pycom07g18500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002047
Physical Location & Seq
Reverse (-)
20969353 .. 20969773
421 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g18500.1

Sequence Viewer

Length: 240 bp
ATGTCGATTCGAGGTCCTAAGGAAGCTCGGAGTGCTTCGTTTGAAGGAATTGGACGTCGGGATCATCGTGGTCAAAGTTGGCCGGAGCTTTCGAGGGTTTTTCCGGCGAATCCACGGCGAGTTAGGGGTCGTGGAAGAAATTCCGGCAAAACACCCACCGCCGGCGAAACCAGTCCGGCGACGCGAGGAAGAAGACGCGCGCGTGGGCAGCGCGTGAACAGGGCGCGTGGGGGCGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.71

Weight (kDa)

12.0

Isoelectric Point (pI)

63.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 58
AccII CGCG 7 cut(s) 184, 198, 200, 202, 213, 226, 236
AciI CCGC 1 cut(s) 159
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 1 cut(s) 139
AcyI GRCGYC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 2 cut(s) 26, 88
AluI AGCT 2 cut(s) 26, 88
AlwI GGATC 1 cut(s) 69
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 5 cut(s) 200, 202, 213, 226, 236
AspS9I GGNCC 1 cut(s) 14
AvaII GGWCC 1 cut(s) 14
AxyI CCTNAGG 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 171
Bse21I CCTNAGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 171
BsePI GCGCGC 1 cut(s) 198
BseXI GCAGC 1 cut(s) 220
Bsh1236I CGCG 7 cut(s) 184, 198, 200, 202, 213, 226, 236
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 5 cut(s) 83, 104, 144, 162, 176
BslI CCNNNNNNNGG 1 cut(s) 161
BsnI GGCC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 82
BspFNI CGCG 7 cut(s) 184, 198, 200, 202, 213, 226, 236
BspPI GGATC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 113
BssHII GCGCGC 1 cut(s) 198
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 163, 200
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 113
BstFNI CGCG 7 cut(s) 184, 198, 200, 202, 213, 226, 236
BstHHI GCGC 5 cut(s) 200, 202, 213, 226, 236
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 2 cut(s) 32, 208
BstUI CGCG 7 cut(s) 184, 198, 200, 202, 213, 226, 236
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 199
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 163, 200
CfoI GCGC 5 cut(s) 200, 202, 213, 226, 236
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 2 cut(s) 190, 204
CviJI RGCY 3 cut(s) 26, 82, 88
CviKI_1 RGCY 3 cut(s) 26, 82, 88
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 14
Eco81I CCTNAGG 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 209
GlaI GCGC 5 cut(s) 199, 201, 212, 225, 235
GluI GCNGC 1 cut(s) 209
HaeIII GGCC 1 cut(s) 82
HapII CCGG 5 cut(s) 83, 104, 144, 162, 176
HgaI GACGC 2 cut(s) 190, 204
HhaI GCGC 5 cut(s) 200, 202, 213, 226, 236
Hin1I GRCGYC 1 cut(s) 55
Hin6I GCGC 5 cut(s) 198, 200, 211, 224, 234
HinP1I GCGC 5 cut(s) 198, 200, 211, 224, 234
HinfI GANTC 2 cut(s) 7, 109
HpaII CCGG 5 cut(s) 83, 104, 144, 162, 176
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 2 cut(s) 60, 184
HpyAV CCTTC 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 208
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 55
Hsp92I GRCGYC 1 cut(s) 55
HspAI GCGC 5 cut(s) 198, 200, 211, 224, 234
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 96, 117, 157, 175, 184, 189, 205
Lsp1109I GCAGC 1 cut(s) 220
MaeII ACGT 1 cut(s) 55
MalI GATC 1 cut(s) 63
MauBI CGCGCGCG 1 cut(s) 198
MboI GATC 1 cut(s) 61
MboII GAAGA 3 cut(s) 147, 201, 204
MluCI AATT 2 cut(s) 48, 139
MnlI CCTC 3 cut(s) 5, 87, 179
MreI CGCCGGCG 1 cut(s) 161
MroNI GCCGGC 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 139
MspI CCGG 5 cut(s) 83, 104, 144, 162, 176
MvnI CGCG 7 cut(s) 184, 198, 200, 202, 213, 226, 236
MwoI GCNNNNNNNGC 2 cut(s) 32, 208
NaeI GCCGGC 1 cut(s) 163
NdeII GATC 1 cut(s) 61
NgoMIV GCCGGC 1 cut(s) 161
PauI GCGCGC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 7, 109
PkrI GCNGC 1 cut(s) 210
PpuMI RGGWCCY 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 14
PspPI GGNCC 1 cut(s) 14
PspPPI RGGWCCY 1 cut(s) 14
PteI GCGCGC 1 cut(s) 198
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 14
SetI ASST 4 cut(s) 16, 28, 58, 90
SgrAI CRCCGGYG 1 cut(s) 161
SinI GGWCC 1 cut(s) 14
Sse9I AATT 2 cut(s) 48, 139
SsiI CCGC 1 cut(s) 159
TaiI ACGT 1 cut(s) 58
TaqI TCGA 3 cut(s) 5, 10, 92
TasI AATT 2 cut(s) 48, 139
TfiI GAWTC 2 cut(s) 7, 109
TseI GCWGC 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 139
ZraI GACGTC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.