pycom11g15610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002047
Physical Location & Seq
Reverse (-)
16360363 .. 16361149
787 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g15610.1

Sequence Viewer

Length: 564 bp
ATGATTAAAGACAGGGCACTGTGCATACACGGTTCCTCAAACCTGTTTTTCATTCTTCCTCTCTCCCCGTCAAGCTCTCTCTCTCTCCCTCACTCTCAAACACACGGCAACAACACCAATTCTTCAAAACTTCACGGATCGACGAAAATAAAATCACCATCTTCTTCGTTTCGACGATACGAGTCCAACCATACCAATTTCAGGACTTTTCAAGCTTATAGGAAGCTTCTTGAGGTCCTTAGGAGGCTTGGAGTAATTCGTTGGAAGTTTTTGGACGAAAAAACACGGAGAACGACAAGTTCAAAGTTTAGCCGGAGCTTTCGAGGCTTTTTCCGGCGAATCCACGGCGAGTTAGGGGTCGAGGCAGAAATTCCGGCAAAACACCCACCTCCGGCGAAACCAGTCCGGCGACGCGAGGAAGAAGACGCGCGCGTGGGCAGCGCGTATACATGGCGCGTGAGGGCGCGTGAGAGCTCCAAATTGAGTTCTAAAAATTGTCACGTGTTCGTGACGTCGTGTAGATCACCATGGTATATTCACACACCCAAATTGAGCAACGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.57

Weight (kDa)

11.08

Isoelectric Point (pI)

