321
MnlI CCTC 2 cut(s) 73, 240
MseI TTAA 2 cut(s) 117, 361
NdeI CATATG 1 cut(s) 94
NdeII GATC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 309
PceI AGGCCT 1 cut(s) 250
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 111
PsiI TTATAA 1 cut(s) 138
PstI CTGCAG 1 cut(s) 318
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 117, 361
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 1 cut(s) 82
SetI ASST 3 cut(s) 79, 111, 124
SfaNI GCATC 2 cut(s) 60, 268
SfcI CTRYAG 1 cut(s) 314
SgeI CNNG 9 cut(s) 60, 89, 168, 201, 223, 272, 307, 309, 329
Sse9I AATT 2 cut(s) 144, 321
SseBI AGGCCT 1 cut(s) 250
SspI AATATT 1 cut(s) 304
StuI AGGCCT 1 cut(s) 250
TaaI ACNGT 5 cut(s) 38, 175, 202, 223, 271
TasI AATT 2 cut(s) 144, 321
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 117, 361
Tru9I TTAA 2 cut(s) 117, 361
TscAI CASTG 4 cut(s) 31, 205, 218, 318
TseFI GTSAC 1 cut(s) 309
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 309
TspRI CASTG 4 cut(s) 31, 205, 218, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.