MD05G1273200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0002047
Physical Location & Seq
Reverse (-)
40822853 .. 40829124
6272 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1273200.v1.1.491

Sequence Viewer

Length: 165 bp
ATGAAGACAATCCAAGCTCACAGTGAGCTTAGTGAGGTTCCAAGGAAGCTCGGAGTGCTTCGTTGGAAGTTTTTTGACGTAAGAACACGGAGATCGATAAGTTCAAAGTTTGGCCGGAGCTTTCGAGGCGTTTTCCGGCGAATCCCCGGCGAGTTAGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.32

Weight (kDa)

11.91

Isoelectric Point (pI)

69.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 112
AgsI TTSAA 1 cut(s) 105
AluBI AGCT 4 cut(s) 17, 28, 49, 120
AluI AGCT 4 cut(s) 17, 28, 49, 120
AoxI GGCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 11
BcnI CCSGG 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 41, 145
BseCI ATCGAT 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 41, 145
BshFI GGCC 1 cut(s) 114
BshVI ATCGAT 1 cut(s) 95
BsiSI CCGG 3 cut(s) 115, 136, 147
BsnI GGCC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 92
BspANI GGCC 1 cut(s) 114
BspDI ATCGAT 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 39
BssECI CCNNGG 2 cut(s) 41, 145
BssMI GATC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 29
BstKTI GATC 1 cut(s) 95
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 2 cut(s) 55, 126
BstSCI CCNGG 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 11
Bsu15I ATCGAT 1 cut(s) 95
BsuRI GGCC 1 cut(s) 114
BsuTUI ATCGAT 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 28
ClaI ATCGAT 1 cut(s) 95
CviJI RGCY 5 cut(s) 17, 28, 49, 114, 120
CviKI_1 RGCY 5 cut(s) 17, 28, 49, 114, 120
DdeI CTNAG 1 cut(s) 29
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 114
HapII CCGG 3 cut(s) 115, 136, 147
HinfI GANTC 1 cut(s) 141
HpaII CCGG 3 cut(s) 115, 136, 147
Hpy188I TCNGA 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 126
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 78
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 3 cut(s) 128, 149, 160
MaeII ACGT 1 cut(s) 78
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 2 cut(s) 28, 119
MspI CCGG 3 cut(s) 115, 136, 147
MspR9I CCNGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 55, 126
NciI CCSGG 1 cut(s) 147
NdeII GATC 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 147
SetI ASST 6 cut(s) 19, 30, 39, 51, 81, 122
SgeI CNNG 9 cut(s) 26, 54, 62, 99, 127, 137, 148, 158, 159
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 95, 124
TfiI GAWTC 1 cut(s) 141
TscAI CASTG 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.