63.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 515
AccI GTMKAC 1 cut(s) 446
AccII CGCG 7 cut(s) 414, 428, 430, 432, 443, 456, 466
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 369
AcvI CACGTG 1 cut(s) 502
AcyI GRCGYC 1 cut(s) 512
AfiI CCNNNNNNNGG 2 cut(s) 201, 391
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 3 cut(s) 126, 212, 303
AluBI AGCT 5 cut(s) 75, 215, 226, 318, 474
AluI AGCT 5 cut(s) 75, 215, 226, 318, 474
Alw21I GWGCWC 1 cut(s) 476
AlwI GGATC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 438
ApoI RAATTY 1 cut(s) 369
AspLEI GCGC 5 cut(s) 430, 432, 443, 456, 466
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 147, 516
AvaII GGWCC 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 476
BbrPI CACGTG 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 1 cut(s) 450
BccI CCATC 1 cut(s) 166
BceAI ACGGC 2 cut(s) 121, 361
BisI GCNGC 1 cut(s) 439
BlsI GCNGC 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 502
BsaHI GRCGYC 1 cut(s) 512
BsaJI CCNNGG 2 cut(s) 343, 527
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 391
Bse1I ACTGG 1 cut(s) 401
Bse21I CCTNAGG 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 343, 527
BseLI CCNNNNNNNGG 2 cut(s) 201, 391
BseNI ACTGG 1 cut(s) 401
BsePI GCGCGC 1 cut(s) 428
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 1 cut(s) 450
Bsh1236I CGCG 7 cut(s) 414, 428, 430, 432, 443, 456, 466
BsiHKAI GWGCWC 1 cut(s) 476
BsiSI CCGG 5 cut(s) 313, 334, 374, 392, 406
BslI CCNNNNNNNGG 2 cut(s) 201, 391
Bsp1286I GDGCHC 2 cut(s) 19, 476
Bsp143I GATC 2 cut(s) 137, 521
Bsp19I CCATGG 1 cut(s) 527
BspFNI CGCG 7 cut(s) 414, 428, 430, 432, 443, 456, 466
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 343, 527
BssHII GCGCGC 1 cut(s) 428
BssMI GATC 2 cut(s) 137, 521
BssNAI GTATAC 1 cut(s) 447
BssNI GRCGYC 1 cut(s) 512
BssT1I CCWWGG 1 cut(s) 527
Bst1107I GTATAC 1 cut(s) 447
Bst4CI ACNGT 2 cut(s) 21, 32
BstACI GRCGYC 1 cut(s) 512
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 2 cut(s) 343, 527
BstFNI CGCG 7 cut(s) 414, 428, 430, 432, 443, 456, 466
BstHHI GCGC 5 cut(s) 430, 432, 443, 456, 466
BstKTI GATC 2 cut(s) 140, 524
BstMBI GATC 2 cut(s) 137, 521
BstMWI GCNNNNNNNGC 2 cut(s) 324, 438
BstSLI GKGCMC 1 cut(s) 19
BstUI CGCG 7 cut(s) 414, 428, 430, 432, 443, 456, 466
BstV1I GCAGC 1 cut(s) 450
BstV2I GAAGAC 1 cut(s) 429
BstZ17I GTATAC 1 cut(s) 447
Bsu36I CCTNAGG 1 cut(s) 239
BtgI CCRYGG 2 cut(s) 343, 527
BtsIMutI CAGTG 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 430
CfoI GCGC 5 cut(s) 430, 432, 443, 456, 466
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 2 cut(s) 420, 434
CviAII CATG 2 cut(s) 450, 528
CviJI RGCY 8 cut(s) 75, 215, 226, 247, 312, 318, 327, 474
CviKI_1 RGCY 8 cut(s) 75, 215, 226, 247, 312, 318, 327, 474
DdeI CTNAG 1 cut(s) 239
DpnI GATC 2 cut(s) 139, 523
DpnII GATC 2 cut(s) 137, 521
Ecl136II GAGCTC 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 474
Eco72I CACGTG 1 cut(s) 502
Eco81I CCTNAGG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 527
EcoT38I GRGCYC 1 cut(s) 476
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 2 cut(s) 453, 531
FaiI YATR 8 cut(s) 26, 192, 219, 447, 451, 529, 534, 562
FatI CATG 2 cut(s) 449, 527
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 1 cut(s) 439
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 1 cut(s) 439
GlaI GCGC 5 cut(s) 429, 431, 442, 455, 465
GluI GCNGC 1 cut(s) 439
HapII CCGG 5 cut(s) 313, 334, 374, 392, 406
HgaI GACGC 2 cut(s) 420, 434
HhaI GCGC 5 cut(s) 430, 432, 443, 456, 466
Hin1I GRCGYC 1 cut(s) 512
Hin1II CATG 2 cut(s) 453, 531
Hin6I GCGC 5 cut(s) 428, 430, 441, 454, 464
HinP1I GCGC 5 cut(s) 428, 430, 441, 454, 464
HindIII AAGCTT 2 cut(s) 213, 224
HinfI GANTC 2 cut(s) 182, 339
HpaII CCGG 5 cut(s) 313, 334, 374, 392, 406
HphI GGTGA 2 cut(s) 147, 516
Hpy166II GTNNAC 1 cut(s) 447
Hpy188III TCNNGA 3 cut(s) 202, 230, 508
Hpy8I GTNNAC 1 cut(s) 447
Hpy99I CGWCG 4 cut(s) 145, 177, 414, 517
HpyCH4III ACNGT 2 cut(s) 21, 32
HpyCH4IV ACGT 3 cut(s) 501, 512, 558
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 2 cut(s) 324, 438
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 3 cut(s) 501, 512, 558
Hsp92I GRCGYC 1 cut(s) 512
Hsp92II CATG 2 cut(s) 453, 531
HspAI GCGC 5 cut(s) 428, 430, 441, 454, 464
Kzo9I GATC 2 cut(s) 137, 521
LmnI GCTCC 2 cut(s) 315, 479
LpnPI CCDG 8 cut(s) 56, 187, 326, 347, 387, 405, 414, 419
Lsp1109I GCAGC 1 cut(s) 450
MaeII ACGT 3 cut(s) 501, 512, 558
MaeIII GTNAC 2 cut(s) 497, 508
MalI GATC 2 cut(s) 139, 523
MauBI CGCGCGCG 1 cut(s) 428
MboI GATC 2 cut(s) 137, 521
MboII GAAGA 6 cut(s) 47, 114, 153, 156, 431, 434
MhlI GDGCHC 2 cut(s) 19, 476
MluCI AATT 7 cut(s) 118, 196, 255, 369, 479, 493, 548
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 2 cut(s) 210, 242
MseI TTAA 1 cut(s) 6
MspI CCGG 5 cut(s) 313, 334, 374, 392, 406
MvnI CGCG 7 cut(s) 414, 428, 430, 432, 443, 456, 466
MwoI GCNNNNNNNGC 2 cut(s) 324, 438
NcoI CCATGG 1 cut(s) 527
NdeII GATC 2 cut(s) 137, 521
NlaIII CATG 2 cut(s) 453, 531
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 2 cut(s) 497, 508
PauI GCGCGC 1 cut(s) 428
PfeI GAWTC 1 cut(s) 339
PkrI GCNGC 1 cut(s) 440
PleI GAGTC 1 cut(s) 190
PmaCI CACGTG 1 cut(s) 502
PmlI CACGTG 1 cut(s) 502
PpsI GAGTC 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 502
PpuMI RGGWCCY 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 235
PspCI CACGTG 1 cut(s) 502
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
PteI GCGCGC 1 cut(s) 428
SacI GAGCTC 1 cut(s) 476
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 439
Sau3AI GATC 2 cut(s) 137, 521
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 2 cut(s) 19, 476
SinI GGWCC 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 7 cut(s) 118, 196, 255, 369, 479, 493, 548
SstI GAGCTC 1 cut(s) 476
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 2 cut(s) 21, 32
TaiI ACGT 3 cut(s) 504, 515, 561
TaqI TCGA 4 cut(s) 140, 172, 322, 360
TasI AATT 7 cut(s) 118, 196, 255, 369, 479, 493, 548
TfiI GAWTC 1 cut(s) 339
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 2 cut(s) 497, 508
TseI GCWGC 1 cut(s) 438
Tsp45I GTSAC 2 cut(s) 497, 508
TspDTI ATGAA 1 cut(s) 40
TspGWI ACGGA 2 cut(s) 150, 301
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 446
ZraI GACGTC 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.