Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002047

Physical Location & Seq

Genomic Coordinates Reverse (-)

8468192 .. 8470746

Gene Structure 2555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1116300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGCGAACGCTCGGAGTACTTCGTTTGAAGGATTTGGACGTCGGGATCACGTGGTTCAAGTTTGGCCGAATTTCTTGGAATTTTCCCGGTGACACCTATCCCGAGGACGAGCGCATCCAGGGACGTCACGAGGGTTACGACCCATCGACTTATCAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009631 GO:0009648 GO:0009791 GO:0009814 GO:0009816 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0042742 GO:0043207 GO:0043565 GO:0045087 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048571 GO:0048573 GO:0048574 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

54

Amino Acids

6.31

Weight (kDa)

5.61

Isoelectric Point (pI)

19.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002047)

Species	Orthologous Gene IDs
malus_domestica	MD01G1003000.v1.1 MD03G1237900.v1.1 MD04G1238600.v1.1 MD05G1150300.v1.1 MD05G1273200.v1.1 MD06G1068200.v1.1 MD06G1070200.v1.1 MD07G1104200.v1.1 MD08G1024900.v1.1 MD08G1227700.v1.1 MD11G1090700.v1.1 MD11G1294700.v1.1 MD13G1116300.v1.1 MD15G1240400.v1.1 MD17G1024000.v1.1
pyrus_communis	pycom01g13060 pycom02g08310 pycom03g06560 pycom03g11450 pycom03g23350 pycom04g08140 pycom06g05510 pycom06g17000 pycom07g11300 pycom07g11330 pycom07g11350 pycom07g14290 pycom07g18500 pycom08g12360 pycom09g08260 pycom09g08270 pycom09g11650 pycom09g12460 pycom09g13910 pycom10g10770 pycom11g07390 pycom11g15610 pycom12g11120 pycom15g14070 pycom15g19380 pycom15g30190 pycom16g10480 pycom17g18420 pycom17g19020 pycom17g19030

Species

Orthologous Gene IDs

malus_domestica

MD01G1003000.v1.1 MD03G1237900.v1.1 MD04G1238600.v1.1 MD05G1150300.v1.1 MD05G1273200.v1.1 MD06G1068200.v1.1 MD06G1070200.v1.1 MD07G1104200.v1.1 MD08G1024900.v1.1 MD08G1227700.v1.1 MD11G1090700.v1.1 MD11G1294700.v1.1 MD13G1116300.v1.1 MD15G1240400.v1.1 MD17G1024000.v1.1

pyrus_communis

pycom01g13060 pycom02g08310 pycom03g06560 pycom03g11450 pycom03g23350 pycom04g08140 pycom06g05510 pycom06g17000 pycom07g11300 pycom07g11330 pycom07g11350 pycom07g14290 pycom07g18500 pycom08g12360 pycom09g08260 pycom09g08270 pycom09g11650 pycom09g12460 pycom09g13910 pycom10g10770 pycom11g07390 pycom11g15610 pycom12g11120 pycom15g14070 pycom15g19380 pycom15g30190 pycom16g10480 pycom17g18420 pycom17g19020 pycom17g19030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	42, 127
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	69, 79
AcvI	CACGTG	1 cut(s)	51
AcyI	GRCGYC	2 cut(s)	39, 124
AfaI	GTAC	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	28, 58
AjnI	CCWGG	1 cut(s)	117
AlwI	GGATC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	64
ApoI	RAATTY	2 cut(s)	69, 79
AspLEI	GCGC	1 cut(s)	114
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	101
BauI	CACGAG	1 cut(s)	128
BbrPI	CACGTG	1 cut(s)	51
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	87
BfaI	CTAG	1 cut(s)	160
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	87, 119
BmeT110I	CYCGRG	1 cut(s)	101
BmrFI	CCNGG	2 cut(s)	87, 119
BmsI	GCATC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	51
BsaHI	GRCGYC	2 cut(s)	39, 124
BsaJI	CCNNGG	2 cut(s)	102, 118
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	102, 118
BseGI	GGATG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	102, 118
BssMI	GATC	1 cut(s)	45
BssNI	GRCGYC	2 cut(s)	39, 124
BssSI	CACGAG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	119
BstACI	GRCGYC	2 cut(s)	39, 124
BstBAI	YACGTR	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	85, 117
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	114
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	17
CviJI	RGCY	1 cut(s)	66
CviKI_1	RGCY	1 cut(s)	66
CviQI	GTAC	1 cut(s)	17
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	64
Eco72I	CACGTG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	117
FaqI	GGGAC	1 cut(s)	135
FokI	GGATG	1 cut(s)	101
FspBI	CTAG	1 cut(s)	160
GlaI	GCGC	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	2 cut(s)	39, 124
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	3 cut(s)	43, 101, 128
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	3 cut(s)	39, 50, 124
HpySE526I	ACGT	3 cut(s)	39, 50, 124
Hsp92I	GRCGYC	2 cut(s)	39, 124
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	3 cut(s)	100, 104, 131
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	160
MaeII	ACGT	3 cut(s)	39, 50, 124
MaeIII	GTNAC	3 cut(s)	89, 125, 134
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MluCI	AATT	2 cut(s)	69, 79
MnlI	CCTC	2 cut(s)	97, 124
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	87, 119
MvaI	CCWGG	1 cut(s)	119
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	89, 125
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	117
PspCI	CACGTG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
Sau3AI	GATC	1 cut(s)	45
ScaI	AGTACT	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	87, 119
SetI	ASST	4 cut(s)	42, 53, 98, 127
SfaNI	GCATC	1 cut(s)	123
Sse9I	AATT	2 cut(s)	69, 79
SspMI	CTAG	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	85, 117
TaiI	ACGT	3 cut(s)	42, 53, 127
TaqI	TCGA	1 cut(s)	146
TasI	AATT	2 cut(s)	69, 79
TatI	WGTACW	1 cut(s)	16
TseFI	GTSAC	2 cut(s)	89, 125
Tsp45I	GTSAC	2 cut(s)	89, 125
XapI	RAATTY	2 cut(s)	69, 79
XspI	CTAG	1 cut(s)	160
ZraI	GACGTC	2 cut(s)	40, 125
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.