Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000908

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAAAATTTGATTAATGCTCTAAAACAAAGTGTTGGACTTCAAAATGGAAAGCTACTATTTGGATATGAAGGTAATAATTATAGGGAATTGACTTGGGGAGCTTTAGATGATGTTGTGATGGGTGGAGTGAGTGAAAGTACATTTCTGATCGACCCAAATGGCAGTGAAAATGGTGGACCAACTGGACTTTTTAAAGGAGTTGTTTTTACTGCATATAACGGTGGGTTTACAAGCATCAGAACAAAGAATCTATCAACTCCTGAGGATCTCTCTGCATATGATGGTATAGAGCTGCGCCTTAAAGGTGATGGTCGTTGTTATAAACTAATTCTTCGGACAAGTGGTCATTGGGATACTGTTGGTTACACAGCAGGCTTTGACACCGTAAAAGACCAGTGGCAGACAGTGAGTATCACAATGGTCCTCTCAATTTTTCTCTGGCCAAATCAAGAATCACTTGCTAGGTGGTTTGAGCTGCCTCAGCCGAGCTGTCGGGCTTCACACTCACCAGAGGAACAAGAGAGCCAGACTTTTCGACTTTCAGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIA30 NAD_binding_10

Protein Analysis

184

Amino Acids

20.44

Weight (kDa)

