Rh2CG217400

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000908
Physical Location & Seq
Forward (+)
21452374 .. 21456002
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG217400.1

Sequence Viewer

Length: 777 bp
ATGTATTTTCAATTGTTGTGTACGTGTGGAATCCTTCTCTCCAATAGAAGCTCGGTGTCATATAGCCTCACAATCACAGAGTTCGTTGGGGAAGTTCATCGAGTCCTTAGCATTTTCTTCCAGATTATGGGTATTGCTGGAGTTGTTTCCACTGCAAATAACGGTGGGTTTACAAGCATCAGAACAAAGAATCTATCAACACCTGAGGATCTCTCTGCATATGATGGTTTAGAGCTGCGCCTTAAAGGTGATGGTCGTCGTTATAAACTAATTGTTCGGACAAGTGGTGATTGGGATACTGTTGGTTACACAGCAGGCTTTGACACTGTAAAAGACCAGTGGCAGACAGTACGGCTTCCATTTTCTTCTTTGAGGCCTATTTTTCGTGCAAAAACTGTATCAGATGCGCCACCATTTGACCCGAGCAATATTGTGTCACTGCAGCTTATGTTCAGCAAGTTTGAATATGATGGAAAACTCAATCCTACTTTTGTGGAAGGGGAATTTAAGCTCCCAGTTTCAAGCATAAGGGCATATCTGAAAGATCCTATAACTCCCAGGTTTGTACACGTAGGCTCTGCAGGAGTTACTCGGCCTGAGAGACCTGGACTTGATCTAAGTAAACAACCTCCTGCTGTGCGGTTGAACAAGGAATTGGATTTTATCCTGACTTTCAAATTGAAGGTTTATCCTAAACTAATGCGAACTATTTGTTTACTGCATCTTAGTACTCTACTGCTGTTTACATGTCACAAACTGACTCTTGCAATTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CIA30 NAD_binding_10

Protein Analysis

258

Amino Acids

28.95

Weight (kDa)

