pycom06g17000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0002047
Physical Location & Seq
Forward (+)
21077995 .. 21078778
784 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g17000.1

Sequence Viewer

Length: 633 bp
ATGTGTGACATCCCGTCCCGGAAATATCGAAACGTACATTTGAAATTACAATTTTACCCCCTAGTTCGTTACTTTACGTGTAGTTTTGTGTTGTGTGGTGTTGTAAGACCACACACACTCATACACTCTCTTTCTTTCCCGGGATTCCCTCACCCTTTGTCTATTTTCTGTCTCTTCTCTCTCTCTCTCTCCCAAGCTCCGTTCTTTCTTCTTCTTCCTTCTGAAAACGACACCATCGGACTCGTGAAGTTCGTACGAGTACAACCATACCATTTTCAGGTGAGAAATCCTTCGTTTTCGCGTCGATTCGAGGTAATCCGTTTTGAACACTGTTCATGCGAATTTAATCTAGCTTGTTTTTGGGATTTTGAAGCTCATAGATGTCTTAGTGAGGTCCCAAGGAGCCTCGGAGTACTTCGTTGGAGAAGTTTGGACGTCGGGATCATCGTGGTCAAAGTTGGCCGGAGCTTTCGAGGGGTTTTCCGGCGAAACCACGGCGAGTTAGGGGTCGAGACAGAAATTCCGGCAAAACACTATTTCCGGCGAAACCAGTCCGGCGACGCGAGGAAGAAGATGCGCGCGTGGGCAGCGCGTGAACAGTGCGCGTGGGGGCGCGTGAGAGCTCCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

24.56

Weight (kDa)

