MD08G1227700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
29396645 .. 29404980
8336 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1227700.v1.1.491

Sequence Viewer

Length: 420 bp
ATGACTTATGGACTATACACTCAGACACACTCATTATTCATTATTCCTTCCCGTGATTCCCTCAAACACTCACACTCTCTCTCTCCCGTCAAGCTCTCTCTCACTCTCTCTCTCTTTCTACACTCACGGCAAAACAACAAGGATCTTCAAATCTTCACAGATCGAAGAAACAAAGACCACCATCGTCTTCATCTCGTCGATACGAATTCATCCATACCCATTTCAGCTCATAGGGAGCTTAAGGAGGTTCTTAGGAAGCTCGGAATGCTTCGTTGGAAGTTTTTGGAAGTAAAAACACAGAGATCGGAAAGTTCAATGTTTGGTCGGAACTTTCGAGGCGTTTTCCGGCCAAACCACGGAGAGTTAGACGTCGTGCGAGTTTCCGGCGAGTCCGATGGCTTTCGAGGCTTTTTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

16.28

Weight (kDa)

10.69

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 372
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 347
AcsI RAATTY 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 369
AfiI CCNNNNNNNGG 1 cut(s) 356
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 2 cut(s) 149, 315
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AluBI AGCT 4 cut(s) 94, 227, 238, 259
AluI AGCT 4 cut(s) 94, 227, 238, 259
AlwI GGATC 1 cut(s) 150
AoxI GGCC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 179
BccI CCATC 2 cut(s) 189, 389
BceAI ACGGC 1 cut(s) 143
BfrI CTTAAG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 355
BsaWI WCCGGW 1 cut(s) 414
Bsc4I CCNNNNNNNGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 349
BsiSI CCGG 3 cut(s) 346, 384, 415
BslI CCNNNNNNNGG 1 cut(s) 356
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 1 cut(s) 349
Bsp143I GATC 3 cut(s) 142, 160, 302
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 150
BspTI CTTAAG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 3 cut(s) 142, 160, 302
BssNI GRCGYC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 369
BstAFI CTTAAG 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 21, 251
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 209
BstKTI GATC 3 cut(s) 145, 163, 305
BstMBI GATC 3 cut(s) 142, 160, 302
BstMWI GCNNNNNNNGC 2 cut(s) 265, 405
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 1 cut(s) 349
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 209
CviJI RGCY 7 cut(s) 94, 227, 238, 259, 349, 399, 408
CviKI_1 RGCY 7 cut(s) 94, 227, 238, 259, 349, 399, 408
DdeI CTNAG 2 cut(s) 21, 251
DpnI GATC 3 cut(s) 144, 162, 304
DpnII GATC 3 cut(s) 142, 160, 302
EaeI YGGCCR 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 205
FaiI YATR 4 cut(s) 9, 16, 215, 231
FokI GGATG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 349
HapII CCGG 3 cut(s) 346, 384, 415
Hin1I GRCGYC 1 cut(s) 369
HinfI GANTC 2 cut(s) 56, 389
HpaII CCGG 3 cut(s) 346, 384, 415
Hpy188I TCNGA 5 cut(s) 24, 263, 307, 327, 394
Hpy99I CGWCG 2 cut(s) 200, 374
HpyAV CCTTC 1 cut(s) 57
HpyCH4IV ACGT 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 405
HpyF3I CTNAG 2 cut(s) 21, 251
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 369
Kzo9I GATC 3 cut(s) 142, 160, 302
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 2 cut(s) 359, 397
MaeII ACGT 1 cut(s) 369
MalI GATC 3 cut(s) 144, 162, 304
MboI GATC 3 cut(s) 142, 160, 302
MboII GAAGA 4 cut(s) 137, 145, 177, 179
MflI RGATCY 1 cut(s) 142
MluCI AATT 1 cut(s) 205
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 2 cut(s) 254, 305
MnlI CCTC 4 cut(s) 71, 238, 329, 398
MseI TTAA 1 cut(s) 240
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 3 cut(s) 346, 384, 415
Mva1269I GAATGC 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 265, 405
NdeII GATC 3 cut(s) 142, 160, 302
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PctI GAATGC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 56
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PsuI RGATCY 1 cut(s) 142
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 3 cut(s) 142, 160, 302
SchI GAGTC 1 cut(s) 398
SetI ASST 6 cut(s) 96, 229, 240, 249, 261, 372
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 205
TaiI ACGT 1 cut(s) 372
TaqI TCGA 4 cut(s) 163, 198, 334, 403
TasI AATT 1 cut(s) 205
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TspDTI ATGAA 3 cut(s) 28, 179, 198
TspGWI ACGGA 1 cut(s) 372
Vha464I CTTAAG 1 cut(s) 239
XapI RAATTY 1 cut(s) 205
ZraI GACGTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.