Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000908

Physical Location & Seq

Genomic Coordinates Reverse (-)

10102491 .. 10106577

Gene Structure 4087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG067600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCTTTTTTTTTTTCTTTCTTTTTTTTTTATCTTAAGCAGGTTTTTGACTTTTAAATTAATGTGCTGCAGGGTATCAAGTTCTTTGAACCAGAGGTGGGAAGAATTGATTGCTTACATTCTGTATCTGGAGTCAGAATTTTTCTTTATCAAGGGAGATTCGCCTAAAAAGGTGGAGTACGTTGGGATGAAAAATTTGATTAATGCTCTAAAACAAAGTGTTGGACTTCAAAATGGAAAGCTACTATTTGGATATGAAGGTAATAATTATAGGGAATTGACTTGGGGAGCTTTAGATGATGTTGTGATGGGTGGAGTGAGTGAAAGTACATTTCTGATCGACCCAAATGGCAGTGAAAATGGTGGACCAACTGGACTTTTTAAAGGAGTTGTTTCCACTGCAAATAACGGTGGGTTTACAAGCATCAGAACAAAGAATCACTTGCTAGGTGGTTTGAGCTGCCTCAGCCGAGCTGCCGGGCTTCACACTCACCAGAGGAACAAGAGAGCCAGACTTTTCGACTTTCAGAGATCTGAGACAGATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIA30 NAD_binding_10

Protein Analysis

182

Amino Acids

20.45

Weight (kDa)