9.51

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 45 - 172 1.1e-33 Complex I intermediate-associated protein 30 (CIA30)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccB7I CCANNNNNTGG 1 cut(s) 127
AciI CCGC 1 cut(s) 640
AclWI GGATC 2 cut(s) 216, 539
AcsI RAATTY 1 cut(s) 503
AfaI GTAC 4 cut(s) 22, 351, 567, 730
AfiI CCNNNNNNNGG 1 cut(s) 127
AflIII ACRYGT 3 cut(s) 23, 568, 746
AgsI TTSAA 6 cut(s) 11, 464, 522, 646, 676, 682
AjnI CCWGG 2 cut(s) 557, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 638, 670
AluBI AGCT 4 cut(s) 51, 235, 445, 511
AluI AGCT 4 cut(s) 51, 235, 445, 511
Alw26I GTCTC 1 cut(s) 595
AlwI GGATC 2 cut(s) 216, 539
Ama87I CYCGRG 1 cut(s) 421
AoxI GGCC 2 cut(s) 374, 593
ApeKI GCWGC 2 cut(s) 235, 442
ApoI RAATTY 1 cut(s) 503
AspLEI GCGC 2 cut(s) 240, 409
AsuHPI GGTGA 2 cut(s) 260, 299
AvaI CYCGRG 1 cut(s) 421
AxyI CCTNAGG 1 cut(s) 204
BbvI GCAGC 2 cut(s) 222, 454
BccI CCATC 3 cut(s) 218, 245, 464
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 2 cut(s) 559, 606
BciVI GTATCC 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 595
BfmI CTRYAG 2 cut(s) 440, 579
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 2 cut(s) 236, 443
BlsI GCNGC 2 cut(s) 237, 444
BmcAI AGTACT 1 cut(s) 730
Bme1390I CCNGG 2 cut(s) 559, 606
BmeT110I CYCGRG 1 cut(s) 421
BmrFI CCNGG 2 cut(s) 559, 606
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 3 cut(s) 186, 394, 730
BmuI ACTGGG 1 cut(s) 509
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 107
BsaAI YACGTR 2 cut(s) 24, 571
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 1 cut(s) 557
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 337, 515
Bse21I CCTNAGG 1 cut(s) 204
BseBI CCWGG 2 cut(s) 559, 606
BseDI CCNNGG 1 cut(s) 557
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 195, 588
BseNI ACTGG 2 cut(s) 337, 515
BseXI GCAGC 2 cut(s) 222, 454
BshFI GGCC 2 cut(s) 376, 595
BsiHKCI CYCGRG 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 595
BsnI GGCC 2 cut(s) 376, 595
Bso31I GGTCTC 1 cut(s) 595
BsoBI CYCGRG 1 cut(s) 421
Bsp1407I TGTACA 1 cut(s) 565
Bsp143I GATC 3 cut(s) 208, 544, 613
BspACI CCGC 1 cut(s) 640
BspANI GGCC 2 cut(s) 376, 595
BspCNI CTCAG 2 cut(s) 196, 589
BspMAI CTGCAG 2 cut(s) 444, 583
BspPI GGATC 2 cut(s) 216, 539
BspTNI GGTCTC 1 cut(s) 595
BsrGI TGTACA 1 cut(s) 565
BsrI ACTGG 2 cut(s) 337, 515
BssECI CCNNGG 1 cut(s) 557
BssMI GATC 3 cut(s) 208, 544, 613
Bst2UI CCWGG 2 cut(s) 559, 606
Bst4CI ACNGT 5 cut(s) 164, 301, 328, 349, 397
BstAUI TGTACA 1 cut(s) 565
BstBAI YACGTR 2 cut(s) 24, 571
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 5 cut(s) 107, 204, 597, 617, 725
BstHHI GCGC 2 cut(s) 240, 409
BstKTI GATC 3 cut(s) 211, 547, 616
BstMAI GTCTC 1 cut(s) 595
BstMBI GATC 3 cut(s) 208, 544, 613
BstNI CCWGG 2 cut(s) 559, 606
BstNSI RCATGY 1 cut(s) 750
BstSCI CCNGG 2 cut(s) 557, 604
BstSFI CTRYAG 2 cut(s) 440, 579
BstV1I GCAGC 2 cut(s) 222, 454
BstX2I RGATCY 2 cut(s) 208, 544
BstYI RGATCY 2 cut(s) 208, 544
Bsu36I CCTNAGG 1 cut(s) 204
BsuI GTATCC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 376, 595
BtsI GCAGTG 2 cut(s) 150, 437
BtsIMutI CAGTG 4 cut(s) 150, 324, 344, 437
Cac8I GCNNGC 1 cut(s) 316
CfoI GCGC 2 cut(s) 240, 409
Csp6I GTAC 4 cut(s) 21, 350, 566, 729
CviAII CATG 1 cut(s) 747
CviQI GTAC 4 cut(s) 21, 350, 566, 729
DdeI CTNAG 5 cut(s) 107, 204, 597, 617, 725
DpnI GATC 3 cut(s) 210, 546, 615
DpnII GATC 3 cut(s) 208, 544, 613
