MD13G1055300.v1.1

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0001272
Physical Location & Seq
Reverse (-)
3867643 .. 3871210
3568 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1055300.v1.1.491

Sequence Viewer

Length: 1143 bp
ATGCCCCCGGTGAGAAATTTGAGTACCAGGCCGAGGTGGGTATCTCGGCTTATGGATTTGATAGTTCATAGTCTATACAGCGACACGGAGGTGTTCCTTAGGGAGCTTGTGAGTAATGCTAGTGATGTTTTGGACAAGTTGAGATTTTTGAGTGTGACAGAGCCCTCTCTCTGCTTGGAGATGCTGCTGAGCTACAGATTCGCATCAAACCTGATCCAGACAATGGGACTATCACTATATTGTATGTTGGATACTGGTATTGGAATTACAAAAGAGGAACTCATTGACTGCCTTGGAACCATTGCCCAGAGTGGTACTTCAAAGTTTTTGAAGGCTCTGAAGGAAAACAAGGATCTTGGTGCAGACAATGGCTTGATTGGTCAATTTGGTGTTGGTTTCTATTCTGCTTTTCTTGTTGCTGAGAAGGTTGTTGTCTCTACAAAAAGCCCAAGGTCAGATAAGCAGTATGTTTGGGAAGCAGCAGCTGACAGTAGCTCTTATGTTATTAAGGAAGAAACTAATCCGGAAAATCTCATACAGCGGGGAACACAGATAACCCTCTATTTAAGGCCGGATGACAAGTATGAATTCTCAGAGCCAGCCCGGATCGAGGGTTTAGTGAAGAATTACTCACAGTTTGTTTCCTTTCCCATCTATACATGGCAAGAAAAATCAAGGACAGTGGAGGTGGAAGAGGAGGAAGAACCAAAAGAAGGAGGAGAACCAAAACCAGAGGGTGAGAAGAAAAAGAAGACAAAAACTGAGAAGTATTGGGATTGGGAATTAGCCAATGAAACAAAGCCTATATGGATGCGGTGTGCAAAGGAAGTTCAAAAAGAGGAGTATCAAGAATTTTACAAGAAAACTTTTAATGAGTTCCTGGATCCACTTGGATACACTCACTTCACCACTGAGGATGAGGTGGAGTTCAGGAGTGTTCTTTATATTCCTGGAATGGGGCCTCTTAACAATGAGGATGTTGTAAATCCAAAAACAAAGAATATACGTTTGTGTGTGAAGCGGGTATTTATCTCAGATGATTTTGATGGCGAACTGGTAAGTTCGACATGTTGGAATCCATGGGCTCCATCTGCTCTCGAGGTAAGTACCTTCGACTCATTCAATGGTTACTCGAGCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

381

Amino Acids

43.56

Weight (kDa)

