RchiOBHm_Chr2g0102611

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001272
Physical Location & Seq
Forward (+)
14109866 .. 14110783
918 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47702

Sequence Viewer

Length: 507 bp
ATGGAGGCGCTCTCTCTCTCTCTCGTCCTCCCTCTCTATCCATCATCGCAAACACCCAAAATCACCTACCCATGTAATCATCAGATCTTCCACCTTCGAATTTCCGGTGGCGTTTCCCTACACAAACCTCACGCTCTTTCTCTCTCTACCGTCTCCCTCGCCTTCTCCACAGCATCTCTTGCTTCACTTCCTTCTTTGACTCTCAGAAACCCCAACAATGCCTTGAACCTCAGAAGTGCCTTTGTGCCCCAAAATGGGCTCAGAAAGGGCTTCGCTTGCGGTGGATTGAAATGGAGGCTTGAGACCCAAAATAGGCAGGTCACTGTTCGCTGCGATGCTGCGGTCGCCGATACGCCCAGTGAGGAATTCCAGTACCAAGCCGAGGTCAATCGGCTAATGGATTTGATAGTGCATAGTCTATATAGCCACAAGAAGGTATTCCTTAGGGAGCGTGTTAGTAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTTGAGTGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418
Pfam Domains
Protein Families
HATPase_c HSP90

Protein Analysis

168

Amino Acids

18.71

Weight (kDa)

9.21

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 307
AciI CCGC 2 cut(s) 279, 341
AcsI RAATTY 2 cut(s) 99, 365
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 5 cut(s) 254, 255, 312, 382, 433
AgsI TTSAA 2 cut(s) 226, 289
Alw26I GTCTC 2 cut(s) 157, 296
ApeKI GCWGC 2 cut(s) 330, 338
ApoI RAATTY 2 cut(s) 99, 365
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 55
AsuII TTCGAA 1 cut(s) 97
AxyI CCTNAGG 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 249
BanII GRGCYC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 317, 325
BccI CCATC 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 157, 296
BfoI RGCGCY 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 307
BglII AGATCT 1 cut(s) 84
BisI GCNGC 2 cut(s) 331, 339
BlsI GCNGC 2 cut(s) 332, 340
BmrI ACTGGG 1 cut(s) 351
BmsI GCATC 3 cut(s) 182, 325, 460
BmuI ACTGGG 1 cut(s) 351
BplI GAGNNNNNCTC 1 cut(s) 28
Bpu14I TTCGAA 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 5 cut(s) 254, 255, 312, 382, 433
Bse1I ACTGG 2 cut(s) 357, 370
Bse21I CCTNAGG 1 cut(s) 443
BseDI CCNNGG 1 cut(s) 381
BseLI CCNNNNNNNGG 5 cut(s) 254, 255, 312, 382, 433
BseMII CTCAG 3 cut(s) 217, 244, 274
BseNI ACTGG 2 cut(s) 357, 370
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 2 cut(s) 317, 325
Bsh1285I CGRYCG 1 cut(s) 345
BsiEI CGRYCG 1 cut(s) 345
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 5 cut(s) 254, 255, 312, 382, 433
BsmAI GTCTC 2 cut(s) 157, 296
BsmBI CGTCTC 1 cut(s) 157
Bso31I GGTCTC 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 249, 261
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 2 cut(s) 279, 341
BspCNI CTCAG 3 cut(s) 216, 243, 273
BspMI ACCTGC 1 cut(s) 307
BspT104I TTCGAA 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 296
BsrI ACTGG 2 cut(s) 357, 370
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 151, 325
BstAPI GCANNNNNTGC 2 cut(s) 179, 470
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 4 cut(s) 203, 230, 260, 443
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 2 cut(s) 157, 296
BstMBI GATC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 4 cut(s) 179, 276, 344, 470
BstSLI GKGCMC 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 317, 325
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 443
BtgZI GCGATG 2 cut(s) 30, 348
BtsIMutI CAGTG 2 cut(s) 321, 364
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 373
CviAII CATG 1 cut(s) 72
CviJI RGCY 6 cut(s) 259, 270, 298, 380, 394, 426
CviKI_1 RGCY 6 cut(s) 259, 270, 298, 380, 394, 426
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 4 cut(s) 203, 230, 260, 443
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 296
Eco81I CCTNAGG 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 365
EcoT38I GRGCYC 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 1 cut(s) 75
FaiI YATR 4 cut(s) 73, 414, 421, 423
FalI AAGNNNNNCTT 2 cut(s) 457, 489
FatI CATG 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 331, 339
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 2 cut(s) 331, 339
GlaI GCGC 1 cut(s) 9
GluI GCNGC 2 cut(s) 331, 339
HaeII RGCGCY 1 cut(s) 11
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 10
Hin1II CATG 1 cut(s) 75
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 1 cut(s) 199
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 4 cut(s) 84, 206, 233, 263
HpyAV CCTTC 4 cut(s) 104, 172, 201, 427
HpyCH4III ACNGT 2 cut(s) 151, 325
HpyCH4V TGCA 2 cut(s) 412, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 276, 344, 470
HpyF3I CTNAG 4 cut(s) 203, 230, 260, 443
Hsp92II CATG 1 cut(s) 75
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 4 cut(s) 118, 302, 370, 383
Lsp1109I GCAGC 2 cut(s) 317, 325
LweI GCATC 3 cut(s) 182, 325, 460
MaeIII GTNAC 2 cut(s) 319, 500
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 1 cut(s) 79
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 2 cut(s) 249, 261
MluCI AATT 2 cut(s) 99, 365
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 8 cut(s) 38, 42, 138, 167, 239, 288, 355, 376
MroXI GAANNNNTTC 1 cut(s) 437
MspI CCGG 1 cut(s) 105
MwoI GCNNNNNNNGC 4 cut(s) 179, 276, 344, 470
NdeII GATC 1 cut(s) 84
NlaIII CATG 1 cut(s) 75
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 2 cut(s) 319, 500
NspV TTCGAA 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 437
PkrI GCNGC 2 cut(s) 332, 340
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SatI GCNGC 2 cut(s) 331, 339
Sau3AI GATC 1 cut(s) 84
SchI GAGTC 1 cut(s) 193
SduI GDGCHC 2 cut(s) 249, 261
SetI ASST 7 cut(s) 68, 96, 130, 231, 321, 387, 438
SfaNI GCATC 3 cut(s) 182, 325, 460
SfuI TTCGAA 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 2 cut(s) 99, 365
SsiI CCGC 2 cut(s) 279, 341
TaaI ACNGT 2 cut(s) 151, 325
TaqI TCGA 1 cut(s) 97
TasI AATT 2 cut(s) 99, 365
TscAI CASTG 2 cut(s) 328, 364
TseFI GTSAC 2 cut(s) 319, 500
TseI GCWGC 2 cut(s) 330, 338
Tsp45I GTSAC 2 cut(s) 319, 500
TspRI CASTG 2 cut(s) 328, 364
XapI RAATTY 2 cut(s) 99, 365
XmnI GAANNNNTTC 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.