MD11G1090700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002047
Physical Location & Seq
Forward (+)
7572329 .. 7574382
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1090700.v1.1.491

Sequence Viewer

Length: 132 bp
ATGTCTCATAGTGAGCTTAGTGAGGTCCCAAGGAAGCTCGGAGTGCTTCGTTGGAAGGATTTGGACGTCGGGATCACGAGGGTTAAGTTTGGCCGGTTTTGCTTGGATTTTTTCCGGCGCCGATCGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

44

Amino Acids

5.13

Weight (kDa)

10.81

Isoelectric Point (pI)

86.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 117
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 91
AcyI GRCGYC 2 cut(s) 66, 118
AluBI AGCT 2 cut(s) 16, 37
AluI AGCT 2 cut(s) 16, 37
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 80
AoxI GGCC 1 cut(s) 91
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 25
AvaII GGWCC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 117
BauI CACGAG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 27, 119
BsaHI GRCGYC 2 cut(s) 66, 118
BsaJI CCNNGG 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 125
BsiSI CCGG 2 cut(s) 94, 115
BslFI GGGAC 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 11
BsnI GGCC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 72, 122
BspANI GGCC 1 cut(s) 93
BspHI TCATGA 1 cut(s) 128
BspLI GGNNCC 2 cut(s) 27, 119
BspPI GGATC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 72, 122
BssNI GRCGYC 2 cut(s) 66, 118
BssSI CACGAG 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 29
Bst2BI CACGAG 1 cut(s) 76
BstACI GRCGYC 2 cut(s) 66, 118
BstDEI CTNAG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 75, 125
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 72, 122
BstMCI CGRYCG 1 cut(s) 125
BstMWI GCNNNNNNNGC 2 cut(s) 43, 99
BsuRI GGCC 1 cut(s) 93
CciI TCATGA 1 cut(s) 128
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 25
CviAII CATG 1 cut(s) 129
CviJI RGCY 3 cut(s) 16, 37, 93
CviKI_1 RGCY 3 cut(s) 16, 37, 93
DdeI CTNAG 1 cut(s) 17
DinI GGCGCC 1 cut(s) 119
DpnI GATC 2 cut(s) 74, 124
DpnII GATC 2 cut(s) 72, 122
EaeI YGGCCR 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 29
EgeI GGCGCC 1 cut(s) 119
EheI GGCGCC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 132
FaiI YATR 2 cut(s) 9, 130
FaqI GGGAC 1 cut(s) 11
FatI CATG 1 cut(s) 128
GlaI GCGC 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 93
HapII CCGG 2 cut(s) 94, 115
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 2 cut(s) 66, 118
Hin1II CATG 1 cut(s) 132
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HpaII CCGG 2 cut(s) 94, 115
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 3 cut(s) 70, 76, 129
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 99
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 2 cut(s) 66, 118
Hsp92II CATG 1 cut(s) 132
HspAI GCGC 1 cut(s) 118
KasI GGCGCC 1 cut(s) 117
Kzo9I GATC 2 cut(s) 72, 122
LpnPI CCDG 2 cut(s) 107, 128
MaeII ACGT 1 cut(s) 66
MalI GATC 2 cut(s) 74, 124
MboI GATC 2 cut(s) 72, 122
Mly113I GGCGCC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 2 cut(s) 16, 72
MseI TTAA 1 cut(s) 84
MspI CCGG 2 cut(s) 94, 115
MwoI GCNNNNNNNGC 2 cut(s) 43, 99
NarI GGCGCC 1 cut(s) 118
NdeII GATC 2 cut(s) 72, 122
NlaIII CATG 1 cut(s) 132
NlaIV GGNNCC 2 cut(s) 27, 119
PagI TCATGA 1 cut(s) 128
Ple19I CGATCG 1 cut(s) 125
PluTI GGCGCC 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 27, 119
PspPI GGNCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 25
PvuI CGATCG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 2 cut(s) 72, 122
Sau96I GGNCC 1 cut(s) 25
SetI ASST 4 cut(s) 18, 27, 39, 69
SfoI GGCGCC 1 cut(s) 119
SgeI CNNG 8 cut(s) 42, 50, 82, 88, 90, 106, 115, 127
SinI GGWCC 1 cut(s) 25
SspDI GGCGCC 1 cut(s) 117
StyI CCWWGG 1 cut(s) 29
TaiI ACGT 1 cut(s) 69
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 25
ZraI GACGTC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.