pycom11g07390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002047
Physical Location & Seq
Reverse (-)
5584047 .. 5584657
611 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07390.2

Sequence Viewer

Length: 306 bp
ATGGTACCAATTTCAGCTTGTAGGAAGCTTGGTGAGGTCCTAAGGAAGCTCGGAGTGCTTCGTTTGAAGGATTTGGACGTCGGGATCACGAACTATTACGTGAAAAATGGACGTAAGAACAAGGAGAATGACAAGTTCAAAGTTTGGCCGGAGCTTTCGGGGCTTTTTCCGGCGAATCCACGGCGAGTTAGGGGTCAAGGCAGAAATTCCGGCAAAACACCCACCGCCGACGAAACCAGTCCGGCGACGCGAGGAAGAAGACGCGCGCGTGGGCAGCGCGTGAACAGTGCGCGTGGGGGCGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

11.46

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
AciI CCGC 1 cut(s) 225
AclWI GGATC 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 6
AgsI TTSAA 2 cut(s) 67, 139
AluBI AGCT 4 cut(s) 17, 28, 49, 154
AluI AGCT 4 cut(s) 17, 28, 49, 154
AlwI GGATC 1 cut(s) 92
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 205
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 5 cut(s) 266, 268, 279, 292, 302
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 37
AxyI CCTNAGG 1 cut(s) 41
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 286
BceAI ACGGC 1 cut(s) 197
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 237
Bse21I CCTNAGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 237
BsePI GCGCGC 1 cut(s) 264
BseXI GCAGC 1 cut(s) 286
Bsh1236I CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
BshFI GGCC 1 cut(s) 148
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 4 cut(s) 149, 170, 210, 242
BsnI GGCC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 148
BspFNI CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 179
BssHII GCGCGC 1 cut(s) 264
BssMI GATC 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 179
BstFNI CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
BstHHI GCGC 5 cut(s) 266, 268, 279, 292, 302
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 3 cut(s) 55, 160, 274
BstUI CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 265
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 5 cut(s) 266, 268, 279, 292, 302
Cfr13I GGNCC 1 cut(s) 37
CseI GACGC 2 cut(s) 256, 270
Csp6I GTAC 1 cut(s) 5
CviJI RGCY 6 cut(s) 17, 28, 49, 148, 154, 163
CviKI_1 RGCY 6 cut(s) 17, 28, 49, 148, 154, 163
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 1 cut(s) 41
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
EaeI YGGCCR 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 275
GlaI GCGC 5 cut(s) 265, 267, 278, 291, 301
GluI GCNGC 1 cut(s) 275
HaeIII GGCC 1 cut(s) 148
HapII CCGG 4 cut(s) 149, 170, 210, 242
HgaI GACGC 2 cut(s) 256, 270
HhaI GCGC 5 cut(s) 266, 268, 279, 292, 302
Hin1I GRCGYC 1 cut(s) 78
Hin6I GCGC 5 cut(s) 264, 266, 277, 290, 300
HinP1I GCGC 5 cut(s) 264, 266, 277, 290, 300
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 175
HpaII CCGG 4 cut(s) 149, 170, 210, 242
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 2 cut(s) 82, 88
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 3 cut(s) 83, 233, 250
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 3 cut(s) 78, 99, 112
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 160, 274
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 3 cut(s) 78, 99, 112
Hsp92I GRCGYC 1 cut(s) 78
HspAI GCGC 5 cut(s) 264, 266, 277, 290, 300
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 5 cut(s) 162, 183, 223, 250, 255
Lsp1109I GCAGC 1 cut(s) 286
MaeII ACGT 3 cut(s) 78, 99, 112
MalI GATC 1 cut(s) 86
MauBI CGCGCGCG 1 cut(s) 264
MboI GATC 1 cut(s) 84
MboII GAAGA 2 cut(s) 267, 270
MluCI AATT 2 cut(s) 9, 205
MnlI CCTC 2 cut(s) 28, 245
MspI CCGG 4 cut(s) 149, 170, 210, 242
MvnI CGCG 7 cut(s) 250, 264, 266, 268, 279, 292, 302
MwoI GCNNNNNNNGC 3 cut(s) 55, 160, 274
NdeII GATC 1 cut(s) 84
NlaIV GGNNCC 1 cut(s) 6
PauI GCGCGC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 1 cut(s) 276
Ppu21I YACGTR 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 37
PspPPI RGGWCCY 1 cut(s) 37
PteI GCGCGC 1 cut(s) 264
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 37
SetI ASST 8 cut(s) 19, 30, 39, 51, 81, 102, 115, 156
SinI GGWCC 1 cut(s) 37
Sse9I AATT 2 cut(s) 9, 205
SsiI CCGC 1 cut(s) 225
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 3 cut(s) 81, 102, 115
TasI AATT 2 cut(s) 9, 205
TfiI GAWTC 1 cut(s) 175
TscAI CASTG 1 cut(s) 292
TseI GCWGC 1 cut(s) 274
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 205
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.