Rh4CG105400

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000908
Physical Location & Seq
Reverse (-)
19441149 .. 19446620
5472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG105400.1

Sequence Viewer

Length: 681 bp
ATGGACATTCTGGGCGGCTCTCAAGATGGGGACGGATTGGACCTTGAGGGCCAGTTGGTCACGGTCTGTCTGGGAAGCAAAGAGATCGAGGTGGAGGAGGTATTGGTTTCTGGGGTGAGTTTACGTTGTCACTTGGCTGAGAAGAATGTTTCCTATCTTCCAATTTCATCACCACCTGTTCTCTCTATCCATCAGAAACATGATACTACAGGCTCTGTAGAGTTGCCTCTTTCGCTGCAGAAAAAGTTGTTTTCTGGAGAACATACAAAAGAATGTCTTTCGGCAGTTGAAACGATATTTGGATCAGATGCGCCACCATTTGACCCGAGCAATATTGTGTCACTGCAGCTTATGTTCAGCAAGTTTGAATATGATGGAAAACTCAATCCTACTTTTGTGGAAGGGGAATTTAAGCTCCCAGTTTCAAGCATAAGAGCATATCTGAAAGATCCTATAACTCCCAGGTTTGTACACGTAGGCTCTGCAGGAGTTACTCGGCCTGAGAGACCTGGACTTGATCTAAGTAAACAACCTCCTGCTGTGCAGTTGAACAAGGAATTGGATTTTATCCTGACTTTCAAATTGAAGGTTTATCCTAAACTAATGCGAACTATTTGTTTACTGCATCTTAGTACTCTACTGCTGTTTACATGTCACAAACTGACTCTTGCAATTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CIA30 NAD_binding_10

Protein Analysis

226

Amino Acids

24.87

Weight (kDa)