4.89

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 80 - 173 8.1e-06 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90 PF00183 196 - 349 6.9e-46 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 223
AccIII TCCGGA 1 cut(s) 523
AciI CCGC 3 cut(s) 541, 814, 1021
AclWI GGATC 5 cut(s) 208, 360, 614, 878, 891
AcsI RAATTY 3 cut(s) 16, 587, 851
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 3 cut(s) 25, 316, 1108
AfiI CCNNNNNNNGG 5 cut(s) 33, 223, 610, 713, 956
AflIII ACRYGT 1 cut(s) 1067
AgsI TTSAA 4 cut(s) 321, 331, 833, 1123
AjnI CCWGG 3 cut(s) 26, 879, 949
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 4 cut(s) 106, 192, 485, 495
AluI AGCT 4 cut(s) 106, 192, 485, 495
Alw26I GTCTC 1 cut(s) 439
AlwI GGATC 5 cut(s) 208, 360, 614, 878, 891
AlwNI CAGNNNCTG 1 cut(s) 485
Ama87I CYCGRG 2 cut(s) 1097, 1132
Aor13HI TCCGGA 1 cut(s) 523
AoxI GGCC 3 cut(s) 29, 569, 959
ApeKI GCWGC 3 cut(s) 184, 479, 482
ApoI RAATTY 3 cut(s) 16, 587, 851
AspS9I GGNCC 1 cut(s) 959
AsuC2I CCSGG 2 cut(s) 8, 604
AsuHPI GGTGA 3 cut(s) 22, 749, 898
AvaI CYCGRG 2 cut(s) 1097, 1132
AxyI CCTNAGG 1 cut(s) 98
BamHI GGATCC 1 cut(s) 883
BanII GRGCYC 2 cut(s) 165, 1087
BbsI GAAGAC 1 cut(s) 758
BbvI GCAGC 3 cut(s) 171, 491, 494
BccI CCATC 3 cut(s) 659, 1040, 1096
BciT130I CCWGG 3 cut(s) 28, 881, 951
BciVI GTATCC 2 cut(s) 244, 887
BcnI CCSGG 2 cut(s) 8, 604
BcoDI GTCTC 1 cut(s) 439
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 193
BfuI GTATCC 2 cut(s) 244, 887
BisI GCNGC 3 cut(s) 185, 480, 483
BlpI GCTNAGC 1 cut(s) 188
BlsI GCNGC 3 cut(s) 186, 481, 484
Bme1390I CCNGG 5 cut(s) 8, 28, 604, 881, 951
BmeT110I CYCGRG 2 cut(s) 1097, 1132
BmgT120I GGNCC 1 cut(s) 959
BmiI GGNNCC 4 cut(s) 298, 885, 960, 1086
BmrFI CCNGG 5 cut(s) 8, 28, 604, 881, 951
BmsI GCATC 3 cut(s) 171, 212, 801
BpiI GAAGAC 1 cut(s) 758
Bpu1102I GCTNAGC 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 8, 604
BsaBI GATNNNNATC 1 cut(s) 202
BsaJI CCNNGG 5 cut(s) 6, 32, 292, 449, 1079
BsaWI WCCGGW 1 cut(s) 523
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 223, 610, 713, 956
Bse1I ACTGG 3 cut(s) 259, 1059, 1138
Bse21I CCTNAGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 300
Bse8I GATNNNNATC 1 cut(s) 202
BseAI TCCGGA 1 cut(s) 523
BseBI CCWGG 3 cut(s) 28, 881, 951
BseDI CCNNGG 5 cut(s) 6, 32, 292, 449, 1079
BseGI GGATG 4 cut(s) 580, 816, 922, 982
BseJI GATNNNNATC 1 cut(s) 202
BseLI CCNNNNNNNGG 5 cut(s) 33, 223, 610, 713, 956
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 6 cut(s) 179, 411, 606, 753, 903, 1047
BseNI ACTGG 3 cut(s) 259, 1059, 1138
BseRI GAGGAG 3 cut(s) 710, 732, 854
BseXI GCAGC 3 cut(s) 171, 491, 494
BsgI GTGCAG 1 cut(s) 381
BshFI GGCC 3 cut(s) 31, 571, 961
BsiHKCI CYCGRG 2 cut(s) 1097, 1132
BsiSI CCGG 4 cut(s) 8, 524, 572, 604
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 5 cut(s) 33, 223, 610, 713, 956
BsmAI GTCTC 1 cut(s) 439
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 3 cut(s) 31, 571, 961
BsoBI CYCGRG 2 cut(s) 1097, 1132
Bsp1286I GDGCHC 2 cut(s) 165, 1087
Bsp13I TCCGGA 1 cut(s) 523
Bsp143I GATC 4 cut(s) 213, 352, 606, 883
