Rh7AG398700

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000908
Physical Location & Seq
Reverse (-)
52391264 .. 52394807
3544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG398700.1

Sequence Viewer

Length: 555 bp
ATGAAAAATTTGATTAATGCTCTAAAACAAAGTGTTGGACTTCAAAATGGAAAGCTACTATTTGGATATGAAGGTAATAATTATAGGGAATTGACTTGGGGAGCTTTAGATGATGTTGTGATGGGTGGAGTGAGTGAAAGTACATTTCTGATCGACCCAAATGGCAGTGAAAATGGTGGACCAACTAATCTTTTTAAAGGAGTTTTTTCCACTGCAAATAACGGTGGGTTTACAAGCATCAGAACAAAGAATCTATCAACTCCTGAGGATCTCTCTGCATATGATGGTATAGAGCTGCGCCTTAAAGGTGATGGTCGTCGTTATAAACTAATTCCTTGGACAAGTGGTGATTGGGATACTGTTGGTTACACAGCAGGCTTTGACACTGTAAAAGACCAGTGGCAGACAGTGAGTATCACAATGGTCCTCTCAATTTTTCTCTGGCCAAATCAAGGTGGTTTGAGCTGCCTCAGCCGAGCTGCCGGGCTTCACACTCACCAGAGGAACAAGAGAACCCGACTTTTCGACTTTCAGAGATCTGAGACAGATTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CIA30 NAD_binding_10

Protein Analysis

184

Amino Acids

20.35

Weight (kDa)

