Rh5DG106600

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001272
Physical Location & Seq
Forward (+)
9703253 .. 9704847
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG106600.1

Sequence Viewer

Length: 438 bp
ATGTTAGGTTTCAGAAACCCCAACAAGGCCTTGAACCTCAGAAGTGCCTTTGTGCCCCAAAATGGGCTCAGAAAGGGCTTCGCTTGCGGTGGATTGAAATGGAGGCTTGAGACCCAAAATAGGCAGGTCACTGTTCGCTGCGATGTTGCGGTCACCGAGAAAGAGGTCGCCGATACGCCCGGTGAGGAATTCCAGTACCAAGCCGAGGTCAGTCGGCTAATGGATTTGATAGTGCACAGTCTATACAGCCACAAGAAGATATTCCTTAGGGAGCGTGTTAGTAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTGTGACTGAGCCCTCGCTGCTTGGAGATGCTGTTGAGCTGCAGATACGCATCAAACCCGACCCAGAGAATGGGACTATCACTATAACGTATGTTGCTGCTAATTTTTTTTTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

145

Amino Acids

16.34

Weight (kDa)

8.62

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
AccB7I CCANNNNNTGG 1 cut(s) 389
AciI CCGC 2 cut(s) 87, 149
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 6 cut(s) 25, 62, 63, 120, 205, 389
AgsI TTSAA 2 cut(s) 34, 97
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 104
Alw44I GTGCAC 1 cut(s) 233
AoxI GGCC 1 cut(s) 27
ApaLI GTGCAC 1 cut(s) 233
ApeKI GCWGC 4 cut(s) 138, 337, 358, 416
ApoI RAATTY 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 145, 194
AxyI CCTNAGG 1 cut(s) 266
BaeGI GKGCMC 2 cut(s) 57, 237
BanII GRGCYC 2 cut(s) 69, 333
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 4 cut(s) 125, 324, 345, 403
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 4 cut(s) 139, 338, 359, 417
BlsI GCNGC 4 cut(s) 140, 339, 360, 418
Bme1390I CCNGG 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 3 cut(s) 283, 337, 378
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 6 cut(s) 25, 62, 63, 120, 205, 389
Bse1I ACTGG 1 cut(s) 193
Bse21I CCTNAGG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 6 cut(s) 25, 62, 63, 120, 205, 389
BseMII CTCAG 3 cut(s) 52, 82, 318
BseNI ACTGG 1 cut(s) 193
BseSI GKGCMC 2 cut(s) 57, 237
BseXI GCAGC 4 cut(s) 125, 324, 345, 403
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 6 cut(s) 25, 62, 63, 120, 205, 389
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 406
BsnI GGCC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 4 cut(s) 57, 69, 237, 333
BspACI CCGC 2 cut(s) 87, 149
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 3 cut(s) 51, 81, 319
BspMAI CTGCAG 1 cut(s) 363
BspMI ACCTGC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 133, 239
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 4 cut(s) 38, 68, 266, 327
BstEII GGTNACC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 104
BstMWI GCNNNNNNNGC 3 cut(s) 84, 293, 337
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 359
BstSLI GKGCMC 2 cut(s) 57, 237
BstV1I GCAGC 4 cut(s) 125, 324, 345, 403
Bsu36I CCTNAGG 1 cut(s) 266
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 129
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 196
CviJI RGCY 9 cut(s) 29, 67, 78, 106, 203, 217, 249, 331, 358
CviKI_1 RGCY 9 cut(s) 29, 67, 78, 106, 203, 217, 249, 331, 358
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 4 cut(s) 38, 68, 266, 327
Eco147I AGGCCT 1 cut(s) 29
Eco24I GRGCYC 2 cut(s) 69, 333
Eco31I GGTCTC 1 cut(s) 104
Eco81I CCTNAGG 1 cut(s) 266
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 188
EcoT38I GRGCYC 2 cut(s) 69, 333
FaiI YATR 3 cut(s) 244, 404, 411
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FaqI GGGAC 1 cut(s) 406
Fnu4HI GCNGC 4 cut(s) 139, 338, 359, 417
FriOI GRGCYC 2 cut(s) 69, 333
Fsp4HI GCNGC 4 cut(s) 139, 338, 359, 417
GluI GCNGC 4 cut(s) 139, 338, 359, 417
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 180
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 145, 194
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 3 cut(s) 14, 41, 71
Hpy8I GTNNAC 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 133, 239
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 3 cut(s) 235, 287, 361
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 293, 337
HpyF3I CTNAG 4 cut(s) 38, 68, 266, 327
HpySE526I ACGT 1 cut(s) 407
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 4 cut(s) 110, 193, 206, 396
Lsp1109I GCAGC 4 cut(s) 125, 324, 345, 403
LweI GCATC 3 cut(s) 283, 337, 378
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 3 cut(s) 127, 151, 322
MboII GAAGA 1 cut(s) 268
MhlI GDGCHC 4 cut(s) 57, 69, 237, 333
MluCI AATT 2 cut(s) 188, 421
MnlI CCTC 6 cut(s) 47, 96, 157, 178, 199, 343
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 1 cut(s) 431
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 84, 293, 337
NciI CCSGG 1 cut(s) 180
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 3 cut(s) 127, 151, 322
PceI AGGCCT 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 4 cut(s) 140, 339, 360, 418
PspEI GGTNACC 1 cut(s) 151
PstI CTGCAG 1 cut(s) 363
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 431
SatI GCNGC 4 cut(s) 139, 338, 359, 417
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 4 cut(s) 57, 69, 237, 333
SetI ASST 7 cut(s) 10, 39, 129, 168, 210, 360, 410
SfaNI GCATC 3 cut(s) 283, 337, 378
SfcI CTRYAG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 2 cut(s) 188, 421
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 2 cut(s) 87, 149
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 133, 239
TaiI ACGT 1 cut(s) 410
TasI AATT 2 cut(s) 188, 421
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 3 cut(s) 127, 151, 322
TseI GCWGC 4 cut(s) 138, 337, 358, 416
Tsp45I GTSAC 3 cut(s) 127, 151, 322
TspRI CASTG 1 cut(s) 136
Van91I CCANNNNNTGG 1 cut(s) 389
VneI GTGCAC 1 cut(s) 233
XapI RAATTY 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.