MD06G1068200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0002047
Physical Location & Seq
Forward (+)
16121453 .. 16121917
465 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1068200.v1.1.491

Sequence Viewer

Length: 303 bp
ATGATTAAAGGCAAAGTACTGTGCATTCAACGGATTTCACGTTTTCTTCTTTTTCTTTTGTTTTTCCGTGAACCTCTCCACTCTGTCTCTCACACTCTCTTTCTCCTTGAAGACCTGATACACTCAACTCTCATTCTCTCTTCCGTCAAGCCTCATTCTCTCTCCCTCTCCCTCAACACACACACACGGCAAAACACAAGTTTTTCGAAAACTTCACAGATCGACGAAAGTAAAATCACCATCTTCTTCGTTTCGACGCTACGAGTCCAACCATACCAATTTCAGGAGTTTTTAAGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.61

Weight (kDa)

9.74

Isoelectric Point (pI)

25.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 2 cut(s) 29, 110
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 229
AsuII TTCGAA 1 cut(s) 206
BarI GAAGNNNNNNTAC 2 cut(s) 102, 134
BbsI GAAGAC 1 cut(s) 117
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 91
BmcAI AGTACT 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 24
Bsp119I TTCGAA 1 cut(s) 206
Bsp143I GATC 1 cut(s) 219
BspT104I TTCGAA 1 cut(s) 206
BssMI GATC 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 206
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 117
CseI GACGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 17
CviJI RGCY 2 cut(s) 151, 297
CviKI_1 RGCY 2 cut(s) 151, 297
CviQI GTAC 1 cut(s) 17
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
FaiI YATR 2 cut(s) 274, 301
HgaI GACGC 1 cut(s) 265
HinfI GANTC 1 cut(s) 264
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 71
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 71
Hpy99I CGWCG 2 cut(s) 227, 259
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 40
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 2 cut(s) 128, 269
MaeII ACGT 1 cut(s) 40
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 5 cut(s) 38, 122, 132, 235, 238
MluCI AATT 1 cut(s) 278
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 4 cut(s) 84, 162, 176, 182
MseI TTAA 2 cut(s) 6, 293
Mva1269I GAATGC 1 cut(s) 24
NdeII GATC 1 cut(s) 219
NspV TTCGAA 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 37
PctI GAATGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 6, 293
Sau3AI GATC 1 cut(s) 219
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 273
SetI ASST 4 cut(s) 43, 76, 117, 299
SfuI TTCGAA 1 cut(s) 206
SgeI CNNG 9 cut(s) 51, 80, 119, 127, 160, 198, 210, 275, 296
Sse9I AATT 1 cut(s) 278
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 1 cut(s) 43
TaqI TCGA 3 cut(s) 206, 222, 254
TasI AATT 1 cut(s) 278
TatI WGTACW 1 cut(s) 16
Tru1I TTAA 2 cut(s) 6, 293
Tru9I TTAA 2 cut(s) 6, 293
TspGWI ACGGA 3 cut(s) 46, 56, 133
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.