5.06

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18810 AT4G18810
fragaria_vesca	FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310 FvH4_3g07310
malus_domestica	MD00G1009300.v1.1 MD05G1295400.v1.1
prunus_persica	Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.3G259500_v2.0.a1 Prupe.4G066900_v2.0.a1 Prupe.4G066900_v2.0.a1 Prupe.7G223300_v2.0.a1
pyrus_communis	pycom05g27430
rosa_chinensis	RchiOBHm_Chr0c19g0500071 RchiOBHm_Chr2g0109861 RchiOBHm_Chr2g0109871 RchiOBHm_Chr5g0011641 RchiOBHm_Chr5g0011651 RchiOBHm_Chr5g0061601
rosa_laevigata	RLG00000031851
rosa_multiflora	Rmu_sc0001886.1_g000003 Rmu_sc0003291.1_g000002 Rmu_sc0004507.1_g000043 Rmu_sc0004976.1_g000017 Rmu_sc0009001.1_g000017
rosa_roxburghii	Rroxscaffold_1G00064860 Rroxscaffold_2G00134770 Rroxscaffold_5G00347910 Rroxscaffold_6G00417970
rosa_rugosa	Rorug02G0325700 Rorug04G0458200
rosa_samantha	Rh2AG008200 Rh2CG217400 Rh4AG096400 Rh4CG105400 Rh4DG067600 Rh5AG090000 Rh5AG331600 Rh5CG099300 Rh5DG085400 Rh7AG398700
rosa_wichuraiana	Rw1G004630 Rw3G022100 Rw3G027770 Rw5G007830 Rw5G021990 Rw5G048270 Rw6G021670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	44
AhdI	GACNNNNNGTC	1 cut(s)	345
AluBI	AGCT	5 cut(s)	55, 104, 295, 478, 492
AluI	AGCT	5 cut(s)	55, 104, 295, 478, 492
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	2 cut(s)	295, 478
ApoI	RAATTY	1 cut(s)	7
AseI	ATTAAT	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	179, 424
AsuHPI	GGTGA	2 cut(s)	320, 501
AvaII	GGWCC	2 cut(s)	179, 424
AxyI	CCTNAGG	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	445
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	282, 465
BccI	CCATC	3 cut(s)	115, 278, 305
BciVI	GTATCC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	2 cut(s)	296, 479
BlsI	GCNGC	2 cut(s)	297, 480
Bme18I	GGWCC	2 cut(s)	179, 424
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmgT120I	GGNCC	2 cut(s)	179, 424
BmsI	GCATC	1 cut(s)	246
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
Bpu10I	CCTNAGC	1 cut(s)	483
Bse1I	ACTGG	2 cut(s)	190, 397
Bse21I	CCTNAGG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	255, 497
BseNI	ACTGG	2 cut(s)	190, 397
BseXI	GCAGC	2 cut(s)	282, 465
BshFI	GGCC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	150, 268, 549
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	2 cut(s)	256, 496
BspPI	GGATC	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	190, 397
BssMI	GATC	3 cut(s)	150, 268, 549
Bst4CI	ACNGT	4 cut(s)	224, 361, 388, 409
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	264, 483
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	3 cut(s)	153, 271, 552
BstMBI	GATC	3 cut(s)	150, 268, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstV1I	GCAGC	2 cut(s)	282, 465
BstX2I	RGATCY	2 cut(s)	268, 549
BstYI	RGATCY	2 cut(s)	268, 549
Bsu36I	CCTNAGG	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	445
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	3 cut(s)	172, 404, 414
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	179, 424
Csp6I	GTAC	1 cut(s)	141
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	2 cut(s)	264, 483
DpnI	GATC	3 cut(s)	152, 270, 551
DpnII	GATC	3 cut(s)	150, 268, 549
DraI	TTTAAA	1 cut(s)	196
DriI	GACNNNNNGTC	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	443
Eam1105I	GACNNNNNGTC	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	179, 424
Eco81I	CCTNAGG	1 cut(s)	264
FaiI	YATR	8 cut(s)	69, 84, 217, 219, 280, 282, 290, 324
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FauNDI	CATATG	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	296, 479
Fsp4HI	GCNGC	2 cut(s)	296, 479
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	2 cut(s)	296, 479
HaeIII	GGCC	1 cut(s)	445
HhaI	GCGC	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	250, 455
HphI	GGTGA	2 cut(s)	320, 501
Hpy166II	GTNNAC	2 cut(s)	179, 231
Hpy188I	TCNGA	5 cut(s)	150, 242, 339, 547, 554
Hpy188III	TCNNGA	2 cut(s)	263, 452
Hpy8I	GTNNAC	2 cut(s)	179, 231
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	4 cut(s)	224, 361, 388, 409
HpyCH4V	TGCA	2 cut(s)	215, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
HpyF3I	CTNAG	2 cut(s)	264, 483
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	150, 268, 549
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	7 cut(s)	171, 276, 360, 410, 427, 525, 542
Lsp1109I	GCAGC	2 cut(s)	282, 465
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	152, 270, 551
MboI	GATC	3 cut(s)	150, 268, 549
MboII	GAAGA	1 cut(s)	326
MflI	RGATCY	2 cut(s)	268, 549
MlsI	TGGCCA	1 cut(s)	445
MluCI	AATT	5 cut(s)	7, 79, 89, 330, 432
MluNI	TGGCCA	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	4 cut(s)	259, 437, 492, 508
Mox20I	TGGCCA	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	445
MseI	TTAA	3 cut(s)	15, 195, 303
Msp20I	TGGCCA	1 cut(s)	445
MwoI	GCNNNNNNNGC	1 cut(s)	484
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	3 cut(s)	150, 268, 549
NmeAIII	GCCGAG	1 cut(s)	513
PfeI	GAWTC	2 cut(s)	250, 455
PkrI	GCNGC	2 cut(s)	297, 480
PshBI	ATTAAT	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	179, 424
PsuI	RGATCY	2 cut(s)	268, 549
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	15, 195, 303
SatI	GCNGC	2 cut(s)	296, 479
Sau3AI	GATC	3 cut(s)	150, 268, 549
Sau96I	GGNCC	2 cut(s)	179, 424
SetI	ASST	8 cut(s)	57, 76, 106, 297, 310, 470, 480, 494
SfaNI	GCATC	1 cut(s)	246
SinI	GGWCC	2 cut(s)	179, 424
Sse9I	AATT	5 cut(s)	7, 79, 89, 330, 432
SspMI	CTAG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	224, 361, 388, 409
TaqI	TCGA	2 cut(s)	153, 538
TasI	AATT	5 cut(s)	7, 79, 89, 330, 432
TatI	WGTACW	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	250, 455
Tru1I	TTAA	3 cut(s)	15, 195, 303
Tru9I	TTAA	3 cut(s)	15, 195, 303
TscAI	CASTG	3 cut(s)	172, 404, 414
TseI	GCWGC	2 cut(s)	295, 478
TspDTI	ATGAA	2 cut(s)	17, 84
TspRI	CASTG	3 cut(s)	172, 404, 414
VpaK11BI	GGWCC	2 cut(s)	179, 424
VspI	ATTAAT	1 cut(s)	15
XapI	RAATTY	1 cut(s)	7
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.