Rh2DG226200

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001272
Physical Location & Seq
Forward (+)
22191677 .. 22219434
27758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG226200.1

Sequence Viewer

Length: 636 bp
ATGGGGGCAGGGCATGTTGCTGGTGTACAGACGATTATGAGTGCTAGGGTTCCTATAATCAAGATTGTAGACTGTGGAACCGGAATTGAGTGTGATTTATCAATTGAGAACAGGGATGGCATTGTAAAATCCCAGATTGTCTACATAATATCTAGAATTGACGGAAGGGATACTGGTATTGGGATGACGAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTGACGGCTCTGAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGCAGGTGCAGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGATCAAACTATATTTAAGGCCTGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGGGTTGATGTTAAACAAGGAAGGGTATGCTTCTATAGGAGGTGGTTCACCCTTGCGTAAGATGACAGATGAGCAGGCAAATGCACTGAAAATGGCTTTGGAATCAAAGGACATGCCGGTGAATGTCTATGTGGGAATGTGGTACTGGTTCCCGTTCACTGAGGAAGCAGTTCATCAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

211

Amino Acids

23.03

Weight (kDa)

4.9

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 6 - 51 6.8e-11 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Ferrochelatase PF00762 157 - 210 2.5e-12 Ferrochelatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 328
Acc36I ACCTGC 2 cut(s) 328, 334
Acc65I GGTACC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 215
AccB7I CCANNNNNTGG 1 cut(s) 451
AccI GTMKAC 2 cut(s) 69, 141
AclWI GGATC 4 cut(s) 270, 350, 436, 449
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 278
AfaI GTAC 4 cut(s) 27, 217, 235, 596
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 1 cut(s) 240
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AlwI GGATC 4 cut(s) 270, 350, 436, 449
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 621
Asp718I GGTACC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 492, 583
BamHI GGATCC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 215
BccI CCATC 1 cut(s) 110
BceAI ACGGC 2 cut(s) 267, 360
BciVI GTATCC 1 cut(s) 163
BcnI CCSGG 1 cut(s) 439
BfaI CTAG 2 cut(s) 45, 153
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 2 cut(s) 328, 334
BfuI GTATCC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 439
BmiI GGNNCC 5 cut(s) 51, 79, 217, 443, 602
BmrFI CCNGG 1 cut(s) 439
BpuMI CCSGG 1 cut(s) 439
BsaJI CCNNGG 2 cut(s) 211, 376
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 2 cut(s) 178, 602
Bse3DI GCAATG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 211, 376
BseGI GGATG 2 cut(s) 121, 189
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 3 cut(s) 239, 441, 603
BseNI ACTGG 2 cut(s) 178, 602
BsgI GTGCAG 2 cut(s) 291, 362
BshFI GGCC 1 cut(s) 406
BshNI GGYRCC 1 cut(s) 215
BsiSI CCGG 3 cut(s) 81, 439, 569
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 406
Bsp1407I TGTACA 1 cut(s) 25
Bsp143I GATC 4 cut(s) 262, 355, 387, 441
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 3 cut(s) 238, 440, 604
BspLI GGNNCC 5 cut(s) 51, 79, 217, 443, 602
BspMI ACCTGC 2 cut(s) 328, 334
BspPI GGATC 4 cut(s) 270, 350, 436, 449
BspT107I GGYRCC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 568
BsrGI TGTACA 1 cut(s) 25
BsrI ACTGG 2 cut(s) 178, 602
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 2 cut(s) 211, 376
BssMI GATC 4 cut(s) 262, 355, 387, 441
BssT1I CCWWGG 1 cut(s) 211
Bst4CI ACNGT 2 cut(s) 74, 281
BstAUI TGTACA 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 435, 528
BstDEI CTNAG 3 cut(s) 225, 427, 612
BstDSI CCRYGG 1 cut(s) 376
BstF5I GGATG 2 cut(s) 121, 189
BstKTI GATC 4 cut(s) 265, 358, 390, 444
BstMBI GATC 4 cut(s) 262, 355, 387, 441
