pycom01g13060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0002047
Physical Location & Seq
Reverse (-)
13618834 .. 13619541
708 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13060.2

Sequence Viewer

Length: 483 bp
ATGATTAAGTTTCACTGTGCACACACGGATTTTCCTCTCATTTGTCCCTCACTCTCTCTTTTTCCCTCAGCTCCCTCAAACTCACTCAACTCTCATCTCTCCCGTCAAGCTCTCTCTCTCTCCCTCACTCTCAAACACACGGCCAAAACAACAAGTTCATCAAAACTTCACAGATCGACGAAACAAAAATCACCATCTTCTTCGTTTCGACGATACGAGTCCAACCATACCAATTTCAGGACTTTTCAAGCTTATAGGAAGCTTCTTGAGGTCCTAAGGAGGCTTGGAGTAGTTCGTTGGAAGTGTTTGGACGAAAGAACACGGAGAACGACAAGTTCAAAGTTTGGCCGGAGCTTTCGAGGGGTTTTCCGGCGAATCCACGGCGAGTTAGGGGTCGAGGCAGAAATTCCGGCAAAACACCCACCTCCGGCGAAACCAGTCCGGCGACGCGAGGAAGAAGACGCGCGCGTGGGCAGCGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.28

Weight (kDa)

11.21

Isoelectric Point (pI)

69.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 450, 464, 466, 468, 479
AcoI YGGCCR 2 cut(s) 141, 346
AcsI RAATTY 1 cut(s) 405
AfiI CCNNNNNNNGG 2 cut(s) 237, 427
AgsI TTSAA 2 cut(s) 248, 339
AluBI AGCT 5 cut(s) 71, 110, 251, 262, 354
AluI AGCT 5 cut(s) 71, 110, 251, 262, 354
Alw21I GWGCWC 1 cut(s) 22
Alw44I GTGCAC 1 cut(s) 18
AoxI GGCC 2 cut(s) 141, 346
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 474
ApoI RAATTY 1 cut(s) 405
AspLEI GCGC 3 cut(s) 466, 468, 479
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 183
AvaII GGWCC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 22
BbvCI CCTCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 202
BceAI ACGGC 2 cut(s) 156, 397
BisI GCNGC 1 cut(s) 475
BlsI GCNGC 1 cut(s) 476
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 379
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 427
Bse1I ACTGG 1 cut(s) 437
Bse21I CCTNAGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 379
BseLI CCNNNNNNNGG 2 cut(s) 237, 427
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 437
BsePI GCGCGC 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 22
Bsh1236I CGCG 5 cut(s) 450, 464, 466, 468, 479
BshFI GGCC 2 cut(s) 143, 348
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 5 cut(s) 349, 370, 410, 428, 442
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 237, 427
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 2 cut(s) 143, 348
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 173
BspANI GGCC 2 cut(s) 143, 348
BspCNI CTCAG 1 cut(s) 80
BspFNI CGCG 5 cut(s) 450, 464, 466, 468, 479
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 379
BssHII GCGCGC 1 cut(s) 464
BssMI GATC 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 2 cut(s) 67, 275
BstDSI CCRYGG 1 cut(s) 379
BstFNI CGCG 5 cut(s) 450, 464, 466, 468, 479
BstHHI GCGC 3 cut(s) 466, 468, 479
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 474
BstSLI GKGCMC 1 cut(s) 22
BstUI CGCG 5 cut(s) 450, 464, 466, 468, 479
BstV2I GAAGAC 1 cut(s) 465
Bsu36I CCTNAGG 1 cut(s) 275
BsuRI GGCC 2 cut(s) 143, 348
BtgI CCRYGG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 3 cut(s) 466, 468, 479
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 2 cut(s) 456, 470
CviJI RGCY 8 cut(s) 71, 110, 143, 251, 262, 283, 348, 354
CviKI_1 RGCY 8 cut(s) 71, 110, 143, 251, 262, 283, 348, 354
DdeI CTNAG 2 cut(s) 67, 275
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
EaeI YGGCCR 2 cut(s) 141, 346
Eco47I GGWCC 1 cut(s) 271
Eco81I CCTNAGG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 271
FaiI YATR 2 cut(s) 228, 255
FaqI GGGAC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 475
Fsp4HI GCNGC 1 cut(s) 475
GlaI GCGC 3 cut(s) 465, 467, 478
GluI GCNGC 1 cut(s) 475
HaeIII GGCC 2 cut(s) 143, 348
HapII CCGG 5 cut(s) 349, 370, 410, 428, 442
HgaI GACGC 2 cut(s) 456, 470
HhaI GCGC 3 cut(s) 466, 468, 479
Hin6I GCGC 3 cut(s) 464, 466, 477
HinP1I GCGC 3 cut(s) 464, 466, 477
HindIII AAGCTT 2 cut(s) 249, 260
HinfI GANTC 2 cut(s) 218, 375
HpaII CCGG 5 cut(s) 349, 370, 410, 428, 442
HphI GGTGA 1 cut(s) 183
Hpy166II GTNNAC 1 cut(s) 20
Hpy188III TCNNGA 2 cut(s) 238, 266
Hpy8I GTNNAC 1 cut(s) 20
Hpy99I CGWCG 3 cut(s) 181, 213, 450
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 474
HpyF3I CTNAG 2 cut(s) 67, 275
HspAI GCGC 3 cut(s) 464, 466, 477
Kzo9I GATC 1 cut(s) 173
LmnI GCTCC 2 cut(s) 76, 351
LpnPI CCDG 7 cut(s) 223, 362, 383, 423, 441, 450, 455
MalI GATC 1 cut(s) 175
MauBI CGCGCGCG 1 cut(s) 464
MboI GATC 1 cut(s) 173
MboII GAAGA 4 cut(s) 189, 192, 467, 470
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 2 cut(s) 232, 405
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 2 cut(s) 246, 278
MseI TTAA 1 cut(s) 6
MspI CCGG 5 cut(s) 349, 370, 410, 428, 442
MvnI CGCG 5 cut(s) 450, 464, 466, 468, 479
MwoI GCNNNNNNNGC 1 cut(s) 474
NdeII GATC 1 cut(s) 173
PauI GCGCGC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 375
PkrI GCNGC 1 cut(s) 476
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
PteI GCGCGC 1 cut(s) 464
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 475
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 227
SduI GDGCHC 1 cut(s) 22
SetI ASST 7 cut(s) 73, 112, 253, 264, 273, 356, 427
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 2 cut(s) 232, 405
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 4 cut(s) 176, 208, 358, 396
TasI AATT 2 cut(s) 232, 405
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 20
TseI GCWGC 1 cut(s) 474
TspDTI ATGAA 1 cut(s) 147
TspGWI ACGGA 2 cut(s) 41, 337
TspRI CASTG 1 cut(s) 20
VneI GTGCAC 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.