10.06

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 438
AccII CGCG 7 cut(s) 301, 563, 579, 581, 592, 605, 615
AclWI GGATC 1 cut(s) 449
AcoI YGGCCR 1 cut(s) 460
AcsI RAATTY 2 cut(s) 341, 519
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 4 cut(s) 36, 255, 261, 414
AfiI CCNNNNNNNGG 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 3 cut(s) 43, 326, 371
AhdI GACNNNNNGTC 1 cut(s) 13
AluBI AGCT 5 cut(s) 197, 353, 374, 468, 623
AluI AGCT 5 cut(s) 197, 353, 374, 468, 623
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 2 cut(s) 176, 506
AlwI GGATC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 139
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 2 cut(s) 341, 519
Asp700I GAANNNNTTC 1 cut(s) 289
AspLEI GCGC 5 cut(s) 579, 581, 592, 605, 615
AspS9I GGNCC 1 cut(s) 394
AsuC2I CCSGG 3 cut(s) 19, 140, 141
AsuHPI GGTGA 2 cut(s) 143, 292
AvaI CYCGRG 1 cut(s) 139
AvaII GGWCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 625
BauI CACGAG 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 1 cut(s) 599
BccI CCATC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 511
BcnI CCSGG 3 cut(s) 19, 140, 141
BcoDI GTCTC 2 cut(s) 176, 506
BfaI CTAG 2 cut(s) 62, 350
BisI GCNGC 1 cut(s) 588
BlsI GCNGC 1 cut(s) 589
BmcAI AGTACT 1 cut(s) 414
Bme1390I CCNGG 3 cut(s) 19, 140, 141
Bme18I GGWCC 1 cut(s) 394
BmeRI GACNNNNNGTC 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 396, 404
BmrFI CCNGG 3 cut(s) 19, 140, 141
BmsI GCATC 1 cut(s) 564
BpuMI CCSGG 3 cut(s) 19, 140, 141
BsaAI YACGTR 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 4 cut(s) 139, 398, 406, 493
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 550
BseDI CCNNGG 4 cut(s) 139, 398, 406, 493
BseGI GGATG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 277
BseNI ACTGG 1 cut(s) 550
BsePI GCGCGC 1 cut(s) 577
BseXI GCAGC 1 cut(s) 599
Bsh1236I CGCG 7 cut(s) 301, 563, 579, 581, 592, 605, 615
BshFI GGCC 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 7 cut(s) 19, 140, 463, 484, 524, 541, 555
BsiWI CGTACG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 176, 506
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 1 cut(s) 462
BsoBI CYCGRG 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 1 cut(s) 441
BspANI GGCC 1 cut(s) 462
BspFNI CGCG 7 cut(s) 301, 563, 579, 581, 592, 605, 615
BspLI GGNNCC 2 cut(s) 396, 404
BspPI GGATC 1 cut(s) 449
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 4 cut(s) 139, 398, 406, 493
BssHII GCGCGC 1 cut(s) 577
BssMI GATC 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 435
BssSI CACGAG 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 398
Bst2BI CACGAG 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 332, 600
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 435
BstBAI YACGTR 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 1 cut(s) 386
BstDSI CCRYGG 1 cut(s) 493
BstF5I GGATG 1 cut(s) 9
BstFNI CGCG 7 cut(s) 301, 563, 579, 581, 592, 605, 615
BstHHI GCGC 5 cut(s) 579, 581, 592, 605, 615
BstKTI GATC 1 cut(s) 444
BstMAI GTCTC 2 cut(s) 176, 506
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstSCI CCNGG 3 cut(s) 17, 138, 139
BstUI CGCG 7 cut(s) 301, 563, 579, 581, 592, 605, 615
BstV1I GCAGC 1 cut(s) 599
BsuRI GGCC 1 cut(s) 462
BtgI CCRYGG 1 cut(s) 493
BtsCI GGATG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 328, 605
Cac8I GCNNGC 1 cut(s) 579
CfoI GCGC 5 cut(s) 579, 581, 592, 605, 615
Cfr13I GGNCC 1 cut(s) 394
Cfr9I CCCGGG 1 cut(s) 139
CseI GACGC 2 cut(s) 290, 569
Csp6I GTAC 4 cut(s) 35, 254, 260, 413
CviAII CATG 1 cut(s) 336
CviJI RGCY 7 cut(s) 197, 353, 374, 405, 462, 468, 623
CviKI_1 RGCY 7 cut(s) 197, 353, 374, 405, 462, 468, 623
CviQI GTAC 4 cut(s) 35, 254, 260, 413
DdeI CTNAG 1 cut(s) 386
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
DriI GACNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 179
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 623
Eco130I CCWWGG 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 394
Eco53kI GAGCTC 1 cut(s) 623
Eco88I CYCGRG 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 623
