Rmu_sc0004671.1_g000001

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004671.1
OG0001272
Physical Location & Seq
Forward (+)
1 .. 937
937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004671.1_g000001.1.cds

Sequence Viewer

Length: 387 bp
atcttccaccttcgaatttccgatggcgtttccctacacaaacctcacgctctttctctctctaccctctccctcgccttctccacagcatctcttgcttcacttccttctttgactctcagaaaccccaacaaggccttgaacctcagaagtgcctttgtgccccaaaatgggctcagaaagggcttcgcttgcggtggattgaaatggaggcttgagacccaaaataggcaggtcactgttcgctgcgatgttgcggtcaccgagaaagaggtcgccgatacgcccggtgaggaattccagtaccaagccgaggtgggtttctctctgtttctactaaagtttggttatttttgggttttgactcaattgggttctgacttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

128

Amino Acids

14.19

Weight (kDa)

9.1

Isoelectric Point (pI)

28.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 223
AciI CCGC 2 cut(s) 195, 257
AcsI RAATTY 2 cut(s) 15, 296
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 5 cut(s) 133, 170, 171, 228, 313
AgsI TTSAA 2 cut(s) 142, 205
Alw26I GTCTC 1 cut(s) 212
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 2 cut(s) 15, 296
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 253, 302
AsuII TTCGAA 1 cut(s) 13
BaeGI GKGCMC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 233
BccI CCATC 1 cut(s) 17
BcnI CCSGG 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 223
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 98
Bpu14I TTCGAA 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 5 cut(s) 133, 170, 171, 228, 313
Bse1I ACTGG 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 312
BseLI CCNNNNNNNGG 5 cut(s) 133, 170, 171, 228, 313
BseMII CTCAG 3 cut(s) 133, 160, 190
BseNI ACTGG 1 cut(s) 301
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 1 cut(s) 233
BshFI GGCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 5 cut(s) 133, 170, 171, 228, 313
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 165, 177
BspACI CCGC 2 cut(s) 195, 257
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 3 cut(s) 132, 159, 189
BspMI ACCTGC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 212
BsrI ACTGG 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 241
BstAPI GCANNNNNTGC 1 cut(s) 95
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 3 cut(s) 119, 146, 176
BstEII GGTNACC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 212
BstMWI GCNNNNNNNGC 2 cut(s) 95, 192
BstPI GGTNACC 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 137
BtgZI GCGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 304
CviJI RGCY 5 cut(s) 137, 175, 186, 214, 311
CviKI_1 RGCY 5 cut(s) 137, 175, 186, 214, 311
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 3 cut(s) 119, 146, 176
Eco147I AGGCCT 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 247
GluI GCNGC 1 cut(s) 247
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 288
HinfI GANTC 2 cut(s) 115, 364
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 253, 302
Hpy188I TCNGA 5 cut(s) 22, 122, 149, 179, 379
HpyAV CCTTC 3 cut(s) 20, 88, 117
HpyCH4III ACNGT 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 192
HpyF3I CTNAG 3 cut(s) 119, 146, 176
LpnPI CCDG 3 cut(s) 218, 301, 314
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 235, 259
MfeI CAATTG 1 cut(s) 368
MhlI GDGCHC 2 cut(s) 165, 177
MluCI AATT 3 cut(s) 15, 296, 368
MlyI GAGTC 2 cut(s) 109, 358
MnlI CCTC 8 cut(s) 54, 77, 83, 155, 204, 265, 286, 307
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 288
MunI CAATTG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 95, 192
NciI CCSGG 1 cut(s) 288
NmeAIII GCCGAG 1 cut(s) 337
NmuCI GTSAC 2 cut(s) 235, 259
NspV TTCGAA 1 cut(s) 13
PceI AGGCCT 1 cut(s) 137
PkrI GCNGC 1 cut(s) 248
PleI GAGTC 2 cut(s) 109, 358
PpsI GAGTC 2 cut(s) 109, 358
PspEI GGTNACC 1 cut(s) 259
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SatI GCNGC 1 cut(s) 247
SchI GAGTC 2 cut(s) 109, 358
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 2 cut(s) 165, 177
SetI ASST 6 cut(s) 12, 46, 147, 237, 276, 318
SfaNI GCATC 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 3 cut(s) 15, 296, 368
SseBI AGGCCT 1 cut(s) 137
SsiI CCGC 2 cut(s) 195, 257
StuI AGGCCT 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 13
TasI AATT 3 cut(s) 15, 296, 368
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 2 cut(s) 235, 259
TseI GCWGC 1 cut(s) 246
Tsp45I GTSAC 2 cut(s) 235, 259
TspRI CASTG 1 cut(s) 244
XapI RAATTY 2 cut(s) 15, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.