6.16

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 15
AclWI GGATC 2 cut(s) 310, 443
AcsI RAATTY 1 cut(s) 407
AfaI GTAC 2 cut(s) 471, 634
AflIII ACRYGT 2 cut(s) 472, 650
AgsI TTSAA 6 cut(s) 290, 368, 426, 550, 580, 586
AjnI CCWGG 2 cut(s) 461, 508
AjuI GAANNNNNNNTTGG 4 cut(s) 282, 314, 542, 574
AluBI AGCT 2 cut(s) 349, 415
AluI AGCT 2 cut(s) 349, 415
Alw26I GTCTC 1 cut(s) 499
AlwI GGATC 2 cut(s) 310, 443
AlwNI CAGNNNCTG 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 325
AoxI GGCC 2 cut(s) 49, 497
ApeKI GCWGC 2 cut(s) 235, 346
ApoI RAATTY 1 cut(s) 407
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 40, 49
AsuHPI GGTGA 2 cut(s) 127, 162
AvaI CYCGRG 1 cut(s) 325
AvaII GGWCC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 222, 358
BccI CCATC 3 cut(s) 20, 198, 368
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 2 cut(s) 463, 510
BcoDI GTCTC 1 cut(s) 499
BfmI CTRYAG 5 cut(s) 207, 216, 236, 344, 483
BisI GCNGC 3 cut(s) 16, 236, 347
BlsI GCNGC 3 cut(s) 17, 237, 348
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 2 cut(s) 463, 510
Bme18I GGWCC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 40, 49
BmrFI CCNGG 2 cut(s) 463, 510
BmrI ACTGGG 1 cut(s) 413
BmsI GCATC 2 cut(s) 298, 634
BmuI ACTGGG 1 cut(s) 413
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 6, 65
BsaAI YACGTR 1 cut(s) 475
BsaI GGTCTC 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 461
Bse1I ACTGG 2 cut(s) 52, 419
BseBI CCWGG 2 cut(s) 463, 510
BseDI CCNNGG 1 cut(s) 461
BseMII CTCAG 2 cut(s) 129, 492
BseNI ACTGG 2 cut(s) 52, 419
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 2 cut(s) 222, 358
BsgI GTGCAG 1 cut(s) 563
BshFI GGCC 2 cut(s) 51, 499
BsiHKCI CYCGRG 1 cut(s) 325
BslFI GGGAC 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 2 cut(s) 51, 499
Bso31I GGTCTC 1 cut(s) 499
BsoBI CYCGRG 1 cut(s) 325
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 4 cut(s) 84, 302, 448, 517
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 51, 499
BspCNI CTCAG 2 cut(s) 130, 493
BspMAI CTGCAG 3 cut(s) 240, 348, 487
BspPI GGATC 2 cut(s) 310, 443
BspTNI GGTCTC 1 cut(s) 499
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 2 cut(s) 52, 419
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 4 cut(s) 84, 302, 448, 517
Bst2UI CCWGG 2 cut(s) 463, 510
Bst4CI ACNGT 1 cut(s) 64
BstAUI TGTACA 1 cut(s) 469
BstBAI YACGTR 1 cut(s) 475
BstDEI CTNAG 4 cut(s) 138, 501, 521, 629
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 4 cut(s) 87, 305, 451, 520
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 4 cut(s) 84, 302, 448, 517
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNI CCWGG 2 cut(s) 463, 510
BstNSI RCATGY 1 cut(s) 654
BstSCI CCNGG 2 cut(s) 461, 508
BstSFI CTRYAG 5 cut(s) 207, 216, 236, 344, 483
BstV1I GCAGC 2 cut(s) 222, 358
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 2 cut(s) 51, 499
BtsI GCAGTG 1 cut(s) 341
BtsIMutI CAGTG 1 cut(s) 341
CaiI CAGNNNCTG 1 cut(s) 215
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 40, 49
Csp6I GTAC 2 cut(s) 470, 633
CviAII CATG 2 cut(s) 200, 651
CviJI RGCY 8 cut(s) 18, 51, 137, 213, 349, 415, 480, 499
CviKI_1 RGCY 8 cut(s) 18, 51, 137, 213, 349, 415, 480, 499
CviQI GTAC 2 cut(s) 470, 633
DdeI CTNAG 4 cut(s) 138, 501, 521, 629
DpnI GATC 4 cut(s) 86, 304, 450, 519
DpnII GATC 4 cut(s) 84, 302, 448, 517
Eco31I GGTCTC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 461, 508
FaeI CATG 2 cut(s) 203, 654
FaiI YATR 8 cut(s) 201, 264, 353, 372, 431, 439, 455, 652
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 1 cut(s) 44
FatI CATG 2 cut(s) 199, 650
Fnu4HI GCNGC 3 cut(s) 16, 236, 347
Fsp4HI GCNGC 3 cut(s) 16, 236, 347
GlaI GCGC 1 cut(s) 312
GluI GCNGC 3 cut(s) 16, 236, 347
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 51, 499
HhaI GCGC 1 cut(s) 313
Hin1II CATG 2 cut(s) 203, 654
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HinfI GANTC 1 cut(s) 664
HphI GGTGA 2 cut(s) 127, 162
Hpy166II GTNNAC 5 cut(s) 122, 472, 527, 620, 648
Hpy188I TCNGA 3 cut(s) 195, 307, 444
Hpy188III TCNNGA 3 cut(s) 23, 255, 571
Hpy8I GTNNAC 5 cut(s) 122, 472, 527, 620, 648
HpyAV CCTTC 2 cut(s) 395, 580
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 2 cut(s) 124, 474
HpyCH4V TGCA 6 cut(s) 238, 346, 485, 544, 625, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 4 cut(s) 138, 501, 521, 629
HpySE526I ACGT 2 cut(s) 124, 474
Hsp92II CATG 2 cut(s) 203, 654
HspAI GCGC 1 cut(s) 311
Kzo9I GATC 4 cut(s) 84, 302, 448, 517
LmnI GCTCC 1 cut(s) 420
Lsp1109I GCAGC 2 cut(s) 222, 358
LweI GCATC 2 cut(s) 298, 634
MaeII ACGT 2 cut(s) 124, 474
MaeIII GTNAC 5 cut(s) 58, 128, 339, 490, 653
MalI GATC 4 cut(s) 86, 304, 450, 519
MboI GATC 4 cut(s) 84, 302, 448, 517
MboII GAAGA 2 cut(s) 149, 154
MflI RGATCY 1 cut(s) 448
MluCI AATT 5 cut(s) 162, 407, 557, 581, 672
MlyI GAGTC 1 cut(s) 658
MnlI CCTC 6 cut(s) 40, 82, 88, 91, 237, 543
MseI TTAA 2 cut(s) 411, 675
MspR9I CCNGG 2 cut(s) 463, 510
MvaI CCWGG 2 cut(s) 463, 510
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 4 cut(s) 84, 302, 448, 517
NlaIII CATG 2 cut(s) 203, 654
NmeAIII GCCGAG 1 cut(s) 475
NmuCI GTSAC 4 cut(s) 58, 128, 339, 653
NspI RCATGY 1 cut(s) 654
PciI ACATGT 1 cut(s) 650
PkrI GCNGC 3 cut(s) 17, 237, 348
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
Ppu21I YACGTR 1 cut(s) 475
PscI ACATGT 1 cut(s) 650
Psp6I CCWGG 2 cut(s) 461, 508
PspGI CCWGG 2 cut(s) 461, 508
PspPI GGNCC 2 cut(s) 40, 49
PstI CTGCAG 3 cut(s) 240, 348, 487
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 2 cut(s) 471, 634
RsaNI GTAC 2 cut(s) 470, 633
SaqAI TTAA 2 cut(s) 411, 675
SatI GCNGC 3 cut(s) 16, 236, 347
Sau3AI GATC 4 cut(s) 84, 302, 448, 517
Sau96I GGNCC 2 cut(s) 40, 49
ScaI AGTACT 1 cut(s) 634
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 2 cut(s) 463, 510
SfaNI GCATC 2 cut(s) 298, 634
SfcI CTRYAG 5 cut(s) 207, 216, 236, 344, 483
SinI GGWCC 1 cut(s) 40
SmlI CTYRAG 2 cut(s) 21, 44
SmoI CTYRAG 2 cut(s) 21, 44
Sse9I AATT 5 cut(s) 162, 407, 557, 581, 672
SsiI CCGC 1 cut(s) 15
SspI AATATT 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 461, 508
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 2 cut(s) 127, 477
TaqI TCGA 1 cut(s) 87
TasI AATT 5 cut(s) 162, 407, 557, 581, 672
TatI WGTACW 2 cut(s) 469, 632
TauI GCSGC 1 cut(s) 18
Tru1I TTAA 2 cut(s) 411, 675
Tru9I TTAA 2 cut(s) 411, 675
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 4 cut(s) 58, 128, 339, 653
TseI GCWGC 2 cut(s) 235, 346
Tsp45I GTSAC 4 cut(s) 58, 128, 339, 653
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 407
XceI RCATGY 1 cut(s) 654
ZrmI AGTACT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.