Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000908

Physical Location & Seq

Genomic Coordinates Reverse (-)

52885299 .. 52887706

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG331600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAAAATTTGATTAATGCTCTAAAACAAAGTGTTGGACTTCAAAATGGAAAGCTACTATTTGGATATGAAGGTAATAATTATAGGGAATTGACTTGGGGAGCTTTAGATGATGTTGTGATGGGTGGAGTGAGTGAAAGTACATTTCTGATCGACCCAAATGACAGTGAAAATGGTGGACCAACTGGACTTTTTAAAGGAGTTGTTTTTACTACAAATAACGGTGGGTTTACAAGCATCAGAACAAAGAATCTATCAACTCCTGAGGATCTCTCTGCATATGATGGTATAGAGCTGCGCCTTAAAGGTGATGGTCGTCGTTATAAACTAATTCTTCAGACAAGTGGTGATTGGGATACTGTTGGTTACACAGCAGGCTTTGACACTGTAAAAGACCAGGGGCAGACAGTGAGTATCACAATGGTCCTCTCAATTTTTCTCTGGCCAAATCAAGGTACAATTTTTTTCACTTATTGTTTCAGTTTTCATATTCTGCTTGATCTATTTAGGGTTTTTCAATTGTGGGAAGGTTTCTTGTCTGGTTTGCCTAGTTTGTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIA30 NAD_binding_10

Protein Analysis

187

Amino Acids

20.7

Weight (kDa)

4.79

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CIA30	PF08547	31 - 141	8.5e-29	Complex I intermediate-associated protein 30 (CIA30)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18810 AT4G18810
fragaria_vesca	FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310
malus_domestica	MD00G1009300.v1.1 MD05G1295400.v1.1
prunus_persica	Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.4G066900_v2.0.a1 Prupe.4G066900_v2.0.a1 Prupe.7G223300_v2.0.a1
pyrus_communis	pycom05g27430
rosa_chinensis	RchiOBHm_Chr0c19g0500071 RchiOBHm_Chr2g0109861 RchiOBHm_Chr2g0109871 RchiOBHm_Chr5g0011641 RchiOBHm_Chr5g0011651 RchiOBHm_Chr5g0061601
rosa_laevigata	RLG00000031851
rosa_multiflora	Rmu_sc0001886.1_g000003 Rmu_sc0003291.1_g000002 Rmu_sc0004507.1_g000043 Rmu_sc0004976.1_g000017 Rmu_sc0009001.1_g000017
rosa_roxburghii	Rroxscaffold_1G00064860 Rroxscaffold_2G00134770 Rroxscaffold_5G00347910 Rroxscaffold_6G00417970
rosa_rugosa	Rorug02G0325700 Rorug04G0458200
rosa_samantha	Rh2AG008200 Rh2CG217400 Rh4AG096400 Rh4CG105400 Rh4DG067600 Rh5AG090000 Rh5AG331600 Rh5CG099300 Rh5DG085400 Rh7AG398700
rosa_wichuraiana	Rw1G004630 Rw3G022100 Rw3G027770 Rw5G007830 Rw5G021990 Rw5G048270 Rw6G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	2 cut(s)	142, 457
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	44, 518
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	3 cut(s)	55, 104, 295
AluI	AGCT	3 cut(s)	55, 104, 295
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	1 cut(s)	295
ApoI	RAATTY	1 cut(s)	7
AseI	ATTAAT	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	179, 424
AsuHPI	GGTGA	2 cut(s)	320, 359
AvaII	GGWCC	2 cut(s)	179, 424
AxyI	CCTNAGG	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	3 cut(s)	115, 278, 305
BciT130I	CCWGG	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	549
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	2 cut(s)	179, 424
BmgT120I	GGNCC	2 cut(s)	179, 424
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	1 cut(s)	246
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BsaJI	CCNNGG	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	282
BshFI	GGCC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	452
BsnI	GGCC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	150, 268, 499
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	3 cut(s)	150, 268, 499
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	5 cut(s)	167, 224, 361, 388, 409
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	3 cut(s)	153, 271, 502
BstMBI	GATC	3 cut(s)	150, 268, 499
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
Bsu36I	CCTNAGG	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	445
BtsIMutI	CAGTG	3 cut(s)	172, 384, 414
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	179, 424
Csp6I	GTAC	2 cut(s)	141, 456
CviJI	RGCY	5 cut(s)	55, 104, 295, 378, 445
CviKI_1	RGCY	5 cut(s)	55, 104, 295, 378, 445
CviQI	GTAC	2 cut(s)	141, 456
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	3 cut(s)	152, 270, 501
DpnII	GATC	3 cut(s)	150, 268, 499
DraI	TTTAAA	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	443
Eco47I	GGWCC	2 cut(s)	179, 424
Eco57I	CTGAAG	1 cut(s)	320
Eco81I	CCTNAGG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	396
FaiI	YATR	7 cut(s)	69, 84, 280, 282, 290, 324, 489
FauNDI	CATATG	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	445
HhaI	GCGC	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	2 cut(s)	320, 359
Hpy166II	GTNNAC	2 cut(s)	179, 231
Hpy188I	TCNGA	3 cut(s)	150, 242, 339
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	179, 231
Hpy99I	CGWCG	1 cut(s)	321
HpyAV	CCTTC	2 cut(s)	65, 521
HpyCH4III	ACNGT	5 cut(s)	167, 224, 361, 388, 409
HpyCH4V	TGCA	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	264
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	150, 268, 499
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	7 cut(s)	171, 276, 360, 383, 410, 427, 525
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	549
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	152, 270, 501
MboI	GATC	3 cut(s)	150, 268, 499
MboII	GAAGA	1 cut(s)	326
MfeI	CAATTG	1 cut(s)	518
MflI	RGATCY	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	445
MluCI	AATT	7 cut(s)	7, 79, 89, 330, 432, 459, 518
MluNI	TGGCCA	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	2 cut(s)	259, 437
Mox20I	TGGCCA	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	445
MseI	TTAA	3 cut(s)	15, 195, 303
Msp20I	TGGCCA	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	398
MunI	CAATTG	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	398
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	3 cut(s)	150, 268, 499
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	297
PshBI	ATTAAT	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspPI	GGNCC	2 cut(s)	179, 424
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	2 cut(s)	142, 457
RsaNI	GTAC	2 cut(s)	141, 456
SaqAI	TTAA	3 cut(s)	15, 195, 303
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	3 cut(s)	150, 268, 499
Sau96I	GGNCC	2 cut(s)	179, 424
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	7 cut(s)	57, 76, 106, 297, 310, 457, 532
SfaNI	GCATC	1 cut(s)	246
SinI	GGWCC	2 cut(s)	179, 424
Sse9I	AATT	7 cut(s)	7, 79, 89, 330, 432, 459, 518
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	396
TaaI	ACNGT	5 cut(s)	167, 224, 361, 388, 409
TaqI	TCGA	1 cut(s)	153
TasI	AATT	7 cut(s)	7, 79, 89, 330, 432, 459, 518
TatI	WGTACW	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	3 cut(s)	15, 195, 303
Tru9I	TTAA	3 cut(s)	15, 195, 303
TscAI	CASTG	3 cut(s)	172, 391, 414
TseI	GCWGC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	17, 84, 476
TspRI	CASTG	3 cut(s)	172, 391, 414
VpaK11BI	GGWCC	2 cut(s)	179, 424
VspI	ATTAAT	1 cut(s)	15
XapI	RAATTY	1 cut(s)	7
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.