Rroxscaffold_2G00110100

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001272
Physical Location & Seq
Forward (+)
34332596 .. 34335721
3126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110100.1

Sequence Viewer

Length: 804 bp
ATGGATTTGATAGTGCACAGTCTATACAGCCACAAGAAGGTGTTCCTTAGGGAACGTGTTAGTAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTGTGACTGAGCCCTCGCTGCTTGGAGATGCTGTTGAACTGCAGATACGCATCAAACCCGACCCAGAGAATGGGACTATCACTATAACGGATACTGGTATTGGGATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTGACGGCACTGAAGGAAAATAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTCTTCTTGTTGCTGACAAGGTGCAGTTCTTCATACCCAGAAAACTACGAAACATGCATGAACTTCTTCCAAGTTCTCAGAAGTTTGTTTCAAGTGTTAATTTCTCCATTCTAGGTAAAAAGAGGGGAGATAGCAACTGTATGCAAGTGTGGCACGAATACTGGCATAAGACGCACAGCTCCCTCTTTCAAGCTAATGGAGGAAATGGAAAGCGTACTAATGGTCCTGCCGACGACGAAGAGAATCCTCAAAAAGAGGCTACTCCAGGAGCATCAACTTCTGCAGTCATGAGGTCACAACCAAGACATGCTACAAAAGAAATATCAAATGCAAAGAGTTCAAGATCAACCAATGGTAATTTCCTTACTGAGAAATTGTCTATTGTTGAAGAGGAGGAAGAACCAAAGGAAGGAGAAGAACCAAAGCCAGAGGTAATTGACATGCAATCTGAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

267

Amino Acids

29.49

Weight (kDa)

