Rroxscaffold_5G00347910

NAD(P)H-binding

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
19626590 .. 19634263
7674 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00347910.1

Sequence Viewer

Length: 396 bp
ATGGAGTTGAGGCATAGTTTTCACTGCTTCCGCATTATCAAGGGAGATTTGCCTGAAAAGGTGGAGTACGTTGGGATGAAAAATTTGATTAATGTTCTAAAACAAAGTGTTGGACTTCAAAATGGAAAGCTACTATTTGGATATGAAGGTAATAATTATAGGGAATTGACTTGGGGAGCTTTAGATGATGTTGTGATGGGTGGAGTGAGTGAAAGTACATTTCTGATTGACCCAAATGGCAGTGAAAATGGTGGACCAACTGGACTTTTTAAAGAAGAAAAGAGAAAACGGCACCGCATCTCCCACCGAGGACATCGAACAGATAGCATTAGCACCTTAGCCCGTCCGGCTACACCCATCTCATGTGGACTAGGCAAGGAGCCATCATCGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.54

Weight (kDa)

8.98

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 291
AciI CCGC 2 cut(s) 31, 295
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 2 cut(s) 68, 217
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 2 cut(s) 130, 179
AluI AGCT 2 cut(s) 130, 179
ApoI RAATTY 1 cut(s) 82
AseI ATTAAT 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 254
AvaII GGWCC 1 cut(s) 254
BanI GGYRCC 1 cut(s) 291
BccI CCATC 3 cut(s) 190, 365, 391
BceAI ACGGC 1 cut(s) 305
BfaI CTAG 1 cut(s) 371
BglI GCCNNNNNGGC 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 293, 381
BmsI GCATC 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bse1I ACTGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 265
BshNI GGYRCC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 347
BspACI CCGC 2 cut(s) 31, 295
BspLI GGNNCC 2 cut(s) 293, 381
BspT107I GGYRCC 1 cut(s) 291
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 337
BstF5I GGATG 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 347
BtsCI GGATG 1 cut(s) 81
BtsI GCAGTG 2 cut(s) 22, 247
BtsIMutI CAGTG 2 cut(s) 22, 247
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 67, 216
CviAII CATG 1 cut(s) 363
CviJI RGCY 5 cut(s) 130, 179, 341, 350, 382
CviKI_1 RGCY 5 cut(s) 130, 179, 341, 350, 382
CviQI GTAC 2 cut(s) 67, 216
DdeI CTNAG 1 cut(s) 337
DraI TTTAAA 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 254
FaeI CATG 1 cut(s) 366
FaiI YATR 4 cut(s) 15, 144, 159, 364
FatI CATG 1 cut(s) 362
FokI GGATG 1 cut(s) 88
FspBI CTAG 1 cut(s) 371
HapII CCGG 1 cut(s) 347
Hin1II CATG 1 cut(s) 366
HpaII CCGG 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 254, 368
Hpy188I TCNGA 1 cut(s) 225
Hpy8I GTNNAC 2 cut(s) 254, 368
HpyAV CCTTC 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 1 cut(s) 337
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 1 cut(s) 366
LmnI GCTCC 2 cut(s) 176, 379
LpnPI CCDG 3 cut(s) 66, 246, 360
LweI GCATC 1 cut(s) 306
MaeI CTAG 1 cut(s) 371
MaeII ACGT 1 cut(s) 69
MboII GAAGA 1 cut(s) 287
MluCI AATT 3 cut(s) 82, 154, 164
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 2 cut(s) 3, 302
MseI TTAA 2 cut(s) 90, 270
MslI CAYNNNNRTG 1 cut(s) 391
MspI CCGG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 347
NlaIII CATG 1 cut(s) 366
NlaIV GGNNCC 2 cut(s) 293, 381
PshBI ATTAAT 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 293, 381
PspPI GGNCC 1 cut(s) 254
RsaI GTAC 2 cut(s) 68, 217
RsaNI GTAC 2 cut(s) 67, 216
RseI CAYNNNNRTG 1 cut(s) 391
SaqAI TTAA 2 cut(s) 90, 270
Sau96I GGNCC 1 cut(s) 254
SetI ASST 6 cut(s) 63, 72, 132, 151, 181, 338
SfaNI GCATC 1 cut(s) 306
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 391
Sse9I AATT 3 cut(s) 82, 154, 164
SsiI CCGC 2 cut(s) 31, 295
SspMI CTAG 1 cut(s) 371
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 316
TasI AATT 3 cut(s) 82, 154, 164
TatI WGTACW 1 cut(s) 215
Tru1I TTAA 2 cut(s) 90, 270
Tru9I TTAA 2 cut(s) 90, 270
TscAI CASTG 2 cut(s) 29, 247
TspDTI ATGAA 2 cut(s) 92, 159
TspRI CASTG 2 cut(s) 29, 247
VpaK11BI GGWCC 1 cut(s) 254
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 1 cut(s) 82
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.