MD04G1238600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0002047
Physical Location & Seq
Forward (+)
31693195 .. 31694247
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1238600.v1.1.491

Sequence Viewer

Length: 207 bp
ATGAATTGTCGGTTATGTGCTTTAAATAACGTTGTTTTAGTTGTTTCGCATATAGGTGATACCTATTTCGAGGACGAGCACATCCAAGGACGTCACGGGGGTTACGACGACTTATCAGTTCTAATTAGCAGCGTTGGTGGCCCACGAGGATTCCCACGGCGTACTGACAGACTACATAAATGTAGGACTCACATGCGGGTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.72

Weight (kDa)

8.64

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 94
AciI CCGC 1 cut(s) 196
AclI AACGTT 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 91
AfaI GTAC 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 81
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 68
BauI CACGAG 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 173
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 85, 155
BseDI CCNNGG 2 cut(s) 85, 155
BseGI GGATG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 141
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 81
BsnI GGCC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 81
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 85, 155
BssNI GRCGYC 1 cut(s) 91
BssSI CACGAG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 91
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 162
CviAII CATG 1 cut(s) 193
CviJI RGCY 1 cut(s) 141
CviKI_1 RGCY 1 cut(s) 141
CviQI GTAC 1 cut(s) 162
DraI TTTAAA 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 196
FaiI YATR 5 cut(s) 16, 51, 53, 177, 194
FatI CATG 1 cut(s) 192
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 91
Hin1II CATG 1 cut(s) 196
HinfI GANTC 2 cut(s) 150, 187
HphI GGTGA 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 110
HpyCH4IV ACGT 2 cut(s) 30, 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpySE526I ACGT 2 cut(s) 30, 91
Hsp92I GRCGYC 1 cut(s) 91
Hsp92II CATG 1 cut(s) 196
Lsp1109I GCAGC 1 cut(s) 141
MaeII ACGT 2 cut(s) 30, 91
MaeIII GTNAC 2 cut(s) 92, 101
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 2 cut(s) 4, 123
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 2 cut(s) 64, 140
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 54, 197
MwoI GCNNNNNNNGC 1 cut(s) 138
NlaIII CATG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Psp1406I AACGTT 1 cut(s) 30
PspPI GGNCC 1 cut(s) 140
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 2 cut(s) 54, 197
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 81
SetI ASST 4 cut(s) 33, 58, 65, 94
SgeI CNNG 8 cut(s) 82, 88, 98, 107, 109, 156, 158, 168
SmiMI CAYNNNNRTG 2 cut(s) 54, 197
Sse9I AATT 2 cut(s) 4, 123
SsiI CCGC 1 cut(s) 196
StyI CCWWGG 1 cut(s) 85
TaiI ACGT 2 cut(s) 33, 94
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 4, 123
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 196
ZraI GACGTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.