Eco147I AGGCCT 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 595
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 557, 604
FaeI CATG 1 cut(s) 750
FatI CATG 1 cut(s) 746
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 236, 443
Fsp4HI GCNGC 2 cut(s) 236, 443
GlaI GCGC 2 cut(s) 239, 408
GluI GCNGC 2 cut(s) 236, 443
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 2 cut(s) 376, 595
HhaI GCGC 2 cut(s) 240, 409
Hin1II CATG 1 cut(s) 750
Hin6I GCGC 2 cut(s) 238, 407
HinP1I GCGC 2 cut(s) 238, 407
HinfI GANTC 4 cut(s) 30, 102, 190, 760
HphI GGTGA 2 cut(s) 260, 299
Hpy166II GTNNAC 6 cut(s) 21, 171, 568, 623, 716, 744
Hpy188I TCNGA 4 cut(s) 182, 279, 403, 540
Hpy188III TCNNGA 2 cut(s) 121, 667
Hpy8I GTNNAC 6 cut(s) 21, 171, 568, 623, 716, 744
Hpy99I CGWCG 1 cut(s) 261
HpyAV CCTTC 3 cut(s) 44, 491, 676
HpyCH4III ACNGT 5 cut(s) 164, 301, 328, 349, 397
HpyCH4IV ACGT 2 cut(s) 23, 570
HpyCH4V TGCA 7 cut(s) 155, 218, 389, 442, 581, 721, 767
HpyF3I CTNAG 5 cut(s) 107, 204, 597, 617, 725
HpySE526I ACGT 2 cut(s) 23, 570
Hsp92II CATG 1 cut(s) 750
HspAI GCGC 2 cut(s) 238, 407
Kzo9I GATC 3 cut(s) 208, 544, 613
LmnI GCTCC 1 cut(s) 516
Lsp1109I GCAGC 2 cut(s) 222, 454
LweI GCATC 3 cut(s) 186, 394, 730
MaeII ACGT 2 cut(s) 23, 570
MaeIII GTNAC 4 cut(s) 305, 435, 586, 749
MalI GATC 3 cut(s) 210, 546, 615
MboI GATC 3 cut(s) 208, 544, 613
MboII GAAGA 2 cut(s) 109, 357
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 2 cut(s) 208, 544
MluCI AATT 6 cut(s) 11, 270, 503, 653, 677, 768
MlyI GAGTC 2 cut(s) 111, 754
MnlI CCTC 4 cut(s) 77, 199, 366, 639
MseI TTAA 3 cut(s) 243, 507, 771
MspR9I CCNGG 2 cut(s) 559, 606
MunI CAATTG 1 cut(s) 11
MvaI CCWGG 2 cut(s) 559, 606
NdeI CATATG 1 cut(s) 220
NdeII GATC 3 cut(s) 208, 544, 613
NlaIII CATG 1 cut(s) 750
NmeAIII GCCGAG 1 cut(s) 571
NmuCI GTSAC 2 cut(s) 435, 749
NspI RCATGY 1 cut(s) 750
PceI AGGCCT 1 cut(s) 376
PciI ACATGT 1 cut(s) 746
PfeI GAWTC 2 cut(s) 30, 190
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 2 cut(s) 237, 444
PleI GAGTC 2 cut(s) 110, 754
PpsI GAGTC 2 cut(s) 110, 754
Ppu21I YACGTR 2 cut(s) 24, 571
PscI ACATGT 1 cut(s) 746
PsiI TTATAA 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 557, 604
PspGI CCWGG 2 cut(s) 557, 604
PstI CTGCAG 2 cut(s) 444, 583
PsuI RGATCY 2 cut(s) 208, 544
RsaI GTAC 4 cut(s) 22, 351, 567, 730
RsaNI GTAC 4 cut(s) 21, 350, 566, 729
SaqAI TTAA 3 cut(s) 243, 507, 771
SatI GCNGC 2 cut(s) 236, 443
Sau3AI GATC 3 cut(s) 208, 544, 613
ScaI AGTACT 1 cut(s) 730
SchI GAGTC 2 cut(s) 111, 754
ScrFI CCNGG 2 cut(s) 559, 606
SfaNI GCATC 3 cut(s) 186, 394, 730
SfcI CTRYAG 2 cut(s) 440, 579
Sse9I AATT 6 cut(s) 11, 270, 503, 653, 677, 768
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 1 cut(s) 640
SspI AATATT 1 cut(s) 430
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 2 cut(s) 557, 604
TaaI ACNGT 5 cut(s) 164, 301, 328, 349, 397
TaiI ACGT 2 cut(s) 26, 573
TaqI TCGA 1 cut(s) 100
TasI AATT 6 cut(s) 11, 270, 503, 653, 677, 768
TatI WGTACW 2 cut(s) 565, 728
TfiI GAWTC 2 cut(s) 30, 190
Tru1I TTAA 3 cut(s) 243, 507, 771
Tru9I TTAA 3 cut(s) 243, 507, 771
TscAI CASTG 4 cut(s) 157, 331, 344, 444
TseFI GTSAC 2 cut(s) 435, 749
TseI GCWGC 2 cut(s) 235, 442
Tsp45I GTSAC 2 cut(s) 435, 749
TspDTI ATGAA 1 cut(s) 86
TspRI CASTG 4 cut(s) 157, 331, 344, 444
Van91I CCANNNNNTGG 1 cut(s) 127
XapI RAATTY 1 cut(s) 503
XceI RCATGY 1 cut(s) 750
ZrmI AGTACT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.