6.73

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 31 - 141 8.7e-28 Complex I intermediate-associated protein 30 (CIA30)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AclWI GGATC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 443
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 5 cut(s) 55, 104, 295, 465, 479
AluI AGCT 5 cut(s) 55, 104, 295, 465, 479
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 1 cut(s) 276
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 3 cut(s) 295, 465, 479
ApoI RAATTY 1 cut(s) 7
AseI ATTAAT 1 cut(s) 15
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 179, 424
AsuC2I CCSGG 1 cut(s) 484
AsuHPI GGTGA 3 cut(s) 320, 359, 488
AvaII GGWCC 2 cut(s) 179, 424
AxyI CCTNAGG 1 cut(s) 264
BalI TGGCCA 1 cut(s) 445
BbvCI CCTCAGC 1 cut(s) 470
BbvI GCAGC 3 cut(s) 282, 452, 466
BccI CCATC 3 cut(s) 115, 278, 305
BciVI GTATCC 1 cut(s) 349
BcnI CCSGG 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 536
BfuI GTATCC 1 cut(s) 349
BglII AGATCT 1 cut(s) 536
BisI GCNGC 3 cut(s) 296, 466, 480
BlsI GCNGC 3 cut(s) 297, 467, 481
Bme1390I CCNGG 1 cut(s) 484
Bme18I GGWCC 2 cut(s) 179, 424
BmgT120I GGNCC 2 cut(s) 179, 424
BmrFI CCNGG 1 cut(s) 484
BmsI GCATC 1 cut(s) 246
BplI GAGNNNNNCTC 2 cut(s) 257, 289
Bpu10I CCTNAGC 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 397
Bse21I CCTNAGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 3 cut(s) 255, 484, 531
BseNI ACTGG 1 cut(s) 397
BseXI GCAGC 3 cut(s) 282, 452, 466
BshFI GGCC 1 cut(s) 445
BsiSI CCGG 1 cut(s) 483
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 536
BsnI GGCC 1 cut(s) 445
Bsp143I GATC 3 cut(s) 150, 268, 536
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 3 cut(s) 256, 483, 532
BspPI GGATC 1 cut(s) 276
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 3 cut(s) 150, 268, 536
BssT1I CCWWGG 1 cut(s) 335
Bst4CI ACNGT 4 cut(s) 224, 361, 388, 409
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 3 cut(s) 264, 470, 540
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 3 cut(s) 153, 271, 539
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 3 cut(s) 150, 268, 536
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 482
BstV1I GCAGC 3 cut(s) 282, 452, 466
BstX2I RGATCY 2 cut(s) 268, 536
BstYI RGATCY 2 cut(s) 268, 536
Bsu36I CCTNAGG 1 cut(s) 264
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 1 cut(s) 445
BtsI GCAGTG 2 cut(s) 172, 210
BtsIMutI CAGTG 5 cut(s) 172, 210, 384, 404, 414
Cac8I GCNNGC 1 cut(s) 376
CfoI GCGC 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 179, 424
Csp6I GTAC 1 cut(s) 141
CviJI RGCY 9 cut(s) 55, 104, 295, 378, 445, 465, 474, 479, 487
CviKI_1 RGCY 9 cut(s) 55, 104, 295, 378, 445, 465, 474, 479, 487
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 3 cut(s) 264, 470, 540
DpnI GATC 3 cut(s) 152, 270, 538
DpnII GATC 3 cut(s) 150, 268, 536
DraI TTTAAA 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 335
Eco47I GGWCC 2 cut(s) 179, 424
Eco81I CCTNAGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaiI YATR 6 cut(s) 69, 84, 280, 282, 290, 324
FauNDI CATATG 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 296, 466, 480
Fsp4HI GCNGC 3 cut(s) 296, 466, 480
GlaI GCGC 1 cut(s) 299
GluI GCNGC 3 cut(s) 296, 466, 480
HaeIII GGCC 1 cut(s) 445
HapII CCGG 1 cut(s) 483
HhaI GCGC 1 cut(s) 300
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HinfI GANTC 2 cut(s) 250, 548
HpaII CCGG 1 cut(s) 483
HphI GGTGA 3 cut(s) 320, 359, 488
Hpy166II GTNNAC 2 cut(s) 179, 231
Hpy188I TCNGA 4 cut(s) 150, 242, 534, 541
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 179, 231
Hpy99I CGWCG 1 cut(s) 321
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 4 cut(s) 224, 361, 388, 409
HpyCH4V TGCA 2 cut(s) 215, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpyF3I CTNAG 3 cut(s) 264, 470, 540
HspAI GCGC 1 cut(s) 298
Kzo9I GATC 3 cut(s) 150, 268, 536
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 6 cut(s) 276, 360, 410, 427, 496, 512
Lsp1109I GCAGC 3 cut(s) 282, 452, 466
LweI GCATC 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 365
MalI GATC 3 cut(s) 152, 270, 538
MboI GATC 3 cut(s) 150, 268, 536
MflI RGATCY 2 cut(s) 268, 536
MlsI TGGCCA 1 cut(s) 445
MluCI AATT 5 cut(s) 7, 79, 89, 330, 432
MluNI TGGCCA 1 cut(s) 445
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 4 cut(s) 259, 437, 479, 495
Mox20I TGGCCA 1 cut(s) 445
MscI TGGCCA 1 cut(s) 445
MseI TTAA 3 cut(s) 15, 195, 303
Msp20I TGGCCA 1 cut(s) 445
MspI CCGG 1 cut(s) 483
MspR9I CCNGG 1 cut(s) 484
MwoI GCNNNNNNNGC 1 cut(s) 471
NciI CCSGG 1 cut(s) 484
NdeI CATATG 1 cut(s) 280
NdeII GATC 3 cut(s) 150, 268, 536
NmeAIII GCCGAG 1 cut(s) 500
PfeI GAWTC 2 cut(s) 250, 548
PkrI GCNGC 3 cut(s) 297, 467, 481
PshBI ATTAAT 1 cut(s) 15
PsiI TTATAA 1 cut(s) 324
PspPI GGNCC 2 cut(s) 179, 424
PsuI RGATCY 2 cut(s) 268, 536
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 3 cut(s) 15, 195, 303
SatI GCNGC 3 cut(s) 296, 466, 480
Sau3AI GATC 3 cut(s) 150, 268, 536
Sau96I GGNCC 2 cut(s) 179, 424
ScrFI CCNGG 1 cut(s) 484
SetI ASST 8 cut(s) 57, 76, 106, 297, 310, 457, 467, 481
SfaNI GCATC 1 cut(s) 246
SinI GGWCC 2 cut(s) 179, 424
Sse9I AATT 5 cut(s) 7, 79, 89, 330, 432
StyD4I CCNGG 1 cut(s) 482
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 4 cut(s) 224, 361, 388, 409
TaqI TCGA 2 cut(s) 153, 525
TasI AATT 5 cut(s) 7, 79, 89, 330, 432
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 2 cut(s) 250, 548
Tru1I TTAA 3 cut(s) 15, 195, 303
Tru9I TTAA 3 cut(s) 15, 195, 303
TscAI CASTG 5 cut(s) 172, 217, 391, 404, 414
TseI GCWGC 3 cut(s) 295, 465, 479
TspDTI ATGAA 2 cut(s) 17, 84
TspRI CASTG 5 cut(s) 172, 217, 391, 404, 414
VpaK11BI GGWCC 2 cut(s) 179, 424
VspI ATTAAT 1 cut(s) 15
XapI RAATTY 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.