pycom16g10480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002047
Physical Location & Seq
Reverse (-)
7140792 .. 7141269
478 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g10480.2

Sequence Viewer

Length: 237 bp
ATGGTACCAATTTCAGCTTGTAGGAAGCTTGGTGAAGTCCTAAGGAAGCTCGGAGTGCTTCGTTTGAAGGATTTGGACAGGAACACGGAGAACGACAAGTTCAAAGTTTGGCCGGAGCTTTCGAGGGTTTTTCCGGCGAATCCACGGCGAGTTAGGGGTCGAGGAAGGTATGGATGTGTTAGTCTCGTCAATACCTTCATTTTGATATATAGTACGTCGAAAATGGTTAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.02

Weight (kDa)

10.75

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AcoI YGGCCR 1 cut(s) 110
AfaI GTAC 2 cut(s) 6, 214
AgsI TTSAA 2 cut(s) 67, 103
AluBI AGCT 4 cut(s) 17, 28, 49, 118
AluI AGCT 4 cut(s) 17, 28, 49, 118
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 41
BanI GGYRCC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 143
Bse21I CCTNAGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 179
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 2 cut(s) 113, 134
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 1 cut(s) 112
BspANI GGCC 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 55
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 112
BtgI CCRYGG 1 cut(s) 143
BtsCI GGATG 1 cut(s) 179
Csp6I GTAC 2 cut(s) 5, 213
CviJI RGCY 5 cut(s) 17, 28, 49, 112, 118
CviKI_1 RGCY 5 cut(s) 17, 28, 49, 112, 118
CviQI GTAC 2 cut(s) 5, 213
DdeI CTNAG 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 41
FaiI YATR 3 cut(s) 171, 208, 210
FokI GGATG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 112
HapII CCGG 2 cut(s) 113, 134
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 113, 134
HphI GGTGA 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 53
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 3 cut(s) 61, 159, 205
HpyCH4IV ACGT 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 215
KpnI GGTACC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 64, 126, 147
MaeII ACGT 1 cut(s) 215
MluCI AATT 1 cut(s) 9
MnlI CCTC 2 cut(s) 117, 155
MseI TTAA 1 cut(s) 228
MspI CCGG 2 cut(s) 113, 134
MwoI GCNNNNNNNGC 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 2 cut(s) 6, 214
RsaNI GTAC 2 cut(s) 5, 213
SaqAI TTAA 1 cut(s) 228
SetI ASST 7 cut(s) 19, 30, 51, 120, 170, 197, 218
Sse9I AATT 1 cut(s) 9
TaiI ACGT 1 cut(s) 218
TaqI TCGA 3 cut(s) 122, 160, 218
TasI AATT 1 cut(s) 9
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 187
TspGWI ACGGA 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.