EcoO109I RGGNCCY 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 398
EcoT38I GRGCYC 1 cut(s) 625
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 1 cut(s) 339
FaiI YATR 4 cut(s) 122, 268, 337, 378
FaqI GGGAC 1 cut(s) 380
FatI CATG 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 588
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 1 cut(s) 588
FspBI CTAG 2 cut(s) 62, 350
GlaI GCGC 5 cut(s) 578, 580, 591, 604, 614
GluI GCNGC 1 cut(s) 588
HaeIII GGCC 1 cut(s) 462
HapII CCGG 7 cut(s) 19, 140, 463, 484, 524, 541, 555
HgaI GACGC 2 cut(s) 290, 569
HhaI GCGC 5 cut(s) 579, 581, 592, 605, 615
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 1 cut(s) 339
Hin6I GCGC 5 cut(s) 577, 579, 590, 603, 613
HinP1I GCGC 5 cut(s) 577, 579, 590, 603, 613
HinfI GANTC 3 cut(s) 144, 240, 306
HpaII CCGG 7 cut(s) 19, 140, 463, 484, 524, 541, 555
HphI GGTGA 2 cut(s) 143, 292
Hpy166II GTNNAC 1 cut(s) 596
Hpy188I TCNGA 3 cut(s) 223, 239, 410
Hpy188III TCNNGA 3 cut(s) 244, 439, 511
Hpy8I GTNNAC 1 cut(s) 596
Hpy99I CGWCG 3 cut(s) 306, 440, 563
HpyAV CCTTC 2 cut(s) 228, 300
HpyCH4III ACNGT 2 cut(s) 332, 600
HpyCH4IV ACGT 3 cut(s) 33, 77, 435
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 3 cut(s) 33, 77, 435
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 1 cut(s) 339
HspAI GCGC 5 cut(s) 577, 579, 590, 603, 613
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 4 cut(s) 202, 402, 465, 628
LpnPI CCDG 9 cut(s) 32, 153, 263, 476, 497, 537, 554, 563, 568
Lsp1109I GCAGC 1 cut(s) 599
LweI GCATC 1 cut(s) 564
MaeI CTAG 2 cut(s) 62, 350
MaeII ACGT 3 cut(s) 33, 77, 435
MaeIII GTNAC 2 cut(s) 5, 68
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 6 cut(s) 166, 200, 203, 206, 580, 583
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 5 cut(s) 44, 50, 341, 519, 628
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 6 cut(s) 159, 304, 385, 416, 467, 558
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 1 cut(s) 345
MspI CCGG 7 cut(s) 19, 140, 463, 484, 524, 541, 555
MspR9I CCNGG 3 cut(s) 19, 140, 141
MvnI CGCG 7 cut(s) 301, 563, 579, 581, 592, 605, 615
MwoI GCNNNNNNNGC 1 cut(s) 587
NciI CCSGG 3 cut(s) 19, 140, 141
NdeII GATC 1 cut(s) 441
NlaIII CATG 1 cut(s) 339
NlaIV GGNNCC 2 cut(s) 396, 404
NmuCI GTSAC 1 cut(s) 5
PauI GCGCGC 1 cut(s) 577
PcsI WCGNNNNNNNCGW 2 cut(s) 249, 444
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 2 cut(s) 144, 306
Pfl23II CGTACG 1 cut(s) 253
PfoI TCCNGGA 1 cut(s) 17
PkrI GCNGC 1 cut(s) 589
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Ppu21I YACGTR 1 cut(s) 78
PpuMI RGGWCCY 1 cut(s) 394
Psp124BI GAGCTC 1 cut(s) 625
Psp5II RGGWCCY 1 cut(s) 394
PspLI CGTACG 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 396, 404
PspPI GGNCC 1 cut(s) 394
PspPPI RGGWCCY 1 cut(s) 394
PteI GCGCGC 1 cut(s) 577
RsaI GTAC 4 cut(s) 36, 255, 261, 414
RsaNI GTAC 4 cut(s) 35, 254, 260, 413
SacI GAGCTC 1 cut(s) 625
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 1 cut(s) 588
Sau3AI GATC 1 cut(s) 441
Sau96I GGNCC 1 cut(s) 394
ScaI AGTACT 1 cut(s) 414
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 3 cut(s) 19, 140, 141
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 1 cut(s) 564
SinI GGWCC 1 cut(s) 394
SmaI CCCGGG 1 cut(s) 141
Sse9I AATT 5 cut(s) 44, 50, 341, 519, 628
SspMI CTAG 2 cut(s) 62, 350
SstI GAGCTC 1 cut(s) 625
StyD4I CCNGG 3 cut(s) 17, 138, 139
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 2 cut(s) 332, 600
TaiI ACGT 3 cut(s) 36, 80, 438
TaqI TCGA 5 cut(s) 28, 304, 309, 472, 510
TasI AATT 5 cut(s) 44, 50, 341, 519, 628
TatI WGTACW 2 cut(s) 259, 412
TfiI GAWTC 2 cut(s) 144, 306
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 2 cut(s) 335, 605
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 587
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 2 cut(s) 189, 308
TspMI CCCGGG 1 cut(s) 139
TspRI CASTG 2 cut(s) 335, 605
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 2 cut(s) 341, 519
XmaI CCCGGG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 2 cut(s) 62, 350
ZraI GACGTC 1 cut(s) 436
ZrmI AGTACT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.