5.72

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 42 - 124 9.1e-07 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 170
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 3 cut(s) 238, 256, 562
AfiI CCNNNNNNNGG 3 cut(s) 37, 170, 755
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 6 cut(s) 137, 261, 438, 536, 687, 734
AjnI CCWGG 1 cut(s) 610
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AluBI AGCT 2 cut(s) 525, 539
AluI AGCT 2 cut(s) 525, 539
Alw21I GWGCWC 1 cut(s) 18
Alw44I GTGCAC 1 cut(s) 14
AlwI GGATC 1 cut(s) 300
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 263
Asp700I GAANNNNTTC 2 cut(s) 41, 411
Asp718I GGTACC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 569
AvaII GGWCC 1 cut(s) 569
AxyI CCTNAGG 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 1 cut(s) 184
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 2 cut(s) 140, 627
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 612
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 612
BmsI GCATC 4 cut(s) 64, 118, 159, 626
BpmI CTGGAG 1 cut(s) 594
BsaBI GATNNNNATC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 170, 755
Bse1I ACTGG 2 cut(s) 199, 512
Bse21I CCTNAGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 149
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 3 cut(s) 37, 170, 755
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 4 cut(s) 99, 260, 437, 705
BseNI ACTGG 2 cut(s) 199, 512
BseRI GAGGAG 1 cut(s) 752
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 105
BsgI GTGCAG 2 cut(s) 321, 389
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 18
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 3 cut(s) 37, 170, 755
BsmFI GGGAC 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 18, 114
Bsp143I GATC 2 cut(s) 292, 689
BspCNI CTCAG 4 cut(s) 100, 259, 436, 706
BspHI TCATGA 1 cut(s) 633
BspLI GGNNCC 1 cut(s) 238
BspMAI CTGCAG 2 cut(s) 144, 631
BspPI GGATC 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 2 cut(s) 199, 512
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 2 cut(s) 292, 689
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 3 cut(s) 20, 311, 485
Bst6I CTCTTC 3 cut(s) 354, 579, 729
BstAPI GCANNNNNTGC 1 cut(s) 74
BstDEI CTNAG 5 cut(s) 47, 108, 246, 423, 714
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 2 cut(s) 295, 692
BstMBI GATC 2 cut(s) 292, 689
BstMWI GCNNNNNNNGC 4 cut(s) 74, 118, 496, 517
BstNI CCWGG 1 cut(s) 612
BstNSI RCATGY 3 cut(s) 403, 656, 790
BstSCI CCNGG 1 cut(s) 610
BstSFI CTRYAG 2 cut(s) 140, 627
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
Bsu36I CCTNAGG 1 cut(s) 47
BsuI GTATCC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 275
CciI TCATGA 1 cut(s) 633
Cfr13I GGNCC 1 cut(s) 569
CseI GACGC 1 cut(s) 526
Csp6I GTAC 3 cut(s) 237, 255, 561
CviAII CATG 5 cut(s) 400, 404, 634, 653, 787
CviJI RGCY 6 cut(s) 30, 112, 525, 539, 605, 772
CviKI_1 RGCY 6 cut(s) 30, 112, 525, 539, 605, 772
CviQI GTAC 3 cut(s) 237, 255, 561
DdeI CTNAG 5 cut(s) 47, 108, 246, 423, 714
DpnI GATC 2 cut(s) 294, 691
DpnII GATC 2 cut(s) 292, 689
Eam1104I CTCTTC 3 cut(s) 354, 579, 729
EarI CTCTTC 3 cut(s) 354, 579, 729
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 299
Eco81I CCTNAGG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 405
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 5 cut(s) 403, 407, 637, 656, 790
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FaqI GGGAC 1 cut(s) 187
FatI CATG 5 cut(s) 399, 403, 633, 652, 786
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 458
GluI GCNGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 594
HgaI GACGC 1 cut(s) 526
Hin1II CATG 5 cut(s) 403, 407, 637, 656, 790
HinfI GANTC 1 cut(s) 589
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 249, 426, 796
Hpy188III TCNNGA 3 cut(s) 268, 634, 687
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 2 cut(s) 581, 584
HpyAV CCTTC 4 cut(s) 31, 205, 274, 749
HpyCH4III ACNGT 3 cut(s) 20, 311, 485
HpyCH4IV ACGT 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 118, 496, 517
HpyF3I CTNAG 5 cut(s) 47, 108, 246, 423, 714
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 5 cut(s) 403, 407, 637, 656, 790
KpnI GGTACC 1 cut(s) 240
Kzo9I GATC 2 cut(s) 292, 689
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 2 cut(s) 530, 614
LpnPI CCDG 8 cut(s) 177, 180, 397, 493, 585, 597, 624, 786
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 4 cut(s) 64, 118, 159, 626
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 2 cut(s) 103, 639
MalI GATC 2 cut(s) 294, 691
MboI GATC 2 cut(s) 292, 689
MboII GAAGA 7 cut(s) 341, 367, 404, 596, 746, 755, 773
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 2 cut(s) 18, 114
MluCI AATT 6 cut(s) 263, 323, 445, 703, 719, 780
Mph1103I ATGCAT 1 cut(s) 405
MroXI GAANNNNTTC 2 cut(s) 41, 411
MseI TTAA 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 612
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 4 cut(s) 74, 118, 496, 517
NdeII GATC 2 cut(s) 292, 689
NlaIII CATG 5 cut(s) 403, 407, 637, 656, 790
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 103, 639
NsiI ATGCAT 1 cut(s) 405
NspI RCATGY 3 cut(s) 403, 656, 790
PagI TCATGA 1 cut(s) 633
PciSI GCTCTTC 1 cut(s) 354
PdmI GAANNNNTTC 2 cut(s) 41, 411
PfeI GAWTC 1 cut(s) 589
PflMI CCANNNNNTGG 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 610
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 569
PsrI GAACNNNNNNTAC 2 cut(s) 129, 161
PstI CTGCAG 2 cut(s) 144, 631
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 3 cut(s) 238, 256, 562
RsaNI GTAC 3 cut(s) 237, 255, 561
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 2 cut(s) 292, 689
Sau96I GGNCC 1 cut(s) 569
ScrFI CCNGG 1 cut(s) 612
SduI GDGCHC 2 cut(s) 18, 114
SetI ASST 8 cut(s) 42, 58, 369, 463, 527, 541, 641, 780
SfaNI GCATC 4 cut(s) 64, 118, 159, 626
SfcI CTRYAG 2 cut(s) 140, 627
SinI GGWCC 1 cut(s) 569
Sse9I AATT 6 cut(s) 263, 323, 445, 703, 719, 780
SspMI CTAG 1 cut(s) 458
StyD4I CCNGG 1 cut(s) 610
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 20, 311, 485
TaiI ACGT 1 cut(s) 58
TasI AATT 6 cut(s) 263, 323, 445, 703, 719, 780
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 2 cut(s) 103, 639
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 2 cut(s) 103, 639
TspDTI ATGAA 2 cut(s) 367, 420
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 282
Van91I CCANNNNNTGG 1 cut(s) 170
VneI GTGCAC 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 1 cut(s) 263
XceI RCATGY 3 cut(s) 403, 656, 790
XmnI GAANNNNTTC 2 cut(s) 41, 411
XspI CTAG 1 cut(s) 458
Zsp2I ATGCAT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.