pycom07g11330

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
11988430 .. 11988931
502 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g11330.1

Sequence Viewer

Length: 336 bp
ATGATTAAGTTTCACTGTGCACACACGGATTGCACAGGAAACCTTACCTTTTCTTTTTTTTCTTTTCCCTCTCTCTCTCTCTCCCTCACTCTCAAACACACGGCCAAAACAACAAGTTCATCAAAACTTCACAGATGGACGAAACAAAAATCACCATCTTCTTCGTTTCGACGATACGAGTCCAACCATACCAATTTCAGGACTTTTCAAGCTTATAGGAAGCTTCTTGAGGTCCTAAGGAGGCTTGGAGTAGTTCGTTGGAAGTGTTTGGACGAAAGAACACAGAGAACGACAAGTTCAAAGTTTGGCCGGAGCTTTCGGGGCTTTTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

13.17

Weight (kDa)

11.21

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 102, 307
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 2 cut(s) 209, 300
AluBI AGCT 3 cut(s) 212, 223, 315
AluI AGCT 3 cut(s) 212, 223, 315
Alw21I GWGCWC 1 cut(s) 22
Alw44I GTGCAC 1 cut(s) 18
AoxI GGCC 2 cut(s) 102, 307
ApaLI GTGCAC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 232
AxyI CCTNAGG 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 22
BccI CCATC 2 cut(s) 129, 163
BceAI ACGGC 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse21I CCTNAGG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 22
BshFI GGCC 2 cut(s) 104, 309
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 198
BsnI GGCC 2 cut(s) 104, 309
Bsp1286I GDGCHC 1 cut(s) 22
BspANI GGCC 2 cut(s) 104, 309
Bst4CI ACNGT 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 236
BsuRI GGCC 2 cut(s) 104, 309
BtsIMutI CAGTG 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 232
CviJI RGCY 7 cut(s) 104, 212, 223, 244, 309, 315, 324
CviKI_1 RGCY 7 cut(s) 104, 212, 223, 244, 309, 315, 324
DdeI CTNAG 1 cut(s) 236
EaeI YGGCCR 2 cut(s) 102, 307
Eco47I GGWCC 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 232
FaiI YATR 2 cut(s) 189, 216
HaeIII GGCC 2 cut(s) 104, 309
HapII CCGG 1 cut(s) 310
HindIII AAGCTT 2 cut(s) 210, 221
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 310
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 20
Hpy188III TCNNGA 2 cut(s) 199, 227
Hpy8I GTNNAC 1 cut(s) 20
Hpy99I CGWCG 1 cut(s) 174
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 2 cut(s) 20, 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 1 cut(s) 236
LmnI GCTCC 1 cut(s) 312
LpnPI CCDG 4 cut(s) 21, 184, 316, 323
MboII GAAGA 2 cut(s) 150, 153
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 1 cut(s) 193
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 2 cut(s) 207, 239
MnlI CCTC 4 cut(s) 79, 95, 223, 234
MseI TTAA 1 cut(s) 6
MspI CCGG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 321
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
PspPI GGNCC 1 cut(s) 232
PspPPI RGGWCCY 1 cut(s) 232
SaqAI TTAA 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 22
SetI ASST 6 cut(s) 45, 50, 214, 225, 234, 317
SinI GGWCC 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 193
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 169
TasI AATT 1 cut(s) 193
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 1 cut(s) 20
VneI GTGCAC 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.