Rh3CG308200

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001272
Physical Location & Seq
Reverse (-)
32248954 .. 32249753
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG308200.1

Sequence Viewer

Length: 183 bp
ATGCAGATCAAACTATATTTAAGGCCTGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGGGTTGATGTTAAACAAGGAAGGGTATGCTTCTATAGGAGGTGGTTCACCCTTGTGTAAGATGACAGATGAGCAGGTAGATATAATGCGGCTGAGTCTGTTCTGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

60

Amino Acids

6.79

Weight (kDa)

5.14

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 70
AciI CCGC 1 cut(s) 160
AclWI GGATC 2 cut(s) 55, 68
AfiI CCNNNNNNNGG 1 cut(s) 70
AleI CACNNNNGTG 1 cut(s) 124
AlwI GGATC 2 cut(s) 55, 68
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 111
BamHI GGATCC 1 cut(s) 60
BcnI CCSGG 1 cut(s) 58
BfmI CTRYAG 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 60, 155
BshFI GGCC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 70
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 2 cut(s) 6, 60
BspACI CCGC 1 cut(s) 160
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 2 cut(s) 59, 156
BspHI TCATGA 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 62
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 2 cut(s) 55, 68
BssMI GATC 2 cut(s) 6, 60
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 46, 164
BstKTI GATC 2 cut(s) 9, 63
BstMBI GATC 2 cut(s) 6, 60
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 1 cut(s) 25
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 53
CciI TCATGA 1 cut(s) 179
CviAII CATG 1 cut(s) 180
CviJI RGCY 3 cut(s) 25, 52, 163
CviKI_1 RGCY 3 cut(s) 25, 52, 163
DdeI CTNAG 2 cut(s) 46, 164
DpnI GATC 2 cut(s) 8, 62
DpnII GATC 2 cut(s) 6, 60
Eco147I AGGCCT 1 cut(s) 25
FaeI CATG 1 cut(s) 183
FaiI YATR 6 cut(s) 16, 39, 99, 107, 155, 181
FatI CATG 1 cut(s) 179
Fnu4HI GCNGC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 58
Hin1II CATG 1 cut(s) 183
HinfI GANTC 1 cut(s) 166
HpaII CCGG 1 cut(s) 58
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 64, 180
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 86
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 46, 164
Hsp92II CATG 1 cut(s) 183
Kzo9I GATC 2 cut(s) 6, 60
LpnPI CCDG 5 cut(s) 39, 66, 71, 77, 131
MalI GATC 2 cut(s) 8, 62
MboI GATC 2 cut(s) 6, 60
MflI RGATCY 1 cut(s) 60
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 1 cut(s) 104
MseI TTAA 2 cut(s) 20, 83
MslI CAYNNNNRTG 1 cut(s) 124
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 58
NciI CCSGG 1 cut(s) 58
NdeII GATC 2 cut(s) 6, 60
NlaIII CATG 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 62
OliI CACNNNNGTG 1 cut(s) 124
PagI TCATGA 1 cut(s) 179
PceI AGGCCT 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 124
SaqAI TTAA 2 cut(s) 20, 83
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 2 cut(s) 6, 60
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 58
SetI ASST 2 cut(s) 115, 150
SfcI CTRYAG 1 cut(s) 105
SgeI CNNG 9 cut(s) 38, 46, 65, 69, 70, 76, 100, 136, 158
SmiMI CAYNNNNRTG 1 cut(s) 124
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 1 cut(s) 160
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 56
TauI GCSGC 1 cut(s) 163
Tru1I TTAA 2 cut(s) 20, 83
Tru9I TTAA 2 cut(s) 20, 83
TspDTI ATGAA 1 cut(s) 168
Van91I CCANNNNNTGG 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.