pycom10g10770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0002047
Physical Location & Seq
Reverse (-)
14225757 .. 14226367
611 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g10770.2

Sequence Viewer

Length: 306 bp
ATGGTACCAATTTCAGCTTGTAGGAAGCTTGGTGAGGTCCTAAGGAAGCTCGGAGTGCTTCGTTTGAAGGATTTGGACGTCGGAATCACGAACTATTACGTGAAAAATGGACGTAAGAACAAGGAGAATGACAAGTTCAAAGTTTGGCCGGAGCTTTCGGGGCTTTTTCCGGCGAATCCACAGCGAGTTAGGGGTCGAGGTAGAAATTCCGGCAAAACACCCACCGCCGGCGAAACCAGTCCGGCGACGCGAGGAAGAAGACGCGCGCGTGGGCAGCGCGTGAACAGGGCGCGTGGGGGCGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.23

Weight (kDa)

11.69

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
AciI CCGC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 67, 139
AluBI AGCT 4 cut(s) 17, 28, 49, 154
AluI AGCT 4 cut(s) 17, 28, 49, 154
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 205
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 5 cut(s) 266, 268, 279, 292, 302
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 37
AxyI CCTNAGG 1 cut(s) 41
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 286
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 237
Bse21I CCTNAGG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 227
BseNI ACTGG 1 cut(s) 237
BsePI GCGCGC 1 cut(s) 264
BseXI GCAGC 1 cut(s) 286
Bsh1236I CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
BshFI GGCC 1 cut(s) 148
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 5 cut(s) 149, 170, 210, 228, 242
BslI CCNNNNNNNGG 1 cut(s) 227
BsnI GGCC 1 cut(s) 148
BspACI CCGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 148
BspFNI CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 227
BssHII GCGCGC 1 cut(s) 264
BssNI GRCGYC 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 229, 266
BstDEI CTNAG 1 cut(s) 41
BstFNI CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
BstHHI GCGC 5 cut(s) 266, 268, 279, 292, 302
BstMWI GCNNNNNNNGC 3 cut(s) 55, 160, 274
BstUI CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 265
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 229, 266
CfoI GCGC 5 cut(s) 266, 268, 279, 292, 302
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 37
CseI GACGC 2 cut(s) 256, 270
Csp6I GTAC 1 cut(s) 5
CviJI RGCY 6 cut(s) 17, 28, 49, 148, 154, 163
CviKI_1 RGCY 6 cut(s) 17, 28, 49, 148, 154, 163
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 275
GlaI GCGC 5 cut(s) 265, 267, 278, 291, 301
GluI GCNGC 1 cut(s) 275
HaeIII GGCC 1 cut(s) 148
HapII CCGG 5 cut(s) 149, 170, 210, 228, 242
HgaI GACGC 2 cut(s) 256, 270
HhaI GCGC 5 cut(s) 266, 268, 279, 292, 302
Hin1I GRCGYC 1 cut(s) 78
Hin6I GCGC 5 cut(s) 264, 266, 277, 290, 300
HinP1I GCGC 5 cut(s) 264, 266, 277, 290, 300
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 2 cut(s) 84, 175
HpaII CCGG 5 cut(s) 149, 170, 210, 228, 242
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 53, 83
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 2 cut(s) 83, 250
HpyAV CCTTC 1 cut(s) 61
HpyCH4IV ACGT 3 cut(s) 78, 99, 112
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 160, 274
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 3 cut(s) 78, 99, 112
Hsp92I GRCGYC 1 cut(s) 78
HspAI GCGC 5 cut(s) 264, 266, 277, 290, 300
KpnI GGTACC 1 cut(s) 8
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 7 cut(s) 162, 183, 223, 241, 250, 255, 271
Lsp1109I GCAGC 1 cut(s) 286
MaeII ACGT 3 cut(s) 78, 99, 112
MauBI CGCGCGCG 1 cut(s) 264
MboII GAAGA 2 cut(s) 267, 270
MluCI AATT 2 cut(s) 9, 205
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 3 cut(s) 28, 191, 245
MreI CGCCGGCG 1 cut(s) 227
MroNI GCCGGC 1 cut(s) 227
MspI CCGG 5 cut(s) 149, 170, 210, 228, 242
MvnI CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
MwoI GCNNNNNNNGC 3 cut(s) 55, 160, 274
NaeI GCCGGC 1 cut(s) 229
NgoMIV GCCGGC 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 6
PauI GCGCGC 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 229
PfeI GAWTC 2 cut(s) 84, 175
PkrI GCNGC 1 cut(s) 276
Ppu21I YACGTR 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 37
PspPPI RGGWCCY 1 cut(s) 37
PteI GCGCGC 1 cut(s) 264
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SatI GCNGC 1 cut(s) 275
Sau96I GGNCC 1 cut(s) 37
SetI ASST 9 cut(s) 19, 30, 39, 51, 81, 102, 115, 156, 202
SgrAI CRCCGGYG 1 cut(s) 227
SinI GGWCC 1 cut(s) 37
Sse9I AATT 2 cut(s) 9, 205
SsiI CCGC 1 cut(s) 225
TaiI ACGT 3 cut(s) 81, 102, 115
TaqI TCGA 1 cut(s) 196
TasI AATT 2 cut(s) 9, 205
TfiI GAWTC 2 cut(s) 84, 175
TseI GCWGC 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 205
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.