9.03

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CIA30	PF08547	93 - 146	2.5e-11	Complex I intermediate-associated protein 30 (CIA30)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18810 AT4G18810
fragaria_vesca	FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310
malus_domestica	MD00G1009300.v1.1 MD05G1295400.v1.1
prunus_persica	Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.4G066900_v2.0.a1 Prupe.4G066900_v2.0.a1 Prupe.7G223300_v2.0.a1
pyrus_communis	pycom05g27430
rosa_chinensis	RchiOBHm_Chr0c19g0500071 RchiOBHm_Chr2g0109861 RchiOBHm_Chr2g0109871 RchiOBHm_Chr5g0011641 RchiOBHm_Chr5g0011651 RchiOBHm_Chr5g0061601
rosa_laevigata	RLG00000031851
rosa_multiflora	Rmu_sc0001886.1_g000003 Rmu_sc0003291.1_g000002 Rmu_sc0004507.1_g000043 Rmu_sc0004976.1_g000017 Rmu_sc0009001.1_g000017
rosa_roxburghii	Rroxscaffold_1G00064860 Rroxscaffold_2G00134770 Rroxscaffold_5G00347910 Rroxscaffold_6G00417970
rosa_rugosa	Rorug02G0325700 Rorug04G0458200
rosa_samantha	Rh2AG008200 Rh2CG217400 Rh4AG096400 Rh4CG105400 Rh4DG067600 Rh5AG090000 Rh5AG331600 Rh5CG099300 Rh5DG085400 Rh7AG398700
rosa_wichuraiana	Rw1G004630 Rw3G022100 Rw3G027770 Rw5G007830 Rw5G021990 Rw5G048270 Rw6G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	137, 193
AfaI	GTAC	2 cut(s)	179, 328
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflII	CTTAAG	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	88, 230
AluBI	AGCT	4 cut(s)	241, 290, 459, 473
AluI	AGCT	4 cut(s)	241, 290, 459, 473
Alw26I	GTCTC	1 cut(s)	530
ApeKI	GCWGC	3 cut(s)	66, 459, 473
ApoI	RAATTY	2 cut(s)	137, 193
AseI	ATTAAT	2 cut(s)	59, 201
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	365
BbvCI	CCTCAGC	1 cut(s)	464
BbvI	GCAGC	3 cut(s)	53, 446, 460
BccI	CCATC	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	67
BfrI	CTTAAG	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	30
BglII	AGATCT	1 cut(s)	530
BisI	GCNGC	3 cut(s)	67, 460, 474
BlsI	GCNGC	3 cut(s)	68, 461, 475
Bme1390I	CCNGG	1 cut(s)	478
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	478
BmsI	GCATC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	2 cut(s)	478, 525
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	53, 446, 460
BsiSI	CCGG	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	530
Bsp143I	GATC	2 cut(s)	336, 530
BspCNI	CTCAG	2 cut(s)	477, 526
BspMAI	CTGCAG	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	30
BspTI	CTTAAG	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	376
BssMI	GATC	2 cut(s)	336, 530
Bst4CI	ACNGT	1 cut(s)	410
BstAFI	CTTAAG	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	464, 534
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	339, 533
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	2 cut(s)	336, 530
BstMWI	GCNNNNNNNGC	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	476
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	3 cut(s)	53, 446, 460
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BtsCI	GGATG	1 cut(s)	192
BtsI	GCAGTG	2 cut(s)	358, 396
BtsIMutI	CAGTG	2 cut(s)	358, 396
BveI	ACCTGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	178, 327
CviJI	RGCY	7 cut(s)	241, 290, 459, 468, 473, 481, 509
CviKI_1	RGCY	7 cut(s)	241, 290, 459, 468, 473, 481, 509
CviQI	GTAC	2 cut(s)	178, 327
DdeI	CTNAG	2 cut(s)	464, 534
DpnI	GATC	2 cut(s)	338, 532
DpnII	GATC	2 cut(s)	336, 530
DraI	TTTAAA	2 cut(s)	55, 382
Eco47I	GGWCC	1 cut(s)	365
FaiI	YATR	2 cut(s)	255, 270
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
Fnu4HI	GCNGC	3 cut(s)	67, 460, 474
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	3 cut(s)	67, 460, 474
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	3 cut(s)	67, 460, 474
GsuI	CTGGAG	1 cut(s)	149
HapII	CCGG	1 cut(s)	477
HinfI	GANTC	4 cut(s)	131, 158, 436, 542
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	2 cut(s)	365, 417
Hpy188I	TCNGA	5 cut(s)	136, 336, 428, 528, 535
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	2 cut(s)	365, 417
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	69, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	465
HpyF3I	CTNAG	2 cut(s)	464, 534
HpySE526I	ACGT	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	336, 530
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	8 cut(s)	25, 55, 104, 113, 357, 490, 506, 523
Lsp1109I	GCAGC	3 cut(s)	53, 446, 460
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	180
MalI	GATC	2 cut(s)	338, 532
MboI	GATC	2 cut(s)	336, 530
MboII	GAAGA	1 cut(s)	113
MflI	RGATCY	1 cut(s)	530
MluCI	AATT	6 cut(s)	56, 104, 137, 193, 265, 275
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	3 cut(s)	87, 473, 489
MseI	TTAA	5 cut(s)	35, 54, 59, 201, 381
MspCI	CTTAAG	1 cut(s)	34
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	478
MwoI	GCNNNNNNNGC	1 cut(s)	465
NciI	CCSGG	1 cut(s)	478
NdeII	GATC	2 cut(s)	336, 530
NmeAIII	GCCGAG	1 cut(s)	494
PfeI	GAWTC	3 cut(s)	158, 436, 542
PkrI	GCNGC	3 cut(s)	68, 461, 475
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PshBI	ATTAAT	2 cut(s)	59, 201
PspPI	GGNCC	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	2 cut(s)	179, 328
RsaNI	GTAC	2 cut(s)	178, 327
SaqAI	TTAA	5 cut(s)	35, 54, 59, 201, 381
SatI	GCNGC	3 cut(s)	67, 460, 474
Sau3AI	GATC	2 cut(s)	336, 530
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	478
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	6 cut(s)	56, 104, 137, 193, 265, 275
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	476
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	339, 519
TasI	AATT	6 cut(s)	56, 104, 137, 193, 265, 275
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	3 cut(s)	158, 436, 542
Tru1I	TTAA	5 cut(s)	35, 54, 59, 201, 381
Tru9I	TTAA	5 cut(s)	35, 54, 59, 201, 381
TscAI	CASTG	2 cut(s)	358, 403
TseI	GCWGC	3 cut(s)	66, 459, 473
TspDTI	ATGAA	2 cut(s)	203, 270
TspRI	CASTG	2 cut(s)	358, 403
Vha464I	CTTAAG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	365
VspI	ATTAAT	2 cut(s)	59, 201
XapI	RAATTY	2 cut(s)	137, 193
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.