pycom06g05510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0002047
Physical Location & Seq
Reverse (-)
7975953 .. 7976530
578 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g05510.1

Sequence Viewer

Length: 453 bp
ATGATTAAGTTTCACTGTGCACACACGGATTTTCCTCTCATCTATCCCTCACTCTCTCTTTTTCCCTCAGCTCCCTCAAACTCACTCAACTCTCATCTCTCCCGTCAAGCTCAAGCTCTCATTCTCTTTCTCTCTCAAAAACCCACGGCCAAAACAACAAGTTCATCAAAACTTCACAGATCGACGAAACAAAAATCACCATCTTCTTCGTTTCGACGATACGAGTCCAACCATACCAATTTCAGGACTTTTCAAGCTTATAGGAAGCTTCTTGAGGTCCTAAGGAGGCTTGGAGTAGTTCGTTGGAAGTGTTTGGACGTAAGAACACGGAGAACGACAAGTTCAAAGTTTGGCCGGAGCTTTCGGGGTTTTTTTCTGGTGAATCCACGCCGAGTTAGGGGTCAAGGCAGGTATGGATGTGTTCGTCTCGTCAATACCTTCATTTTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.4

Weight (kDa)

11.79

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 399
AcoI YGGCCR 2 cut(s) 147, 352
AfiI CCNNNNNNNGG 2 cut(s) 243, 397
AgsI TTSAA 2 cut(s) 254, 345
AluBI AGCT 6 cut(s) 71, 110, 116, 257, 268, 360
AluI AGCT 6 cut(s) 71, 110, 116, 257, 268, 360
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 431
Alw44I GTGCAC 1 cut(s) 18
AoxI GGCC 2 cut(s) 147, 352
ApaLI GTGCAC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 189, 391
AvaII GGWCC 1 cut(s) 277
AxyI CCTNAGG 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 22
BbvCI CCTCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 431
BfuAI ACCTGC 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 96, 293
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 397
Bse21I CCTNAGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 422
BseLI CCNNNNNNNGG 2 cut(s) 243, 397
BseMII CTCAG 1 cut(s) 81
BseSI GKGCMC 1 cut(s) 22
BshFI GGCC 2 cut(s) 149, 354
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 243, 397
BsmAI GTCTC 1 cut(s) 431
BsmBI CGTCTC 1 cut(s) 431
BsnI GGCC 2 cut(s) 149, 354
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 179
BspANI GGCC 2 cut(s) 149, 354
BspCNI CTCAG 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 399
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 67, 281
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 422
BstKTI GATC 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 1 cut(s) 179
BstSLI GKGCMC 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 281
BsuRI GGCC 2 cut(s) 149, 354
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 422
BtsIMutI CAGTG 1 cut(s) 13
BveI ACCTGC 1 cut(s) 399
Cfr13I GGNCC 1 cut(s) 277
CviJI RGCY 9 cut(s) 71, 110, 116, 149, 257, 268, 289, 354, 360
CviKI_1 RGCY 9 cut(s) 71, 110, 116, 149, 257, 268, 289, 354, 360
DdeI CTNAG 2 cut(s) 67, 281
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
EaeI YGGCCR 2 cut(s) 147, 352
Eco47I GGWCC 1 cut(s) 277
Eco81I CCTNAGG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 431
FaiI YATR 4 cut(s) 234, 261, 414, 451
FokI GGATG 1 cut(s) 429
HaeIII GGCC 2 cut(s) 149, 354
HapII CCGG 1 cut(s) 355
HindIII AAGCTT 2 cut(s) 255, 266
HinfI GANTC 2 cut(s) 224, 382
HpaII CCGG 1 cut(s) 355
HphI GGTGA 2 cut(s) 189, 391
Hpy166II GTNNAC 1 cut(s) 20
Hpy188III TCNNGA 2 cut(s) 244, 272
Hpy8I GTNNAC 1 cut(s) 20
Hpy99I CGWCG 2 cut(s) 187, 219
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 67, 281
HpySE526I ACGT 1 cut(s) 318
Kzo9I GATC 1 cut(s) 179
LmnI GCTCC 2 cut(s) 76, 357
LpnPI CCDG 4 cut(s) 229, 362, 368, 394
MaeII ACGT 1 cut(s) 318
MalI GATC 1 cut(s) 181
MboI GATC 1 cut(s) 179
MboII GAAGA 2 cut(s) 195, 198
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 1 cut(s) 238
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 2 cut(s) 252, 284
MnlI CCTC 6 cut(s) 45, 58, 76, 85, 268, 279
MseI TTAA 1 cut(s) 6
MspI CCGG 1 cut(s) 355
NdeII GATC 1 cut(s) 179
NmeAIII GCCGAG 1 cut(s) 416
PfeI GAWTC 1 cut(s) 382
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
PspPI GGNCC 1 cut(s) 277
PspPPI RGGWCCY 1 cut(s) 277
SaqAI TTAA 1 cut(s) 6
Sau3AI GATC 1 cut(s) 179
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 233
SduI GDGCHC 1 cut(s) 22
SinI GGWCC 1 cut(s) 277
SmlI CTYRAG 2 cut(s) 111, 272
SmoI CTYRAG 2 cut(s) 111, 272
Sse9I AATT 1 cut(s) 238
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 321
TaqI TCGA 2 cut(s) 182, 214
TasI AATT 1 cut(s) 238
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 153, 430
TspGWI ACGGA 2 cut(s) 41, 343
TspRI CASTG 1 cut(s) 20
VneI GTGCAC 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.