Bsp1720I GCTNAGC 1 cut(s) 188
Bsp19I CCATGG 1 cut(s) 1079
BspACI CCGC 3 cut(s) 541, 814, 1021
BspANI GGCC 3 cut(s) 31, 571, 961
BspCNI CTCAG 6 cut(s) 180, 412, 605, 754, 904, 1046
BspEI TCCGGA 1 cut(s) 523
BspLI GGNNCC 4 cut(s) 298, 885, 960, 1086
BspPI GGATC 5 cut(s) 208, 360, 614, 878, 891
BsrDI GCAATG 1 cut(s) 300
BsrI ACTGG 3 cut(s) 259, 1059, 1138
BssECI CCNNGG 5 cut(s) 6, 32, 292, 449, 1079
BssMI GATC 4 cut(s) 213, 352, 606, 883
BssT1I CCWWGG 3 cut(s) 292, 449, 1079
Bst2UI CCWGG 3 cut(s) 28, 881, 951
Bst4CI ACNGT 3 cut(s) 491, 636, 682
Bst6I CTCTTC 1 cut(s) 687
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 7 cut(s) 98, 188, 420, 592, 762, 912, 1033
BstDSI CCRYGG 1 cut(s) 1079
BstF5I GGATG 4 cut(s) 580, 816, 922, 982
BstKTI GATC 4 cut(s) 216, 355, 609, 886
BstMAI GTCTC 1 cut(s) 439
BstMBI GATC 4 cut(s) 213, 352, 606, 883
BstMWI GCNNNNNNNGC 1 cut(s) 1091
BstNI CCWGG 3 cut(s) 28, 881, 951
BstNSI RCATGY 1 cut(s) 1071
BstSCI CCNGG 5 cut(s) 6, 26, 602, 879, 949
BstSFI CTRYAG 1 cut(s) 193
BstV1I GCAGC 3 cut(s) 171, 491, 494
BstV2I GAAGAC 1 cut(s) 758
BstX2I RGATCY 2 cut(s) 352, 883
BstYI RGATCY 2 cut(s) 352, 883
Bsu36I CCTNAGG 1 cut(s) 98
BsuI GTATCC 2 cut(s) 244, 887
BsuRI GGCC 3 cut(s) 31, 571, 961
BtgI CCRYGG 1 cut(s) 1079
BtsCI GGATG 4 cut(s) 580, 816, 922, 982
BtsIMutI CAGTG 2 cut(s) 687, 909
Cac8I GCNNGC 1 cut(s) 600
CaiI CAGNNNCTG 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 959
Csp6I GTAC 3 cut(s) 24, 315, 1107
CspCI CAANNNNNGTGG 2 cut(s) 663, 698
CviAII CATG 3 cut(s) 660, 1068, 1080
CviQI GTAC 3 cut(s) 24, 315, 1107
DdeI CTNAG 7 cut(s) 98, 188, 420, 592, 762, 912, 1033
DpnI GATC 4 cut(s) 215, 354, 608, 885
DpnII GATC 4 cut(s) 213, 352, 606, 883
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 3 cut(s) 292, 449, 1079
Eco24I GRGCYC 2 cut(s) 165, 1087
Eco57I CTGAAG 1 cut(s) 359
Eco81I CCTNAGG 1 cut(s) 98
Eco88I CYCGRG 2 cut(s) 1097, 1132
EcoO109I RGGNCCY 1 cut(s) 959
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 3 cut(s) 26, 879, 949
EcoT14I CCWWGG 3 cut(s) 292, 449, 1079
EcoT38I GRGCYC 2 cut(s) 165, 1087
ErhI CCWWGG 3 cut(s) 292, 449, 1079
FaeI CATG 3 cut(s) 663, 1071, 1083
FaqI GGGAC 1 cut(s) 240
FatI CATG 3 cut(s) 659, 1067, 1079
FauI CCCGC 2 cut(s) 534, 1014
Fnu4HI GCNGC 3 cut(s) 185, 480, 483
FokI GGATG 4 cut(s) 587, 823, 929, 989
FriOI GRGCYC 2 cut(s) 165, 1087
Fsp4HI GCNGC 3 cut(s) 185, 480, 483
FspBI CTAG 1 cut(s) 120
GluI GCNGC 3 cut(s) 185, 480, 483
HaeIII GGCC 3 cut(s) 31, 571, 961
HapII CCGG 4 cut(s) 8, 524, 572, 604
Hin1II CATG 3 cut(s) 663, 1071, 1083
HinfI GANTC 3 cut(s) 198, 1075, 1115
HpaII CCGG 4 cut(s) 8, 524, 572, 604
HphI GGTGA 3 cut(s) 22, 749, 898
Hpy188I TCNGA 4 cut(s) 339, 457, 595, 1036
Hpy188III TCNNGA 5 cut(s) 217, 524, 848, 931, 1097
HpyAV CCTTC 5 cut(s) 325, 334, 418, 707, 1120
HpyCH4III ACNGT 3 cut(s) 491, 636, 682
HpyCH4IV ACGT 1 cut(s) 1006
HpyCH4V TGCA 2 cut(s) 362, 821
HpyF10VI GCNNNNNNNGC 1 cut(s) 1091
HpyF3I CTNAG 7 cut(s) 98, 188, 420, 592, 762, 912, 1033
HpySE526I ACGT 1 cut(s) 1006
Hsp92II CATG 3 cut(s) 663, 1071, 1083
Kpn2I TCCGGA 1 cut(s) 523
