MD01G1003000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0002047
Physical Location & Seq
Forward (+)
1100833 .. 1101510
678 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1003000.v1.1.491

Sequence Viewer

Length: 225 bp
ATGAAAGTTGAGCTTAGTGAGGTCCCAAGGAAGCTCGGAGTGCTTCGTTGGAAGTTTTTGGACGTAAGAACACGGAGATCGACAAGTTCAAAGTTTGGCCGGAGCTTTCGAGGCTTTTTCCGGCGAATCCCCGGCGAGTTAGGAGTCGAGGTAGGTATCAATTTCTTCGTCTCGTCAAGTACTACAACTTTCCTTTTTGTTTCACTCAATTTCGTTGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.61

Weight (kDa)

11.22

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 97
AfaI GTAC 1 cut(s) 181
AgsI TTSAA 1 cut(s) 90
AluBI AGCT 3 cut(s) 13, 34, 105
AluI AGCT 3 cut(s) 13, 34, 105
Alw26I GTCTC 1 cut(s) 175
AoxI GGCC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 22
AsuC2I CCSGG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 22
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 175
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 26, 130
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
BseDI CCNNGG 2 cut(s) 26, 130
BshFI GGCC 1 cut(s) 99
BsiSI CCGG 3 cut(s) 100, 121, 132
BslFI GGGAC 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 175
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 77
BspANI GGCC 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 26, 130
BssMI GATC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 14
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 40, 111
BstSCI CCNGG 1 cut(s) 130
BsuRI GGCC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 180
CviJI RGCY 5 cut(s) 13, 34, 99, 105, 114
CviKI_1 RGCY 5 cut(s) 13, 34, 99, 105, 114
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 175
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 1 cut(s) 8
HaeIII GGCC 1 cut(s) 99
HapII CCGG 3 cut(s) 100, 121, 132
HinfI GANTC 2 cut(s) 126, 144
HpaII CCGG 3 cut(s) 100, 121, 132
Hpy188I TCNGA 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 111
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 63
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 3 cut(s) 113, 134, 145
MaeII ACGT 1 cut(s) 63
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 1 cut(s) 157
MluCI AATT 2 cut(s) 160, 208
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 3 cut(s) 13, 104, 142
MspI CCGG 3 cut(s) 100, 121, 132
MspR9I CCNGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 40, 111
NciI CCSGG 1 cut(s) 132
NdeII GATC 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 126
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 22
Psp5II RGGWCCY 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 22
PspPPI RGGWCCY 1 cut(s) 22
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 22
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 132
SetI ASST 7 cut(s) 15, 24, 36, 66, 107, 153, 157
SinI GGWCC 1 cut(s) 22
Sse9I AATT 2 cut(s) 160, 208
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 26
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 80, 109, 147
TasI AATT 2 cut(s) 160, 208
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 22
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.