BstNSI RCATGY 2 cut(s) 17, 568
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 486
BstX2I RGATCY 2 cut(s) 262, 441
BstYI RGATCY 2 cut(s) 262, 441
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 376
BtsCI GGATG 2 cut(s) 121, 189
BtsIMutI CAGTG 2 cut(s) 536, 609
BveI ACCTGC 2 cut(s) 328, 334
Cac8I GCNNGC 2 cut(s) 435, 528
CaiI CAGNNNCTG 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 568
CseI GACGC 1 cut(s) 391
Csp6I GTAC 4 cut(s) 26, 216, 234, 595
CviAII CATG 2 cut(s) 14, 565
CviJI RGCY 5 cut(s) 254, 375, 406, 433, 548
CviKI_1 RGCY 5 cut(s) 254, 375, 406, 433, 548
CviQI GTAC 4 cut(s) 26, 216, 234, 595
DdeI CTNAG 3 cut(s) 225, 427, 612
DpnI GATC 4 cut(s) 264, 357, 389, 443
DpnII GATC 4 cut(s) 262, 355, 387, 441
Eco130I CCWWGG 1 cut(s) 211
Eco147I AGGCCT 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 2 cut(s) 17, 568
FaqI GGGAC 1 cut(s) 394
FatI CATG 2 cut(s) 13, 564
FblI GTMKAC 2 cut(s) 69, 141
FokI GGATG 2 cut(s) 128, 196
FspBI CTAG 2 cut(s) 45, 153
HaeIII GGCC 1 cut(s) 406
HapII CCGG 3 cut(s) 81, 439, 569
HgaI GACGC 1 cut(s) 391
Hin1II CATG 2 cut(s) 17, 568
HinfI GANTC 1 cut(s) 554
HpaII CCGG 3 cut(s) 81, 439, 569
HphI GGTGA 2 cut(s) 492, 583
Hpy166II GTNNAC 5 cut(s) 26, 70, 142, 500, 609
Hpy188I TCNGA 3 cut(s) 228, 258, 430
Hpy188III TCNNGA 5 cut(s) 61, 153, 247, 359, 445
Hpy8I GTNNAC 5 cut(s) 26, 70, 142, 500, 609
HpyAV CCTTC 4 cut(s) 159, 184, 253, 467
HpyCH4III ACNGT 2 cut(s) 74, 281
HpyCH4V TGCA 3 cut(s) 272, 343, 536
HpyF3I CTNAG 3 cut(s) 225, 427, 612
Hsp92II CATG 2 cut(s) 17, 568
KpnI GGTACC 1 cut(s) 219
Kzo9I GATC 4 cut(s) 262, 355, 387, 441
MaeI CTAG 2 cut(s) 45, 153
MalI GATC 4 cut(s) 264, 357, 389, 443
MboI GATC 4 cut(s) 262, 355, 387, 441
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 2 cut(s) 262, 441
MluCI AATT 5 cut(s) 84, 102, 156, 242, 293
MnlI CCTC 3 cut(s) 187, 485, 607
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 2 cut(s) 401, 464
MslI CAYNNNNRTG 1 cut(s) 569
MspI CCGG 3 cut(s) 81, 439, 569
MspR9I CCNGG 1 cut(s) 439
MunI CAATTG 1 cut(s) 102
NciI CCSGG 1 cut(s) 439
NdeII GATC 4 cut(s) 262, 355, 387, 441
NlaIII CATG 2 cut(s) 17, 568
NlaIV GGNNCC 5 cut(s) 51, 79, 217, 443, 602
NspI RCATGY 2 cut(s) 17, 568
PaqCI CACCTGC 1 cut(s) 328
PceI AGGCCT 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 554
PflMI CCANNNNNTGG 1 cut(s) 451
PspN4I GGNNCC 5 cut(s) 51, 79, 217, 443, 602
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 2 cut(s) 262, 441
RsaI GTAC 4 cut(s) 27, 217, 235, 596
RsaNI GTAC 4 cut(s) 26, 216, 234, 595
RseI CAYNNNNRTG 1 cut(s) 569
SaqAI TTAA 2 cut(s) 401, 464
Sau3AI GATC 4 cut(s) 262, 355, 387, 441
ScrFI CCNGG 1 cut(s) 439
SetI ASST 3 cut(s) 342, 348, 496
SfcI CTRYAG 1 cut(s) 486
SmiMI CAYNNNNRTG 1 cut(s) 569
Sse9I AATT 5 cut(s) 84, 102, 156, 242, 293
SseBI AGGCCT 1 cut(s) 406
SspMI CTAG 2 cut(s) 45, 153
StuI AGGCCT 1 cut(s) 406
StyD4I CCNGG 1 cut(s) 437
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 74, 281
TasI AATT 5 cut(s) 84, 102, 156, 242, 293
TatI WGTACW 1 cut(s) 25
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 2 cut(s) 401, 464
Tru9I TTAA 2 cut(s) 401, 464
TscAI CASTG 2 cut(s) 543, 616
TspDTI ATGAA 1 cut(s) 614
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 2 cut(s) 543, 616
Van91I CCANNNNNTGG 1 cut(s) 451
XapI RAATTY 1 cut(s) 242
XbaI TCTAGA 1 cut(s) 152
XceI RCATGY 2 cut(s) 17, 568
XmiI GTMKAC 2 cut(s) 69, 141
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 2 cut(s) 45, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.