Kzo9I GATC 4 cut(s) 213, 352, 606, 883
LmnI GCTCC 2 cut(s) 103, 1090
Lsp1109I GCAGC 3 cut(s) 171, 491, 494
LweI GCATC 3 cut(s) 171, 212, 801
MaeI CTAG 1 cut(s) 120
MaeII ACGT 1 cut(s) 1006
MaeIII GTNAC 2 cut(s) 154, 1127
MalI GATC 4 cut(s) 215, 354, 608, 885
MboI GATC 4 cut(s) 213, 352, 606, 883
MboII GAAGA 6 cut(s) 524, 634, 704, 713, 754, 763
MflI RGATCY 2 cut(s) 352, 883
MhlI GDGCHC 2 cut(s) 165, 1087
MluCI AATT 7 cut(s) 16, 264, 383, 587, 625, 782, 851
MlyI GAGTC 1 cut(s) 1109
MmeI TCCRAC 2 cut(s) 228, 1052
MroI TCCGGA 1 cut(s) 523
MseI TTAA 4 cut(s) 507, 566, 870, 966
MslI CAYNNNNRTG 1 cut(s) 89
MspA1I CMGCKG 2 cut(s) 485, 541
MspI CCGG 4 cut(s) 8, 524, 572, 604
MspR9I CCNGG 5 cut(s) 8, 28, 604, 881, 951
MvaI CCWGG 3 cut(s) 28, 881, 951
MwoI GCNNNNNNNGC 1 cut(s) 1091
NciI CCSGG 2 cut(s) 8, 604
NcoI CCATGG 1 cut(s) 1079
NdeII GATC 4 cut(s) 213, 352, 606, 883
NlaIII CATG 3 cut(s) 663, 1071, 1083
NlaIV GGNNCC 4 cut(s) 298, 885, 960, 1086
NmeAIII GCCGAG 2 cut(s) 25, 57
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 1071
OliI CACNNNNGTG 1 cut(s) 89
PaeR7I CTCGAG 2 cut(s) 1097, 1132
PciI ACATGT 1 cut(s) 1067
PfeI GAWTC 2 cut(s) 198, 1075
PflMI CCANNNNNTGG 1 cut(s) 223
PfoI TCCNGGA 2 cut(s) 879, 949
PkrI GCNGC 3 cut(s) 186, 481, 484
PleI GAGTC 1 cut(s) 1109
PpsI GAGTC 1 cut(s) 1109
PscI ACATGT 1 cut(s) 1067
Psp6I CCWGG 3 cut(s) 26, 879, 949
PspGI CCWGG 3 cut(s) 26, 879, 949
PspN4I GGNNCC 4 cut(s) 298, 885, 960, 1086
PspPI GGNCC 1 cut(s) 959
PspXI VCTCGAGB 1 cut(s) 1132
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 2 cut(s) 352, 883
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 3 cut(s) 25, 316, 1108
RsaNI GTAC 3 cut(s) 24, 315, 1107
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 4 cut(s) 507, 566, 870, 966
SatI GCNGC 3 cut(s) 185, 480, 483
Sau3AI GATC 4 cut(s) 213, 352, 606, 883
Sau96I GGNCC 1 cut(s) 959
SchI GAGTC 1 cut(s) 1109
ScrFI CCNGG 5 cut(s) 8, 28, 604, 881, 951
SduI GDGCHC 2 cut(s) 165, 1087
SfaNI GCATC 3 cut(s) 171, 212, 801
SfcI CTRYAG 1 cut(s) 193
Sfr274I CTCGAG 2 cut(s) 1097, 1132
SlaI CTCGAG 2 cut(s) 1097, 1132
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 2 cut(s) 1097, 1132
SmoI CTYRAG 2 cut(s) 1097, 1132
Sse9I AATT 7 cut(s) 16, 264, 383, 587, 625, 782, 851
SsiI CCGC 3 cut(s) 541, 814, 1021
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 5 cut(s) 6, 26, 602, 879, 949
StyI CCWWGG 3 cut(s) 292, 449, 1079
TaaI ACNGT 3 cut(s) 491, 636, 682
TaiI ACGT 1 cut(s) 1009
TaqI TCGA 5 cut(s) 609, 1064, 1098, 1113, 1133
TasI AATT 7 cut(s) 16, 264, 383, 587, 625, 782, 851
TfiI GAWTC 2 cut(s) 198, 1075
Tru1I TTAA 4 cut(s) 507, 566, 870, 966
Tru9I TTAA 4 cut(s) 507, 566, 870, 966
TscAI CASTG 2 cut(s) 687, 916
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 3 cut(s) 184, 479, 482
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 56, 600, 807
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 2 cut(s) 687, 916
Van91I CCANNNNNTGG 1 cut(s) 223
XapI RAATTY 3 cut(s) 16, 587, 851
XceI RCATGY 1 cut(s) 1071
XhoI CTCGAG 2 cut(s) 1097, 1132
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.